Dbfetch
LOCUS NM_132429 3363 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein (CG2202), mRNA. ACCESSION NM_132429 VERSION NM_132429.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3363) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3363) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3363) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3363) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3363) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3363) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3363) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3363) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3363) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3363) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3363) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3363) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3363) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3363) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3363) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3363) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3363) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3363) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3363) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3363) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3363) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3363) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3363) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_132429.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3363 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3363 /gene="CG2202" /locus_tag="Dmel_CG2202" /gene_synonym="Dmel\CG2202" /map="9F5-9F5" /db_xref="FLYBASE:FBgn0030240" /db_xref="GeneID:32014" CDS 139..2808 /gene="CG2202" /locus_tag="Dmel_CG2202" /gene_synonym="Dmel\CG2202" /note="CG2202 gene product from transcript CG2202-RA; CG2202-PA" /codon_start=1 /product="uncharacterized protein" /protein_id="NP_572657.2" /db_xref="FLYBASE:FBpp0073236" /db_xref="GeneID:32014" /db_xref="FLYBASE:FBgn0030240" /translation="MATPQPQPQLELGSCQEAQTEPAVSKLVSQLEPLTTMDTVDAER VCRVCLKDVSLEGELHFIFNETPVEQDANLARILDECTLHQCERNDGMPPHMCSSCVE AARNAYRFKRHAERSYCSLVALLGRSPQLKARGAEAASQTDQVALLPCEMCHDQFLNS LELRLHRNQVHRTTKEATSAGTDGLPSEDFKCKFCPQHFPHLRQLRSHLARSHEQTAR LQCAHCQRTFSRRDHLLRHIRNQHRDVEEDLLRTWPPADENTMNSDGGDELVSAEVLL NEEDNEDEVVGEAFQCNTNPISSNEDDGEEANGANQTLWLHIKPEPCLEAEEVDLAMQ LKLEKKRRRREKAEAQAETSIDRTVKNEHIAIGDSQFSIKEENQLVGSDDEAPMGVED FMKLHVSGELPLSDEERFDGFADDDSDLDDDDDDDDEEDAGDDDDGEFRLKQEPLDGE KPLKKAKSGRRRRRRNKDEPNPDNRCEVCQRTFSRHCHLLRHKLSHLEKKPHNCPHCP KAFARSDHLKAHVQSLHSNKEHKCSLCEAAFSRLDALERHKVSKHNGEGLEPGSELKL QLAEHTCEYCSKRFSSKTYLRKHTLLHTDFLYACKTCDETFRERAQLREHEKTHTGQR NFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRFCVKAFPRATDLKVHERYHTGTKPN LCNTCGKSFHRAYNLTIHMRTHTGERPYKCDQCPKSFTQSNDLKAHIRRHTGERYKCP HCDAYFLQLYNMRNHCMSAHNKHIETKTGRLQRTGLLDDGGQSHLTTVVMPPARYPNE LDPQLAATAAATAAGGAESTSSTTVIHSPGTYNATAAAPANTFDGANFTPTAVNTPAP FGAFNFPPAVMAHLMYNQGGSSQHSQSGSDAGK" ORIGIN 1 ccagtatgac ggcactcgcg agcacaacaa acgcttcgta ttgttaaaat aaaagaaaaa 61 ttatgaaaat tcagcagcaa ttgtgctaat tgtcgatgcc cacatgcaat agcaaagatc 121 gaaggacgcg caacagccat ggcaacgcca cagccgcagc cgcagctgga gttgggttcg 181 tgccaggagg cgcaaactga gccggcggtc agcaagttgg tttcccagtt agagcccctg 241 accacaatgg acaccgtgga cgcggagcgc gtctgccgcg tgtgcctaaa ggatgtatcg 301 ttggaggggg agctacactt catcttcaac gaaacgcccg tcgagcagga cgcaaatctg 361 gcccgcatcc tggacgagtg caccctgcac cagtgcgagc gaaacgacgg catgccccca 421 catatgtgca gctcctgcgt ggaggcggcc cgcaacgcct accgcttcaa gcggcacgcg 481 gagcgttcct actgctcgct ggtcgcattg ctgggccggt cgccccagct gaaggcgcga 541 ggagccgagg cggccagtca gacggatcag gtggccttgc tgccatgcga aatgtgccac 601 gaccagttcc tcaacagcct ggagctcagg ctgcaccgca accaggtgca cagaacgacc 661 aaggaggcca cgtcggctgg cacagatggc ctgccatccg aggattttaa gtgcaaattt 721 tgtccgcagc atttcccgca tctccgacag ctgcgcagcc atttggcgcg cagccacgag 781 cagaccgcac gtctacagtg cgcccattgc caacgcacct ttagccggcg ggatcatttg 841 ctgcgccaca tacgcaatca gcaccgggat gtggaggagg atcttttgcg cacctggccg 901 ccggcggacg agaatactat gaacagcgat ggcggagatg agctggtctc tgcggaggtg 961 ctgttaaacg aggaggataa cgaagatgaa gtcgttgggg aagcctttca gtgcaatacg 1021 aatcccattt ccagtaacga agatgatggc gaagaagcca atggggccaa tcaaacgctg 1081 tggctgcaca tcaagccgga accctgcctg gaggcggaag aagtcgacct ggccatgcag 1141 ctaaagctcg agaagaagcg tcgacggcgg gagaaggcag aagctcaagc ggaaacttcc 1201 atcgatcgga ctgtgaagaa cgaacacatt gccatcggcg actctcagtt cagcattaag 1261 gaagagaatc aacttgtggg cagcgatgac gaggcgccaa tgggagtgga agacttcatg 1321 aagctccatg tcagcggaga gctgccgctt agcgatgagg agcggttcga tggttttgca 1381 gacgatgaca gtgaccttga cgatgatgac gacgacgacg acgaggagga cgctggggat 1441 gatgatgacg gagaattccg gttgaaacag gagccgctgg atggcgaaaa gccgctgaag 1501 aaggccaagt ccggcaggcg gcgacggcgg cgcaacaagg acgagcccaa tcccgataac 1561 cgctgcgagg tgtgccagcg caccttctcg cgccactgcc acctgctgcg ccacaagctg 1621 tcgcacctgg agaagaagcc ccacaactgc ccgcactgcc ccaaggcgtt cgcgcgcagc 1681 gaccacctca aggcgcatgt gcagagccta cacagcaaca aggagcacaa gtgttcgctc 1741 tgtgaggccg ccttctcgcg cctggacgcc ttggagcgtc acaaggtcag caaacacaac 1801 ggtgagggcc tggagccggg cagcgaactg aagctgcagc tggcggagca cacttgtgag 1861 tactgctcca agcgcttctc cagtaagacc tatctacgca agcacactct gctgcacacc 1921 gacttccttt acgcctgcaa gacttgcgac gagacattcc gcgagcgagc gcagctgagg 1981 gagcacgaaa agacccacac cgggcagcgg aacttcctgt gctgcatctg cggcgacagc 2041 tttgcccgca acgactacct ccgcgtgcat atgcgacgcc acaacggtga gaagccctac 2101 aagtgccgct tctgtgtcaa agcctttccc cgtgccaccg atctcaaggt ccatgagcgt 2161 taccacacgg gcaccaaacc taatctgtgc aatacttgcg gcaagagctt ccaccgcgcg 2221 tacaatctaa cgatccacat gcgcacgcac accggcgagc ggccgtacaa gtgcgaccag 2281 tgtcccaaga gcttcacgca aagcaacgac ctgaaggcgc acatccggcg gcatacgggc 2341 gagcggtaca agtgtccgca ctgcgatgcc tacttcctgc agttgtataa tatgcgcaat 2401 cactgcatga gcgcccacaa caagcacatc gagacgaaga cgggacgact gcagcgcacg 2461 ggtctgctag acgatggcgg tcagtcgcat ttgaccaccg tcgttatgcc gccggcacgg 2521 tatccaaatg aactcgatcc ccagctggcg gcgacggctg cggcgactgc agctggcggt 2581 gctgagagca catcgtcgac caccgtcatt cactcgccgg gtacatacaa tgcgacagct 2641 gcagctccag ctaatacctt cgatggagcc aactttacac ccacggcagt gaatacgcct 2701 gctccgtttg gcgcctttaa ctttccgccg gccgttatgg cgcatctcat gtacaaccaa 2761 ggaggaagca gccagcacag ccagagcgga agcgatgcgg gcaaatagct atcgatgctg 2821 aagtgcgtga ttctgctact gctcctgctc ctcctgggct tcacacggct ccaactcatc 2881 ccgaacatca aactattcca gtgtagactt aagctttcct ctgtacataa acggtatccg 2941 aattgggagg agctgttgca ccgcaccggg ctctggccaa ttgaagggtt catcactggc 3001 gcaggcacca cacgtgccgc ccattttaat gtgttaatat gtatttaata gtcaaataag 3061 aactgctcta ctacagtgta ggcggttgga atctttttat aaagcttgca tcagtgcgat 3121 tgtatattag tatattaaaa ttaaattgca catagctccc cctccctcaa acaattgaca 3181 aattgaattg tatattagta tattaaaatt gaagtccaaa tagcaccccc tccctctaac 3241 aattgacaaa tttagttgta tattagtata ttaaaattaa agtgcaaata gctccccatc 3301 cctctaacaa ttaacaaatt tagttgatga tcaaataaat cgtgaaagca tagtaaaaca 3361 tcg //