Dbfetch
LOCUS NM_119391 1539 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana Nucleotide-sugar transporter family protein (AT4G32390), mRNA. ACCESSION NM_119391 VERSION NM_119391.2 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1539) AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G., Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N., Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M., Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R., Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M., Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M., Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W., Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L., Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J., Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I., Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U., Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M., Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C., Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J., Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S., Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A., Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D., Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S., Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O., Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S., Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F., Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T., Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A., Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D., Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P., Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W., Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M., Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E., Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M., Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G., Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A., Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N., Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M., Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S., Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K., Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C., Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D., Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A., Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N., Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M., Martienssen,R. and McCombie,W.R. TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 769-777 (1999) PUBMED 10617198 REFERENCE 2 (bases 1 to 1539) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1539) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1539) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003075). On May 26, 2011 this sequence version replaced NM_119391.1. FEATURES Location/Qualifiers source 1..1539 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" gene 1..1539 /locus_tag="AT4G32390" /gene_synonym="F8B4.90; F8B4_90" /db_xref="Araport:AT4G32390" /db_xref="GeneID:829374" /db_xref="TAIR:AT4G32390" CDS 136..1188 /locus_tag="AT4G32390" /gene_synonym="F8B4.90; F8B4_90" /inference="Similar to RNA sequence, EST:INSD:ES196391.1,INSD:EL061088.1,INSD:EL069434.1, INSD:ES009708.1,INSD:DR362438.1,INSD:DR374759.1, INSD:EL267659.1,INSD:EL248186.1,INSD:EL226358.1, INSD:EL240824.1,INSD:EH902697.1,INSD:ES066970.1, INSD:EL150087.1,INSD:ES159813.1,INSD:ES053163.1, INSD:EL113536.1,INSD:EH983304.1,INSD:EL209790.1, INSD:BP825039.1,INSD:EH944018.1,INSD:EL238348.1, INSD:EH890697.1,INSD:ES151592.1,INSD:EH849035.1, INSD:EL274615.1,INSD:EH839572.1,INSD:EH978635.1, INSD:EH859655.1,INSD:EL982299.1,INSD:EL219850.1, INSD:EH816383.1,INSD:EL990038.1,INSD:EH830236.1" /note="Nucleotide-sugar transporter family protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Drug/metabolite transporter superfamily protein (TAIR:AT2G25520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink)." /codon_start=1 /product="Nucleotide-sugar transporter family protein" /protein_id="NP_194965.1" /db_xref="GeneID:829374" /db_xref="TAIR:AT4G32390" /db_xref="Araport:AT4G32390" /translation="MGKGGALSDGVIKKILLSYTYVAIWIFLSFTVIVYNKYILDKKM YNWPFPITLTMIHMAFCSSLAVILIKVFKIVEPVSMSRDTYIRSVVPIGALYSLSLWL SNSAYIYLSVSFIQMLKALMPVAVYSIGVLLKKESFKSETMTNMLSISFGVAIAAYGE AKFDTWGVMLQLGAVAFEATRLVLIQILLTSKGINLNPITSLYYVAPCCLVFLFFPWI FVELPILRETSSFHFDFVIFGTNSVCAFALNLAVFLLVGKTSALTMNVAGVVKDWLLI AFSWSVIKDTVTPLNLFGYGLAFLGVAYYNHCKLQALKAKDAQKKVQQGDEEEAGKLL EERESEAAAKRNETED" ORIGIN 1 tacattagac agactctctc acaccaaaag tctctaaaaa cacaacacac aaactgcgca 61 ttttatcctg catccctcag acgacgctat cctgcgcacc accgtcctcc tccgttctcc 121 tcctcctccg agacaatggg aaaaggcggt gcacttagcg atggagtcat caagaagatc 181 ctcctctcct acacctacgt cgcgatctgg atcttcctga gcttcaccgt catcgtctac 241 aacaaataca tcctcgacaa gaagatgtac aattggcctt ttccgatcac actcaccatg 301 atccacatgg ctttttgctc ttccctcgcc gtcatcctca tcaaagtctt caaaatcgtc 361 gagcctgttt caatgtctcg agatacttac atcagatctg tagtcccgat cggtgctctg 421 tactcgcttt ctctctggct ctccaattcc gcttacattt acctctccgt ctccttcatt 481 cagatgctca aagctctaat gcctgtcgct gtttactcaa tcggagtcct tcttaagaaa 541 gaatcgttca aatcggagac gatgactaat atgctctcga tctctttcgg tgttgcgatt 601 gctgcttatg gtgaggctaa gttcgatact tggggagtta tgcttcagct tggtgctgta 661 gctttcgaag caacgaggtt ggttttgatt cagatcttgc tcacttctaa aggaatcaat 721 cttaatccaa tcacttcatt gtactacgtt gctccttgtt gtttggtgtt cctcttcttc 781 ccttggatct tcgtcgagct tccgattctt agggaaactt cgagtttcca ctttgatttc 841 gtgatttttg ggactaattc cgtatgtgca tttgctttga accttgctgt gttcctcctc 901 gttggaaaga cctcggcttt aacaatgaat gttgctggtg tggttaagga ttggctattg 961 attgccttct cttggtctgt gattaaagat acggtgactc cgcttaatct ctttggttac 1021 gggcttgcgt tcttgggtgt tgcgtattac aatcactgca agttacaggc gttgaaggct 1081 aaggatgctc agaagaaggt tcagcaaggt gatgaagaag aagctgggaa gcttttggaa 1141 gagagggaaa gtgaagctgc tgcgaaacgg aatgaaacag aagactgatt gagttgatga 1201 tcataaggaa aggtttgtga atttgatgaa tgtgtggaat tcagaggaat aagagttgaa 1261 gtgttaggat gattttggta gctttggagg aaaattttca acaggatttt gcgcatcatc 1321 tttggttcac ttctttgctt aggtatgatc gtctttctta ttgtcaatct ctctggtttt 1381 gagttttagt tgctatgtta cttttaagtt atggctgatt atatttacat attttctttg 1441 tttcttatga atctattttg gtttactttt ataatgccat tgagatcctg tttggttcta 1501 agttattatc aagattcaag ataaagatgt taaaagcat //