Dbfetch
LOCUS NM_104189 1596 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana Core-2/I-branching
beta-1,6-N-acetylglucosaminyltransferase family protein
(AT1G53100), mRNA.
ACCESSION NM_104189
VERSION NM_104189.3
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1596)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (bases 1 to 1596)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1596)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1596)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (bases 1 to 1596)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003070).
On Sep 12, 2016 this sequence version replaced NM_104189.2.
FEATURES Location/Qualifiers
source 1..1596
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
gene 1..1596
/locus_tag="AT1G53100"
/gene_synonym="F8L10.4; F8L10_4"
/db_xref="Araport:AT1G53100"
/db_xref="GeneID:841744"
/db_xref="TAIR:AT1G53100"
CDS 291..1562
/locus_tag="AT1G53100"
/gene_synonym="F8L10.4; F8L10_4"
/inference="similar to RNA sequence,
mRNA:INSD:BT015074.1,INSD:BT015898.1"
/note="Core-2/I-branching
beta-1,6-N-acetylglucosaminyltransferase family protein;
FUNCTIONS IN: acetylglucosaminyltransferase activity;
INVOLVED IN: carbohydrate biosynthetic process; LOCATED
IN: membrane; EXPRESSED IN: 7 plant structures; EXPRESSED
DURING: 4 anthesis, petal differentiation and expansion
stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase,
family 14 (InterPro:IPR003406), Core-2/I-Branching enzyme
(InterPro:IPR021141); BEST Arabidopsis thaliana protein
match is: Core-2/I-branching
beta-1,6-N-acetylglucosaminyltransferase family protein
(TAIR:AT3G15350.2); Has 949 Blast hits to 948 proteins in
119 species: Archae - 0; Bacteria - 46; Metazoa - 553;
Fungi - 0; Plants - 316; Viruses - 14; Other Eukaryotes -
20 (source: NCBI BLink)."
/codon_start=1
/product="Core-2/I-branching
beta-1,6-N-acetylglucosaminyltransferase family protein"
/protein_id="NP_175718.2"
/db_xref="Araport:AT1G53100"
/db_xref="GeneID:841744"
/db_xref="TAIR:AT1G53100"
/translation="MLLSQDHKILFNGVRKYVIMEKKYVFSFVITSLVCVVLLATSFN
IGLMSSLRPPINGTLSSFPKNDSNVVGKQPREDDKLPRFAYLVSGSKGDLESLWRTLR
ALYHPRNQYIVHLDLESPVDERSELASRISNDPMYSKAGNVYMITKANLVTYTGPTMV
ANTLHACAILLKRTPDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSSLGW
KYKKRAMPLIIDPGLYMLNKSNVLLVRPNRSLPSAFKLFTAWMALSHAFVEYIIYGWD
NLPRTLLMYYTNFVSSPEGYFHTVICNVPEFSKTAVNHDLHYIAWDKPPRQHPRMLSQ
RDMGKMISSGSAFGRKFRRNDTVLDKIDKELLIRINEDGFTPGGWCGGKPECSVVEDV
ARIRPSSGAVRLKELVDRLVTEAKLGKNQCV"
ORIGIN
1 ctacgaaatt tccacttctc ttttgatgaa catacaaagg ttttgttttt atttttggca
61 tattttcatt ttcattattc attctctctc tattatataa ttctaattca cacaatagtg
121 tttttaactg tcttatgttt cttcaccaaa cgtatcaaac caaagcaaag ttctttcttc
181 ttcttctctt gcaccaatac agacgaaaaa aaactcagga attagtgtct gatgatgcta
241 gtggcctaat tcgagcttga gctgaggatt ttgattcagt ttttggtgtc atgcttttgt
301 ctcaagatca caaaattctc ttcaatgggg tacgtaaata tgtaatcatg gagaagaaat
361 atgtattttc atttgttatc acatctcttg tctgcgttgt tctccttgca acttccttca
421 acattggttt aatgtcttca cttcgaccac cgattaatgg aactttatca agtttcccca
481 aaaatgattc gaacgttgta ggaaaacaac ctcgtgaaga cgacaagctc ccacgtttcg
541 cttaccttgt ttcaggatct aaaggagatc ttgaaagcct ttggagaact cttagagcat
601 tgtaccatcc aagaaaccaa tacattgttc acttggatct tgaatcaccg gttgatgaga
661 gatcagagtt agcttctcgc atttcaaacg atcctatgta ttcaaaagca ggaaatgtat
721 atatgataac taaagctaat cttgtgactt ataccggacc aacaatggtg gcgaatacgc
781 ttcacgcatg tgcgattctt cttaaaagaa ccccggattg ggattggttt atcaatctta
841 gtgcttcgga ttatcccctc gtgactcaag atgatctgat tcatacattt tcgacattgg
901 accggaacct taactttatc gagcacacaa gttccttagg ctggaaatac aagaagcggg
961 caatgccatt aataattgat cctggactct atatgttaaa caaatcaaac gttttattgg
1021 ttagacctaa tcgaagttta ccttctgctt tcaagttatt taccgcttgg atggctctat
1081 cgcacgcatt cgtggagtat atcatatacg gttgggacaa tttaccaaga actttactca
1141 tgtactacac caatttcgtt tcttctcctg aaggttactt ccatacagtc atatgtaacg
1201 tgcctgagtt ctccaaaacc gcggtgaacc atgatcttca ctacatcgca tgggacaagc
1261 caccgaggca gcatcctcgt atgttgtctc aaagagacat gggaaagatg atttcgagcg
1321 gatctgcatt tggtcggaag ttcagaagaa atgatactgt tttggataag attgataagg
1381 aactgcttat acggataaac gaagacggtt ttactccagg cggttggtgc ggtgggaaac
1441 cagagtgctc ggttgtcgaa gatgtggcta ggatcaggcc tagctcaggg gctgtgaggc
1501 tcaaggagct tgtagatagg ttagttacag aggctaaatt aggtaagaat caatgtgtat
1561 aaagaatcaa gcagcttgga gagaatcttg cagttc
//