Dbfetch
LOCUS NM_134892 2734 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant A (CG17264), mRNA. ACCESSION NM_134892 VERSION NM_134892.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2734) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2734) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2734) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2734) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2734) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2734) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2734) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2734) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2734) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2734) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2734) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2734) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2734) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2734) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2734) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2734) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2734) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2734) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2734) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2734) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 2734) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 2734) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 2734) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 2734) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 2734) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). On Dec 17, 2009 this sequence version replaced NM_134892.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2734 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2734 /gene="CG17264" /locus_tag="Dmel_CG17264" /gene_synonym="Dmel\CG17264" /map="23C4-23C4" /db_xref="FLYBASE:FBgn0031490" /db_xref="GeneID:33511" CDS 341..2455 /gene="CG17264" /locus_tag="Dmel_CG17264" /gene_synonym="Dmel\CG17264" /note="CG17264 gene product from transcript CG17264-RA; CG17264-PA" /codon_start=1 /product="uncharacterized protein, isoform A" /protein_id="NP_608736.2" /db_xref="FLYBASE:FBpp0077332" /db_xref="GeneID:33511" /db_xref="FLYBASE:FBgn0031490" /translation="MAVDMDMEAIKSLTSSQDVANQYDSNWKPDGTAKVLFSQKCSAS EKKVTGAGCGHLLPSLSAAICVLIFQVGLAPAVSARSPANETAWPPMRHYDIWDDHLG EPGALEEDSFADEVNFRLQTGTPGELDIEMSLQEISDRNSSQANNRQGKVIHLFPVPV DGYCMSSDNRRIGNCLNAYECRQKDGQARGECAMGFGVCCVFLASCNTTITNNVTYIV SPEFPSFMPSNFTGCSLRVKMMSDEISQVRIDFHHFTLGQPNRRTGVCEGDIFSIGGG PGGNFSLCGQNSGQHLYYDVGTRASPRQSTLYGSLRPVDASTGPSNSTPTGDRFIDIS LSLSSRLLPLRIWEMSVVQIPFSQRAPAGCLQYHTGTEGIMQTFNFAENGRHLANQNY RICVRQELDMCSIMYQPCDEQSFRIGGGGRMASRGGGTSEAAATTATSSPAPAQSDAA GATATTLGNAAVTTTAPTSSTLMQMLANMANSTTTTLMTMMSGNSTLAASSVSSGSTS SSSSSSTAAMSTTTTSTTPTPLRSSTEASTTSAAPASSPASDDVEGSGGEVGDDEDDD GGFLFFRSRPTTEGPTVSRRPRPSGGFDIMGIIRNAIDLPLKWRRRQARQFFSTCSDR ITMPCIIEDFIGTGLGPLPGCEPVHCGAQFCSSGVWPCRIESTVTPFYIGVHFGNGQG AGKANAEDNVGACLRYSQVQCM" ORIGIN 1 tgtgaattct agctgcgacc ctccttattc gcagatcact actgatgaaa aatgacacaa 61 tttgtatcgt cataaaatga atatattttc aattatcagc cataatagat atgataagcg 121 ggtattatag gagaaaagcc gagaagcgga gaaaagcagt tgcagacaag cgcagagtca 181 ccatcatcgg gcagctgtca tctggttcag atcgagcagc atccgcgcat ctcggaagat 241 ggagactggc gcacttacca ttcaactgcg cagtgaatcg cacacgcata taaaatattc 301 ggagtgtgct cagagaagaa gttgcagctg aacatatggc atggcagtgg acatggacat 361 ggaagccata aaatcgctga cgtcgagcca agacgttgcc aaccagtacg actccaactg 421 gaaacccgat ggcacagcaa aagttttatt cagccagaag tgcagtgcca gtgaaaagaa 481 agtcactgga gccggttgtg gccacctact gccgtccctc tccgccgcaa tttgcgtact 541 tatcttccag gtggggctgg ctcctgcagt cagcgccagg tcgccggcta acgagacggc 601 ctggccacca atgcgacatt acgatatttg ggacgaccac ttgggcgagc cgggcgctct 661 tgaggaagat tccttcgcgg atgaggtgaa ctttaggctg caaacgggaa caccggggga 721 actggacatt gagatgtcgt tgcaggaaat ctctgatcgg aattccagcc aggcgaacaa 781 cagacaggga aaagttatcc atctgttccc tgttcccgtg gatggctact gcatgtcgag 841 cgataatcgg cggattggca actgcctgaa tgcatacgag tgccgccaga aggacggtca 901 ggcgaggggg gagtgtgcca tggggttcgg ggtgtgctgc gtgttcctgg ccagctgcaa 961 cactacgatt accaacaacg tgacctacat tgtgtcgccg gaattcccca gcttcatgcc 1021 cagcaacttc acaggctgca gtctgcgggt aaagatgatg agcgacgaga tcagccaggt 1081 gcggattgac ttccatcact ttacactggg ccagccaaac cgaagaaccg gagtgtgcga 1141 aggcgatatc ttcagcatag gtggtggacc aggcggaaac ttctccctat gcggccaaaa 1201 cagtggtcag cacttgtact acgatgtggg gacacgggcg tcgccacgac aatctacttt 1261 gtacggcagt ctgcgccctg tggatgcgag tactggccct agcaactcca cccccacggg 1321 cgatcgcttc atcgacatca gtctgagcct gtccagtcgc cttctgccgc tccgcatttg 1381 ggagatgagt gtggtgcaga tccccttcag ccaacgagct ccggcgggtt gcctacaata 1441 tcacaccggc accgagggca ttatgcaaac ctttaacttc gccgagaatg gtcgacattt 1501 ggccaatcaa aactatcgga tttgtgtgcg ccaggagctg gacatgtgct ccattatgta 1561 ccagccatgc gatgagcagt ccttccgcat cggcggaggt gggcgaatgg caagccgagg 1621 tggtggcacc tctgaagcag cagcgacaac ggcaacgtcg agtcctgctc cagcccagtc 1681 agatgcagca ggtgcaacag caacaacatt aggcaatgct gcagtgacca ctacagcacc 1741 tacttctagc accctcatgc agatgctagc caacatggca aactccacaa ccacaacgct 1801 gatgaccatg atgagcggaa attcgactct ggctgccagt tcagtatcat cgggcagtac 1861 cagcagcagc agcagtagca gcaccgctgc catgagcacg acgacaacat caaccactcc 1921 cacaccgctc cgatccagta cagaggcatc taccacctcg gcagcacctg catcttcgcc 1981 agccagcgat gatgtggagg gatcgggtgg tgaggtaggc gatgatgagg atgacgacgg 2041 tgggtttctc ttcttcagga gtcgtcccac cacggaggga cctaccgttt ccagacgtcc 2101 tcgtcccagt ggaggcttcg acatcatggg tattattcgg aatgccatcg atttgccgct 2161 gaagtggcga cggcgacagg cccgccagtt cttcagcacc tgctctgacc ggattacaat 2221 gccttgcatc atagaggatt tcataggaac cggtctgggc ccacttcctg ggtgcgagcc 2281 cgtccactgc ggcgcccaat tctgctcctc gggcgtgtgg ccctgtcgca ttgaaagcac 2341 tgtgactccg ttctatattg gtgtccactt cggcaatggc cagggcgccg gcaaggcgaa 2401 cgcagaggat aacgtgggtg cctgtctgcg atattcccaa gtgcaatgca tgtaatgact 2461 tgcggggata ttaactttca tttcgcttta acaaattatt tttcaattat cgaaatagag 2521 ttaagatact gtgtttgtga tgacttaaat acttctattt tatttgtagg ttgatagtaa 2581 cattccctgg ataaatagta tgtacaaaat tcttcaactt attcgaactt agttaagaca 2641 aactacaatg attcaaaata gtattctaag cgacttttac agctttcaat aaatgtctat 2701 gtgagttgtt cgcttgctta tattatcgaa ttat //