Dbfetch
LOCUS NM_104020 1356 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana sucrose-phosphatase 1 (SPP1), partial mRNA. ACCESSION NM_104020 VERSION NM_104020.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1356) AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S., White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L., Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F., Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R., Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J., Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B., Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J., Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L., Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S., Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X., Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J., Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G., Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H., Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H., Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T., Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G., Fraser,C.M., Venter,J.C. and Davis,R.W. TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 816-820 (2000) PUBMED 11130712 REFERENCE 2 (bases 1 to 1356) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1356) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1356) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 5 (bases 1 to 1356) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). On Apr 24, 2008 this sequence version replaced NM_104020.2. COMPLETENESS: incomplete on the 5' end. FEATURES Location/Qualifiers source 1..1356 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /ecotype="Columbia" gene <1..1356 /gene="SPP1" /locus_tag="AT1G51420" /gene_synonym="ATSPP1; F5D21.9; F5D21_9; sucrose-phosphatase 1; SUCROSE-PHOSPHATASE 1" /db_xref="Araport:AT1G51420" /db_xref="GeneID:841567" /db_xref="TAIR:AT1G51420" CDS 1..1272 /gene="SPP1" /locus_tag="AT1G51420" /gene_synonym="ATSPP1; F5D21.9; F5D21_9; sucrose-phosphatase 1; SUCROSE-PHOSPHATASE 1" /inference="Similar to RNA sequence, EST:INSD:CF651652.1,INSD:N97257.1" /note="sucrose-phosphatase 1 (SPP1); FUNCTIONS IN: phosphatase activity, magnesium ion binding, sucrose-phosphatase activity, catalytic activity; INVOLVED IN: sucrose biosynthetic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: petal, leaf whorl, root, flower, cultured cell; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sucrose-phosphate synthase (InterPro:IPR006380), Sucrose-6-phosphate phosphohydrolase C-terminal (InterPro:IPR013679), HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Sucrose phosphatase, plant/cyanobacteria (InterPro:IPR012847), Sucrose-phosphate phosphatase (InterPro:IPR006378); BEST Arabidopsis thaliana protein match is: Sucrose-6F-phosphate phosphohydrolase family protein (TAIR:AT2G35840.3); Has 854 Blast hits to 850 proteins in 328 species: Archae - 0; Bacteria - 616; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink)." /codon_start=1 /product="sucrose-phosphatase 1" /protein_id="NP_175553.1" /db_xref="Araport:AT1G51420" /db_xref="GeneID:841567" /db_xref="TAIR:AT1G51420" /translation="MERLTSPPRLMIVSDLDETMVDHHKDPENLALLRFNSLWEDAYR HDSLLVFSTGRAQTMYKKLRKEKPLLTPDVIITSVGTEIAYGNSMVPDDNWVEILNKK WDRGIVQEETSKFPELTLQGETEQRPHKLSFNIDKSKVKAVTKELSPRLEKRGVDVKF IFSGGNAFDVLAKGGGKGQALAYLLKKLKTEGKLPINTLACGDSGNDTELFTIPNVYG VMVSNAQEELLEWYAENAKDNANIIHASERCAGGITQAIGHFKLGPNLSPRDVSDFLE CKADNVNPGHEVVKFFLFYERWRRGEVENCTTYTSSLKASCHPSGVFVHPSGAEKSLR DTIDELGKYYGDKKGKKFRVWTDQVLATDTTPGTWIVKLDKWEQTGDERKCCTTTVKF TSKEGEGFVWEHVQQIWSEETEIKDDSNWII" ORIGIN 1 atggagcggt taacatctcc tcctcgtcta atgatagtct ccgatcttga cgaaaccatg 61 gttgatcatc ataaagatcc tgagaatcta gctctattga ggtttaattc attgtgggaa 121 gacgcttatc gacacgactc tcttcttgtt ttctcaacag gaagagctca aacaatgtac 181 aagaaactga gaaaagagaa acctttgtta acccctgatg ttatcattac ttctgtagga 241 actgagatag cttatggtaa ctcaatggtt cctgatgata attgggttga aatcttgaat 301 aagaaatggg accgaggaat cgtccaagaa gaaaccagca agttccctga gttaactctt 361 cagggtgaaa cagaacagag gccacacaag cttagcttta atattgacaa gagtaaggtt 421 aaggcagtga cgaaagagct atctccgcgg ttagagaaac gtggggttga tgtcaaattc 481 attttcagtg gaggaaacgc tttcgatgtt ttagcaaaag gtggaggaaa gggacaagct 541 cttgcttatc tgctaaagaa gctcaagact gaaggaaagc tccctatcaa cactcttgct 601 tgtggggact ctggaaatga tactgaacta tttaccattc ccaatgttta tggtgtcatg 661 gtaagcaatg ctcaagaaga gttgttggag tggtatgctg aaaatgcgaa agacaatgca 721 aatataatcc atgcgagtga gaggtgtgcg ggtgggatta cacaagccat tggtcacttt 781 aagcttggtc caaatctttc tccaagagat gtttctgact tcttggagtg caaggcggat 841 aatgtgaacc cgggtcatga ggttgtgaag tttttcttgt tctacgagag atggagacga 901 ggtgaagttg agaactgtac gacatacaca tcaagtctca aagcttcatg tcatccttct 961 ggtgtctttg ttcatccatc tggtgctgaa aagtctctca gagacaccat tgatgagctt 1021 ggcaagtact atggagacaa aaaagggaag aagtttcgtg tttggactga tcaggtcttg 1081 gcaacagaca caactccagg gacttggata gtaaagcttg ataaatggga gcagactggg 1141 gatgagagga aatgttgcac aacaactgtc aaattcacct caaaggaagg agaagggttt 1201 gtgtgggaac atgtgcagca aatatggtcg gaggaaacag agattaagga tgatagcaac 1261 tggatcatct gaatcttttt tttttgttaa ttcccttcat tacaaagaaa aataagccaa 1321 actatatact ggaagacttt taaataaaag taattt //