Dbfetch
LOCUS NM_132199 2453 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster orion, transcript variant A (orion), mRNA. ACCESSION NM_132199 VERSION NM_132199.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2453) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2453) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2453) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2453) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2453) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2453) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2453) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2453) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2453) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2453) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2453) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2453) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2453) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2453) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2453) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2453) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2453) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2453) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2453) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2453) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2453) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2453) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2453) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_132199.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2453 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2453 /gene="orion" /locus_tag="Dmel_CG2206" /gene_synonym="CG2206; Dmel\CG2206; l(1)G0193; l(1)G0327; Orion" /map="7C9-7C9" /db_xref="FLYBASE:FBgn0027280" /db_xref="GeneID:31712" CDS 233..2227 /gene="orion" /locus_tag="Dmel_CG2206" /gene_synonym="CG2206; Dmel\CG2206; l(1)G0193; l(1)G0327; Orion" /note="CG2206 gene product from transcript CG2206-RA; CG2206-PA; orion-PA; lethal (1) G0193" /codon_start=1 /product="orion, isoform A" /protein_id="NP_572427.1" /db_xref="FLYBASE:FBpp0071081" /db_xref="GeneID:31712" /db_xref="FLYBASE:FBgn0027280" /translation="MRFINWVLPLLLATLVALQQPTLTDALIEDVLDIIHVVKEVTSG VLKAWDIVQSSPLAANIDFPLMREKQKKVLQRLKEVSKQIDNTEDQHAQYVALAIESV TSFMHNNAPIMAKMNDISDTINRISSRYQQMQKYEAYKDKLEMSTLITFAEWTVSPNA HSVHHLMDRLHITLLGNEDRSSNTTSTNLLQQLATAYEVSTDQICNTMQSAQQFIYSL YADIALTELKAYTMMEFSWMMLRVYGKGNYTQEAEIMRSEYEKRTERTLKILKDVMLR ADRIVYRCDPTKHVRGVTYDEVTRLLQGYIENEVDLNKEETCRETCDFYQSTRSEGCF KDLYCSRQPKCSGRLYNCRFVDSDMWVCPSPQNSTRRYEFIEYENGRVLGQRGKCTRG TTKVDSWWRYLLWHCSYCFCLCDEEGLKSDRFFNLRDTIADVKRNRVVTGLRFVKQNR IFHLQIQEGELLPRGIVNQSTLEWKPVEKYNVFDRHVKNGVDYHKLSYEKRTIDLDDV DTDDNSFVVTGVRFRVVGTHLNLEAYYSEFDFRTGQLIRPEYNSYWKSNDNTDVSGAR REKLRLSNADVSTRTIAHSIPLSRHNQYIDFTNTGLDKDAAQSTVPFMDIQDVVSNPP VPLAGIGIYYKGRNGYGGFLGPKIITYDFMPHVQVPKNRF" ORIGIN 1 tcccatttgc gttttgattt tcagcgggcg cagttgcgtg ccagcccgtg tctatctgtc 61 tgtctgtgtg tttgcttgtt tgtgcaagca tttaatcata atatttaaaa gacaccccac 121 catcgtcagc acaacatccc caacgatcgt caaatttcgc gctgcaataa ataaataaac 181 attcatatac aaaacgaaac ccaaatagca ctcacgcaca gccggctgca ggatgagatt 241 tataaattgg gtacttcccc tgcttctggc cacgttggtc gccctgcaac agcccacact 301 aacggacgct ctgatcgagg atgtcctgga catcatacat gtggtcaaag aggtcacctc 361 cggcgtcctc aaggcctggg acattgtaca atcctccccg ttggcggcca acattgattt 421 cccactgatg cgcgagaaac agaagaaggt gttgcagcgc ctcaaagaag tcagcaagca 481 aatagacaat accgaagatc agcacgctca atatgttgcc ttggccatcg aatcggtgac 541 tagcttcatg cacaacaacg ctccaattat ggctaagatg aatgatatct cggacacgat 601 caataggatc tcatcgcgct atcagcagat gcagaagtac gaggcttaca aggacaagtt 661 ggagatgtcc acgctgataa cgtttgcgga gtggacagtg tcgccgaatg cacattcggt 721 gcaccatctg atggatcgtc tgcatatcac tctacttggc aacgaggatc gatcttccaa 781 cacaacgtcc accaatctac tccaacagct ggccactgcc tatgaggtgt ctaccgatca 841 aatttgcaat accatgcaat cggcccagca gtttatatac tcactatatg cggatatagc 901 cctgaccgaa ctgaaagcct acaccatgat ggaattctcg tggatgatgt tgcgggtcta 961 cgggaagggc aactacaccc aggaggcgga aatcatgcgt tccgaatatg agaagaggac 1021 ggaacgcaca ctaaaaatac tcaaggatgt gatgctacga gctgatcgta tcgtttaccg 1081 ctgtgatccg acgaaacatg tacggggagt cacctatgac gaggtcacgc gcctccttca 1141 aggctacatt gaaaacgagg tggatttgaa taaagaggaa acttgccgag agacgtgtga 1201 cttttatcag tccacccgca gtgaaggctg ctttaaggat ctctactgtt cccgtcagcc 1261 gaaatgtagt ggtcgtctgt acaactgcag gttcgtagac tccgacatgt gggtgtgccc 1321 gtcgccacag aatagcacgc ggcgctatga gttcatcgag tacgaaaacg gacgcgtcct 1381 tggccagcgg ggtaagtgca ccaggggcac caccaaggtg gacagctggt ggcgttacct 1441 tctctggcac tgcagctact gcttctgcct gtgcgacgag gagggtctga agtctgatcg 1501 tttcttcaat ctgcgggaca cgatcgccga tgtcaagcgc aaccgagtcg tgactggttt 1561 gcgttttgta aagcaaaatc gcattttcca tctgcaaatc caggagggcg aactcctgcc 1621 tcgtggtatt gtcaatcaaa gcactctgga atggaaaccc gtggaaaagt acaacgtctt 1681 tgatcgtcat gtgaagaatg gcgttgatta tcataagttg agctacgaga aacgcaccat 1741 cgatctggac gatgtggata cggatgacaa ttcctttgtc gttaccggcg tgcgattccg 1801 tgtggtgggc acacatctga atttggaggc ctactacagt gagtttgatt tccggacggg 1861 tcagctcatc cggccggagt acaatagcta ttggaagtcc aacgacaata ccgatgtcag 1921 cggcgcacgc agggagaaac tgcgtctgag caacgccgac gtgtctacgc ggacaatagc 1981 acactcgata cctctgtcgc gccacaatca gtacatcgac ttcactaaca ctggactgga 2041 caaggatgcc gcccagagca cagtgccgtt tatggacatc caggacgtgg tctcgaatcc 2101 accagtacca ctagccggca ttggcattta ctacaagggc cgcaacggct acggcggctt 2161 cctgggcccc aagatcatca cctacgactt catgccccac gttcaggtgc caaagaatag 2221 attctaaagc ggagagaagc ggtgctgttt ccatcccgca catatgtcat agcttttttt 2281 tagttgtaca ctacctatca atacacactt gcgtttaact gtcgcatagt ctaagtgaga 2341 tcagaggaga acgaaccgca ggagatgcag aatccggcaa gacaagaata taaaaacaaa 2401 ttatattgaa aataacaaaa gaaataaaaa cgaatgtgaa tctgagaaac cag //