Dbfetch
LOCUS NM_134975 2369 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant A (CG3702), mRNA. ACCESSION NM_134975 VERSION NM_134975.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2369) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2369) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2369) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2369) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2369) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2369) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2369) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2369) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2369) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2369) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2369) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2369) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2369) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2369) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2369) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2369) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2369) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2369) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2369) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2369) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 2369) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 2369) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 2369) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 2369) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 2369) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). On Nov 5, 2002 this sequence version replaced NM_134975.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2369 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2369 /gene="CG3702" /locus_tag="Dmel_CG3702" /gene_synonym="cg3702; Dmel\CG3702" /map="24D8-24E1" /db_xref="FLYBASE:FBgn0031590" /db_xref="GeneID:33628" CDS 210..2135 /gene="CG3702" /locus_tag="Dmel_CG3702" /gene_synonym="cg3702; Dmel\CG3702" /note="CG3702 gene product from transcript CG3702-RA; CG3702-PA" /codon_start=1 /product="uncharacterized protein, isoform A" /protein_id="NP_608819.1" /db_xref="FLYBASE:FBpp0077166" /db_xref="GeneID:33628" /db_xref="FLYBASE:FBgn0031590" /translation="MSKAGEDQPAAEGAVIAGNGNAELAQNEGQNEQQQPPPNQPTRM ESFFAMTKSLILRALIIYFVSSFFRRPAPDAASQGKSVANAGPKITAWNYFENGTDFD LHVWLSENPDVVNFQQKANLLWLQKDLTYGDWTSGVNGDGIYTHSLKLKTSQHLMNNG SVYLHAFVTRTGMSPDPKAPNYATKMGHQQHQLNKFKKLRVNRNYNLLASEKEKLEHE LKHANLKDTIVSHWHPNLTVNLVVDQTNWAEGSVPPPLDDYVKFVDGGKTYLPILFVN DYWNLQREYQPINETTPELELHLTFQPLGMFKWQLYAAKQMKNKWAGNMLGELMAASQ PEESDEDQDSLKETLLDTNIYLLGITVAVSILHSVFELLAFKNDIQFWNNRKSLEGLS VRSVFFGVFQSLIILLYVLDNETNFMIRISCFVGLGIEVWKIHKVVDINYDHDQKILG VLPRISFQDKGSYSESSTKDYDKLAFKYLGWACFPLLVAYFVYSLIYNEHKGWYSFVL NMLYGYLLTFGFILMTPQLFINYKLKSVAHMPWRMMTYKFLNTFIDDIFAFVIKMPTM YRLGCFRDDIIFFVFLYQRWQYRVDLKRVNEFGFSGEMEQQHAAQKLEGKTANGAIEG PQAAPAIKKTAAQKKQD" ORIGIN 1 acttagtgaa aaaagtatgt ctttatagtg agaacaccgt gcttttccat tctgcgtcaa 61 atcgatagat tctgaaaaat acccctttcg atatcgaagt tctaatggct cgataggtcc 121 tcaacactta cctatcgatg acagtagcac aagttgtgcg gaaaacggga aactaaggga 181 aaagcgtgga aaacccttga gaacagagca tgtcgaaagc aggcgaagat cagcccgcag 241 cagagggtgc ggtgattgcg ggcaatggta acgctgagct ggcccaaaat gaaggccaga 301 atgagcaaca acaacccccg ccgaatcagc ccacccgcat ggagtccttc tttgcgatga 361 ccaagtccct catcctgcgt gccctgatca tctactttgt gagctccttt ttccgacgac 421 ctgcgcccga tgccgccagt caaggcaaaa gtgtcgctaa tgcgggtccc aagatcacgg 481 cctggaatta cttcgagaac ggcacggact ttgacctgca cgtgtggttg tcggagaatc 541 ccgatgtggt taacttccag caaaaggcga atctcctctg gctacagaag gacctcacct 601 atggcgattg gacgtcgggc gtcaacggag atggcattta cacgcacagt ttgaagctta 661 agaccagcca gcatctgatg aacaatggca gtgtgtacct acatgccttt gtcacgcgta 721 ccggcatgag tcccgatccc aaagccccga attacgccac caaaatgggc caccagcaac 781 atcagctgaa caagttcaag aagttgcgtg tgaaccgcaa ctacaacttg ctggccagcg 841 agaaggagaa gttggagcac gagctcaagc atgcgaatct caaggatacc atcgtgtctc 901 actggcatcc taatctcacg gtcaatctcg tagtggacca aactaactgg gccgagggat 961 ctgtgccgcc gccactggat gactacgtaa agttcgtaga cggcggtaag acctatctgc 1021 ccatcctgtt cgtcaacgac tactggaatc ttcagcggga gtatcaaccc attaatgaga 1081 ccactcccga actggagctg cacctcactt tccagccgct gggcatgttc aagtggcagc 1141 tgtatgccgc caaacagatg aagaacaagt gggctggcaa tatgctcggt gagctgatgg 1201 ccgccagcca gccggaggag agtgacgagg atcaggactc gctgaaggag actctgctgg 1261 acaccaatat ctacctgctg ggcatcacag tggccgtttc catactgcat tcggtgttcg 1321 aactgctggc cttcaagaac gacattcagt tctggaacaa tcgcaagtcg ctcgaaggac 1381 tgtctgtacg atcggtgttc ttcggtgtct tccagtcact aatcatcctg ctgtacgtgc 1441 tggacaacga gaccaacttc atgattcgca tctcctgttt cgtgggactg ggaatcgagg 1501 tgtggaagat tcacaaggtc gtggatatca actacgatca cgatcaaaag attctgggag 1561 tgctgccgag aatcagtttc caggacaagg gctcctattc ggagagctcg accaaagact 1621 atgacaaact ggccttcaag tacctgggct gggcatgctt cccgctcctg gtggcctact 1681 ttgtctactc gttgatctac aacgagcaca agggctggta ctcatttgtg ctcaacatgc 1741 tgtacggcta tctgctgacc tttggcttca tcctgatgac gccgcagcta ttcatcaact 1801 acaagctaaa gtcggtggcc cacatgccgt ggcgcatgat gacctacaag ttcctcaaca 1861 cctttatcga tgacatcttt gcgtttgtga tcaaaatgcc cacaatgtac cggttgggtt 1921 gcttccgcga cgacatcatc ttctttgtgt tcctctacca gcgctggcag tatcgcgtcg 1981 atttgaagcg cgtgaatgag ttcggcttct ccggggagat ggagcagcag catgccgccc 2041 agaagctgga gggcaagaca gccaatggag ccatcgaagg tccccaggct gcgccagcga 2101 tcaaaaagac agctgcacaa aagaagcagg attagaagga gtgcagagct gtgaccacag 2161 tatgcattag cattagaaga cgcaatacca tatactccac tcccccaata tgtatgtaat 2221 cactatccag tatacatagt caagtaatcc cgatagaatc attcttaggg ctaattgtat 2281 gtacgtatgt ttgtgttttt gttttcccct gccctccgcg cttctcgcag cgttggaaga 2341 tctaataaat taagcgtgag atgatccat //