Dbfetch
LOCUS NM_124249 1402 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana x-ray induced transcript 1 (XRI1), mRNA. ACCESSION NM_124249 VERSION NM_124249.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1402) AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E., Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M., Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R., Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J., Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J., Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L., Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B., Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E., Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A., Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M., See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L., Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R., Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R., Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N., Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B., Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H., Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W., Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M., Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K., Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C., Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P. CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington University in St Louis Sequencing Consortium; European Union Arabidopsis Genome Sequencing Consortium TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 823-826 (2000) PUBMED 11130714 REFERENCE 2 (bases 1 to 1402) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1402) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1402) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003076). On Sep 12, 2016 this sequence version replaced NM_124249.2. FEATURES Location/Qualifiers source 1..1402 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="5" /ecotype="Columbia" gene 1..1402 /gene="XRI1" /locus_tag="AT5G48720" /gene_synonym="K24G6.5; K24G6_5; X-RAY INDUCED TRANSCRIPT; X-RAY INDUCED TRANSCRIPT 1; XRI" /note="Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray. Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation." /db_xref="Araport:AT5G48720" /db_xref="GeneID:834930" /db_xref="TAIR:AT5G48720" CDS 502..1302 /gene="XRI1" /locus_tag="AT5G48720" /gene_synonym="K24G6.5; K24G6_5; X-RAY INDUCED TRANSCRIPT; X-RAY INDUCED TRANSCRIPT 1; XRI" /inference="Similar to RNA sequence, EST:INSD:EG429472.1,INSD:EL991291.1,INSD:EH827280.1, INSD:ES145900.1,INSD:EL084051.1,INSD:ES009829.1, INSD:EL280337.1,INSD:ES006755.1,INSD:BU636309.1, INSD:ES010907.1,INSD:EL165135.1" /inference="similar to RNA sequence, mRNA:INSD:BT020567.1,INSD:BT012214.1" /note="X-RAY INDUCED TRANSCRIPT 1 (XRI1); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01990.1); Has 117 Blast hits to 117 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink)." /codon_start=1 /product="x-ray induced transcript 1" /protein_id="NP_199683.2" /db_xref="GeneID:834930" /db_xref="TAIR:AT5G48720" /db_xref="Araport:AT5G48720" /translation="MTEVTLNQEDHSYMFDDENTPVKACSELGYHVTTEDTNRKMEVH SETRSALKRRRMLQFEDQPETSLFSSESFSAILKSSARDDTFDELLPEGSQLIEGFSE DASASSFEGLDLYAEEWYADCLNDAETPMLPDDLNFGSPDVQVDISEYLNVPPETETR EVQRPVTRSSPNVIFKGRKSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDINQKIR NPPAKPKAHIEEPAVIQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG" ORIGIN 1 cgctgcttat ttcatctcga tttggtttat ttttgatttt gatgtgtttc ttggtttttg 61 ttttctcgtt tggatttgtg tgtttgattg attagtacat tcttcgattt ttgtgtgttt 121 ttgtgctttc ttagtctgat tcgtgtgttc tcttgtatgg gtttcactgt aatcgttgtg 181 gtttcgctta gatttggtgg tggttactgg gttttaggtt ttgattgatt tctgtgtttt 241 taatgcgaag atgaaatgtt ggatttgatg ttaattgtga gttaagaaat gtttggtcat 301 ttaatgtttc atcaatcatt taggatttgg attttagctt gtcaatgctc tatcatttct 361 actaaatccc gagtttcgta agccctctct tgtcaaaatg gtgctctatg gtcagaatcc 421 agtagctcct catggaattg gcaagtggat aactataatc accaacctca gtctcatttc 481 tcggatgtgc ctgactgcac gatgactgaa gtcacattga accaagaaga tcactcgtac 541 atgtttgatg atgaaaatac tcctgtgaag gcatgtagcg agttgggtta ccatgtcaca 601 acagaggaca cgaacaggaa aatggaagtg cacagtgaga cacgctctgc tttaaaaagg 661 cgtcggatgt tgcagtttga agaccaacct gaaacatccc ttttcagcag tgagagtttc 721 tctgcaatct taaaatcaag tgctagagat gacacatttg atgagctttt acccgaaggg 781 tctcagctta tagaagggtt ttcagaagac gcttctgcct ctagcttcga gggccttgat 841 ctgtacgctg aagagtggta tgctgattgc ttaaatgatg ctgagactcc aatgctacct 901 gatgacttaa actttggttc acctgatgtt caagtagata tttcagagta tttgaatgtg 961 ccaccagaaa cagagactag ggaagttcag cggcctgtga ctcgatcttc tccaaatgtt 1021 atctttaaag gtaggaaatc gttttcaagg ccagtttcaa agctaccatc ttcaatcatc 1081 tatccatttg cattcatcaa accatgtggg gttcacggtg gaatgactct caaggacata 1141 aaccagaaaa tccgaaatcc accagcaaaa ccaaaggcac acatagaaga gcctgcagtg 1201 atccaaactt cagcattctc agggaaaccc gttgttggaa agactaaaat ccgcaccgaa 1261 ggaggaaaag gaagcatcac gataatgagg actagaggct aaagctaagt taagtaagta 1321 gtaataagct gatagaaggt tttaaaaatt cactgcagaa aacttttaaa ctttttgcct 1381 tattctcaga ggcccttaaa tc //