Dbfetch
LOCUS NM_132300 3566 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster forked end (fend), transcript variant B, mRNA. ACCESSION NM_132300 VERSION NM_132300.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3566) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3566) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3566) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3566) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3566) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3566) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3566) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3566) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3566) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3566) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3566) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3566) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3566) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3566) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3566) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3566) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3566) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3566) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3566) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3566) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3566) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3566) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3566) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_132300.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3566 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3566 /gene="fend" /locus_tag="Dmel_CG12664" /gene_synonym="BcDNA:RH56795; CG12664; Dmel\CG12664; Dromel_CG12664_FBtr0071349_ld14_mORF; ld14; LD14" /note="forked end" /map="8C11-8C13" /db_xref="FLYBASE:FBgn0030090" /db_xref="GeneID:31843" CDS 838..1803 /gene="fend" /locus_tag="Dmel_CG12664" /gene_synonym="BcDNA:RH56795; CG12664; Dmel\CG12664; Dromel_CG12664_FBtr0071349_ld14_mORF; ld14; LD14" /note="CG12664 gene product from transcript CG12664-RB; CG12664-PB; fend-PB; ld14; forked end" /codon_start=1 /product="forked end, isoform B" /protein_id="NP_572528.1" /db_xref="FLYBASE:FBpp0071284" /db_xref="GeneID:31843" /db_xref="FLYBASE:FBgn0030090" /translation="MFHSLVLMACALAALSVAQGAGSARSKSLPLSLSLSVSVSSSLA SASSPGAAADPTAAFTVTATAPTPASAPFAGKQLNRCRQSCYQQLSKDWHYCKDSVDC TNCCQKLVAPFELRILKAQRQESLVLTDIGWDEMIANASRQCLITWEVSGGGLIGNLL TDTARAELSLWPDTVYNIQVKCKHKLTGLMRRSIKLNVDTSQLVGTTTTTTTSKSSIQ RQHLEQPVDHTDALEHSQHIRIPRPTDRVYIISALPTPSELGGVVYPAFGALAFFLAL LVMFLFLRPQRKRFPLDADSADTATLIGRSSSSSRNSMDASTLHV" ORIGIN 1 ttcgttcaga gcagcattaa ccctcgacgg cgacgctcgt ttttcggttg ttcggctcct 61 gaaatcgaaa ttgtaatttc gcacagcgta tacattagat ttttcatcct ttacgtgtcg 121 cgcgtgtgct attcttgtta ttgtcccgtc gtcgcctttt ttttcgtgtg tatacttaac 181 aaaatcgtta caaataagca tttttttcac gtttgttact gttacatctg cttggtaatt 241 aaaagcacaa aagtcaaagc aaataaagca cgttaaagag aacaccgaaa aaagaataac 301 aataacaaat acaaatacaa gtaagctagc ttgttgttgg tgtcgcgcag catgtggagt 361 tacagttaac tgtaacagtt aacggacagc aaagcggcag gcggagaaag aggtgtgtag 421 gagcagtggg agaagcacaa ggagcagccg aagcgaaaag agaggtagag agtaggattt 481 acagcttctt cgcttcacta aatgcagtcg acgctgcgat tattatgtgc cagctccaat 541 aacaacaaac gcagcagcag caaaaaaccg ccgcagcagc agcagcaaca acaacaacaa 601 cagcaccacc acttgatacg aaaataaaca aacaaaatca atcaattaat caatctgctg 661 agcacaccgc tctccacgcc cacacacaca cgcgcaacaa cacaggcaca acaacaacac 721 acacgagtgc aagtcaacgc ccacgcccat tggagaaaaa ggagggagtg gcaggacgac 781 aacaagcaaa ggagtcgttg gagaaaggag gaggcgaacc acgaggacga agacaacatg 841 ttccactcac ttgttttgat ggcctgcgcc cttgccgccc tctccgtcgc ccagggggcg 901 gggtccgctc gatccaaatc gctgccgtta tcgctatcgc tatcggtatc ggtatcctcg 961 tcattggcat cggcatccag tccaggagct gctgctgacc caacagccgc cttcaccgtc 1021 accgcgaccg cccccacccc cgcaagtgct ccctttgccg gcaaacagct aaacagatgc 1081 cgtcaaagtt gctatcagca gctttccaag gactggcatt attgtaagga ttccgttgat 1141 tgcacaaact gctgccaaaa gctggtggca ccattcgagt tgcgtatcct gaaggcccag 1201 cgccaggagt cgctcgtcct aacggacatc ggctgggatg agatgatagc gaatgcctcg 1261 cgccagtgcc tcatcacctg ggaagtgtcc ggcggcgggc tcatcggcaa tctgctaacg 1321 gacaccgcac gggcggaact ctccttgtgg ccggacaccg tctacaacat ccaggtcaag 1381 tgcaagcaca agctcacggg tctgatgcga cgttcgatca agctaaatgt ggacaccagc 1441 cagttggtgg gcacaacaac gaccacgacg accagtaaat cgagtatcca gcggcagcat 1501 ttggagcagc cagtggatca tactgatgcc ttggagcact cgcagcacat tcgcatcccg 1561 cggcccacgg atcgtgtgta tataatcagt gcactgccca cgcccagcga actgggcggt 1621 gtggtttatc cggccttcgg ggcgctggcc ttcttcctgg ccctgctggt catgttcctc 1681 ttcctgcgtc cgcagcgcaa gcgattccct ctggatgcgg acagtgcgga cacggcaacg 1741 ttgataggtc gcagttcgag cagctcgagg aactcaatgg acgcctctac gctgcatgtc 1801 taaggcggag gttgcccgga gaacttgtag tcgtatatat atagatgtct gactatgtga 1861 tattctgcac cccaaaaaca aaaaaaaaaa aacaaacaaa caaaaacaaa aacaaatgaa 1921 caaaggacgc gaagagaact gtgtacatac cccttgccgc gttagttggt cctttcctat 1981 ccaaaatatt aaatcctgga ttttgattcg atatgataga taagatttgg aatcgaatcg 2041 attcgaatcg aattgaattg aattggagag tcaagcaaat ttcgctcaac taagttaagt 2101 tttatcctct gccattcgta gatcccaatg ccaaaccagc gcagtcatat acatatacac 2161 gcatgattaa catacataca tagctctata tacatataca tataccaact atattataca 2221 tttagcgcat ttactatata catacatata catatatcat agttatacaa gcaggagcag 2281 ctagagatca agataaagat acagatgcag atacgtttac ggttatggtt acggatacaa 2341 atatatatat atatactata ttattatata ctatatatat tatattatat tatattatat 2401 aatagactag gggccagcgg ccaaccaact acatacacca aactaaatgc aacaaattgc 2461 tacaaatttt ttgtcaatcg tcgtcgcttg cttgcaaaca tacaaacaat ataaatttgt 2521 ttttatctca ggttaaaaac aaataaatac caattaatac aaatacaaaa tatcatgcat 2581 ctcttttcca tttttcgtcg tcttaaaact taaatcgaaa catagtgcat aaaaagcaaa 2641 acgaaaagaa aaaaaggaat tacaaattaa caaaaaaaaa aaaacgcaac ttaaatcaga 2701 agtaaatatt tttcaaaatt tttaaatgtt tatacctaga caaactcaat tgaattaaca 2761 acaaagtaaa ctattataaa tgacttactg tacttgagca tgtaaaaaca aagtaacaaa 2821 gtaactaaac taaactaaac tgaactaaac tatggttaat ggttaatacg gttaattaaa 2881 gatctaagct gagaaattat aacttcgcta cgcaaaatgc ctgtacatat tttagcccta 2941 atttatttat atttaaacaa tccattgttt tgttaaccta tgattttaag gatatggaac 3001 gttttcctgg ggcaagaaga aatggtgtgt ctaccaacct gagggaatgt tttacttaaa 3061 gtttcaaaga gagagagaga gcgaacaacc taatctaatt aatggattgt tcctgctttt 3121 gatgaaacat aagtttcgga tgtttttagt gtctgctcca atggttgtag ttacaattag 3181 taaatttcga tcaaatcaaa aaaaaaaaaa aaaagaaaaa aaccaatctt ctttccccaa 3241 aatggaatct ccggagtgat gagaaccttg tgtagtgtga acccattgcc atataaaatg 3301 cagtcctagt ttaattttag ttagtttagt taagcgatcc aaatgtgtta cctcttatat 3361 tttttttttt attttttttt tgtgcggcgg actaaatacg aaatatgcca atcacatttt 3421 agatatatac atatatatgt atatatattt atatatactg tgtatgaata aattcggacg 3481 agaaggatgg tagcggatgt gcggcaccct ttcaacattt atcctttatt cgtttattat 3541 gtaaatataa tttgatttgt tattgc //