Dbfetch
LOCUS NM_135349 3240 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein (CG8419), mRNA. ACCESSION NM_135349 VERSION NM_135349.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3240) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3240) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3240) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3240) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3240) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3240) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3240) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3240) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3240) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3240) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3240) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3240) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3240) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3240) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3240) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3240) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3240) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3240) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3240) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3240) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3240) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 3240) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3240) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 3240) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 3240) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). On Jan 16, 2013 this sequence version replaced NM_135349.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3240 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3240 /gene="CG8419" /locus_tag="Dmel_CG8419" /gene_synonym="Dmel\CG8419" /map="28F1-28F2" /db_xref="FLYBASE:FBgn0031999" /db_xref="GeneID:34118" CDS 109..2874 /gene="CG8419" /locus_tag="Dmel_CG8419" /gene_synonym="Dmel\CG8419" /note="CG8419 gene product from transcript CG8419-RA; CG8419-PA" /codon_start=1 /product="uncharacterized protein" /protein_id="NP_609193.1" /db_xref="FLYBASE:FBpp0079210" /db_xref="GeneID:34118" /db_xref="FLYBASE:FBgn0031999" /translation="MSRENRSKIAFKRKTSNGNKSGQLTDYERIRGDVEIVVPSPPPT PAVPPSASLGKLKIKLSSAKISLRKNAQTSQNNLQTAPLPDAVRRKSAPQLFTFTIAP KSEVTSKIHLPSVPKLPGLAPKSSIRRSRTLGLSNSAQGAGSSGTGLSNVELGVQDRD SGSEPTSSLAGGGSSTSPESLLDNILSGASSVSVQSSSSSQASNATVAQPIKAKEQLH PKRLLSLKASPELRVSPPTPDTTQPQVQMPTQLLLSLTPRPEVFDAPSPLTRSPSRSP GISPPVSPSPSITLRPSTPPENTVIFTDDLKCGICLDVYTDPRTLHCLHSFCLQCLVS ENFKDESLWDQDQARSEEPSNYSLRSEMGGSSAELTATVSPARQRGSSFTLRRKKSMD RLVIRSKSDGKRSTSSIGTRFTGSFASEVSTRCIRCHTCNYPTDLSLGGVRQLPQNYL LVRRIEVLRLQAGEDVISRVWCSLCTEEISATYHCISCTLNLCTLCKEAHERQRSTAS HRMRSILELRRARKQKQQQMGLGDSSKLVLRCGIHTNFELKAFCTNCRQLACTDCLVI LHKGHRHETISRAIGHQGKLLKEATDQTRPLCQYAEHSIERLNAIARGINDRCDDIQT QVERYMQQYMDALTVHRKTLLQQISRARESKVEVVLKQQLDLEKRTQQAMDAVRFSQE LCEIGADVEILSYVTILLRRLEYCQQFKPPVDPKISDSLHFLPKIRAPSTKDQRDIPL YGIITMQVVEPSLCTLEWEGFSQLRLHKKADLLLHSRDADGVSLCHGGLEINCMLKYK DSSSKFLPVEVSDNRDGTYNISFTPDAQGTLILTITINDRPIKGGPFTFQARQVRPHT GIYHCCSFCSGKGNRNVMCSCEGHMPGYSGCGHGHAGHPGRRHWSCCGNVLENSECNV ANKLLNS" ORIGIN 1 ccgagaccca gtctcagttt cagtcccaat tgcaacggga acacgcggtg gtgctccaga 61 ttgcctggaa tccgtagtcc gagctgcagg attgcataac cgggaagcat gagcagggaa 121 aatcgctcga aaatcgcttt caagcgaaaa acgagtaacg gaaacaagag tggccagtta 181 acggattacg aacgcatccg aggggatgtg gaaatagttg ttccgagccc acctcctact 241 ccagctgtgc cacccagtgc atccttaggg aaacttaaga taaagttgag ttctgccaaa 301 atttccttac gaaaaaacgc acagacttcg cagaataatc tgcagaccgc tcccttacca 361 gacgcagtgc gtcgcaaatc agcaccacaa ctttttacct ttactattgc cccaaagagc 421 gaagtgactt cgaaaataca tctaccctca gtgccaaagc taccgggttt ggcaccaaag 481 agctccatcc gaagatctag gactttgggt ttgtcgaata gtgcccaggg tgcagggtca 541 tcaggtacag ggctatccaa tgtcgaactc ggtgtgcagg atagggacag tggcagtgag 601 cccactagca gcttggctgg aggaggtagc tctacttcgc ctgaatccct tttggataac 661 atactcagcg gtgcctcctc cgtttccgta caaagtagta gcagcagcca agccagtaat 721 gctacggtgg cacagcccat aaaagcaaag gagcaactgc atcccaagag gctactcagc 781 ttgaaggctt ctccggagct gagagtatct ccaccaactc cagacactac tcaaccccag 841 gtccagatgc caactcaact tctgctttca ctgactccaa gaccagaggt ctttgatgca 901 ccctcaccac tgaccagaag tccctcacga tctcccggaa tctctccccc cgtgtcacca 961 tcacccagca ttactctcag accgagtacc cctcccgaga acaccgtaat cttcacagat 1021 gatctcaagt gcggcatctg cctggatgtt tacacagatc ccaggacact gcattgcttg 1081 cattcctttt gtctccaatg tctggtcagc gagaacttta aggacgaatc tttgtgggat 1141 caggatcaag ctcgcagtga ggagccctcg aattacagtc taagatcgga gatgggtgga 1201 tctagtgcgg aacttactgc gacagtatca cccgccaggc agcgaggttc cagttttaca 1261 ttgagaagaa agaagtccat ggatcgccta gtgataaggt ccaagagtga cggaaagcga 1321 tcgaccagtt ccatcggtac ccgattcacc ggaagttttg ccagcgaggt atccacccgc 1381 tgcatccgct gtcatacctg taactatccc acggatcttt cgttaggtgg agtacgtcag 1441 cttccacaga actacttgct agtgagacgc atagaggtct tgcgactaca ggctggggag 1501 gatgtaatct ccagggtctg gtgttctctt tgcacagagg agattagcgc cacctaccac 1561 tgcattagct gcactttaaa cctctgcacc ttgtgcaagg aggcacacga aaggcaaagg 1621 agcaccgcta gccatcgaat gagaagcatc ctggaactta gacgcgccag gaagcaaaag 1681 caacagcaga tgggattggg agatagtagc aaactagtgc tacgatgcgg aatccatacc 1741 aactttgagc tgaaggcatt ttgcaccaac tgccgtcaac tggcatgcac cgactgtttg 1801 gtgatccttc ataaaggcca tcgacatgag accatatccc gggcaattgg acatcagggt 1861 aaactactca aagaagctac ggatcaaact cgtcccctct gtcaatatgc ggagcactcc 1921 attgagaggt tgaatgccat agcacgtgga atcaacgacc ggtgtgacga catccagact 1981 caagtggagc ggtacatgca gcagtacatg gatgccctga cagtccatcg caagactctg 2041 ctccagcaaa tcagcagagc tagggagtcc aaagtggagg tagtgctcaa gcagcaactt 2101 gatttggaga aacgcactca gcaggccatg gatgcggtta gatttagcca agagctgtgc 2161 gagattggtg ctgatgtaga gattctgagt tatgtgacta tacttctaag gcgtttggag 2221 tactgtcagc aatttaagcc gcctgtggat cccaagatat ccgactcgct tcacttccta 2281 ccaaaaatcc gtgctccgtc gacaaaggac cagcgcgata tccctctata tggcatcatc 2341 accatgcagg tagtggagcc tagtctatgc acccttgagt gggagggatt ttcacagctg 2401 cgcctccaca aaaaagcgga tcttctgctt cactctagag atgccgacgg ggtttccctc 2461 tgccacggtg gcctggagat caactgcatg ctgaagtaca aggactccag ttccaagttt 2521 ctacccgttg aggtgtcgga caatcgtgat ggcacctaca acatatcctt caccccggat 2581 gcccagggca cgttgattct cacgatcacc attaacgacc ggcccatcaa gggaggtcct 2641 ttcacttttc aagcgcgaca ggttcgtccg catacgggca tctaccactg ctgctccttc 2701 tgttccggaa agggcaaccg gaacgtgatg tgctcgtgtg agggtcatat gcctggatat 2761 agtggctgcg gtcatggaca tgctggacat ccagggagac gtcattggtc ctgctgtgga 2821 aatgtccttg agaactcgga atgcaatgtg gccaacaaac tgcttaattc ttaagtaatt 2881 gattaggatg cagggctata aaacgaataa attaacatat agccaggttt cgccattttg 2941 tttgttcatc ttgtgaaatt tcaaagatct tgtagtttat acgcacgcgc agatagacaa 3001 caaggatact tcaaaataaa cgtttttcta cctgcaaaat acatgcattc caacagaccc 3061 gacagtccat ttacaatgtg cacacaataa tctcagattg ctaaggctac aaaatccctt 3121 tcgacctctg gaattaccaa ttgaattctc cttattacca tatggtcagc atatgcgcgt 3181 catatcctga ccgttgagca acaagtcgca aataaaagtt acttatatag gctccagcag //