Dbfetch
LOCUS NM_102928 2003 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana Tetratricopeptide repeat (TPR)-like superfamily protein (AT1G31920), mRNA. ACCESSION NM_102928 VERSION NM_102928.5 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 2003) AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S., White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L., Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F., Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R., Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J., Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B., Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J., Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L., Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S., Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X., Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J., Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G., Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H., Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H., Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T., Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G., Fraser,C.M., Venter,J.C. and Davis,R.W. TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 816-820 (2000) PUBMED 11130712 REFERENCE 2 (bases 1 to 2003) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2003) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 2003) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 5 (bases 1 to 2003) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). On Sep 12, 2016 this sequence version replaced NM_102928.4. FEATURES Location/Qualifiers source 1..2003 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /ecotype="Columbia" gene 1..2003 /locus_tag="AT1G31920" /gene_synonym="F5M6.8; F5M6_8" /db_xref="Araport:AT1G31920" /db_xref="GeneID:840082" /db_xref="TAIR:AT1G31920" CDS 174..1994 /locus_tag="AT1G31920" /gene_synonym="F5M6.8; F5M6_8" /inference="Similar to RNA sequence, EST:INSD:ES188460.1,INSD:ES154282.1,INSD:EL104721.1, INSD:BP788671.1,INSD:F20165.1,INSD:EH922673.1, INSD:EH959959.1,INSD:AV559059.1,INSD:EH821755.1, INSD:EL214605.1,INSD:EL234719.1,INSD:EH863978.1" /inference="similar to RNA sequence, mRNA:INSD:BX814462.1,INSD:AK226634.1" /note="Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G66520.1); Has 36071 Blast hits to 13961 proteins in 258 species: Archae - 0; Bacteria - 3; Metazoa - 83; Fungi - 93; Plants - 35305; Viruses - 0; Other Eukaryotes - 587 (source: NCBI BLink)." /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /protein_id="NP_174474.1" /db_xref="Araport:AT1G31920" /db_xref="GeneID:840082" /db_xref="TAIR:AT1G31920" /translation="MIKAPILQSLLASRDDLTHNPEVNNFGGKEQECLYLLKRCHNID EFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDDPCTFDFNT MIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFK LGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSECL LLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLV DMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPD HVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALE TIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQG QMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEW QLKFEGYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMC SDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW" ORIGIN 1 agaaccttca aatactttta cttgtggctc atattttcca tgaaaatctc gagggatgag 61 attcaaaaac cctcattaaa aactttcaaa tctttcttat ataatcatag attccagaat 121 ttgacatttt cggacaccaa aatccctagt ttcttaatgg ttatgaggag aggatgatca 181 aggcaccaat tctacagtct ctattggctt ctagagacga tttaactcat aacccagaag 241 tcaacaactt tggagggaaa gagcaagaat gtttatacct cttgaagaga tgccacaaca 301 tagacgagtt caagcaagtt cacgccagat tcatcaagct aagtttgttc tattcttctt 361 cattctcagc cagcagcgtt ctcgcaaaat gcgctcactc gggatgggag aacagtatga 421 attacgcagc ttccatattc agaggcatag atgatccttg tacctttgat ttcaatacaa 481 tgattagagg gtatgttaac gtaatgagtt tcgaggaagc attgtgtttt tacaatgaga 541 tgatgcagag agggaatgag ccagataatt tcacgtaccc gtgtcttctc aaggcttgca 601 ctcgtttgaa gtcaattcga gaagggaagc agattcatgg gcaagtgttt aagctcggtc 661 ttgaagctga cgtgtttgtt cagaatagtt tgatcaatat gtatggaaga tgtggagaga 721 tggaactttc ttctgcggtt tttgagaaac tggaatctaa aacagctgcg tcgtggagct 781 cgatggtctc tgctcgtgca ggcatgggaa tgtggagcga atgcttgtta ctattccgtg 841 gaatgtgtag cgaaacgaat ttgaaggcgg aagaaagtgg aatggttagt gctctcttag 901 cttgtgccaa caccggtgca ctcaatctag gaatgagcat ccatggcttc ctgttgagaa 961 acataagcga actcaacata atagtccaaa cttcactagt agatatgtac gttaaatgcg 1021 ggtgcttaga caaagcgttg catatatttc agaagatgga aaagaggaat aatttgactt 1081 acagtgcaat gatctcagga cttgcgttgc acggagaagg agaatcagct ttaagaatgt 1141 tctctaagat gatcaaagaa ggtttagaac cagatcatgt tgtgtatgtc agtgttctca 1201 atgcatgtag tcactctggt cttgttaaag aaggtcgtcg agtcttcgca gaaatgttaa 1261 aggaaggtaa ggtggagcca acggctgagc attacggctg tcttgtagat cttctgggaa 1321 gagccggatt gctcgaggaa gcattggaga ctatccaaag cataccaatt gagaaaaatg 1381 atgttatctg gagaaccttc ttaagtcaat gcagagttcg tcagaacatt gagctaggcc 1441 aaatagcagc tcaagaactg cttaagctaa gctcacacaa cccaggtgac tatttgctga 1501 tctctaactt gtattcacaa ggtcaaatgt gggatgatgt agccagaact cgaacagaaa 1561 tcgctatcaa gggtttgaaa caaaccccgg gttttagcat cgtcgagcta aaaggtaaaa 1621 cccacaggtt cgtttcacaa gatcgatcgc acccaaaatg caaagaaatc tacaagatgc 1681 tacaccagat ggaatggcaa ctaaaattcg aaggatattc accagacttg acacagatat 1741 tgctaaacgt agatgaagaa gaaaagaaag agagattaaa aggacacagc caaaaggtgg 1801 ctattgcctt tggactattg tatacacctc cagggtctat cattaaaata gctagaaacc 1861 tgaggatgtg tagtgactgt cacacatata caaagaaaat ctccatgatc tacgaaagag 1921 agattgttgt aagagacaga aacaggtttc acctgtttaa aggtggaact tgttcttgta 1981 aagattattg gtaggtttaa atc //