Dbfetch
LOCUS NM_080324 2555 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster Ras-like protein A (Rala), transcript variant C, mRNA. ACCESSION NM_080324 VERSION NM_080324.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2555) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2555) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2555) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2555) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2555) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2555) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2555) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2555) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2555) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2555) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2555) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2555) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2555) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2555) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2555) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2555) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2555) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2555) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2555) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2555) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2555) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2555) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2555) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_080324.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2555 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2555 /gene="Rala" /locus_tag="Dmel_CG2849" /gene_synonym="24639550; anon-EST:fe1H4; CG2849; D-RalA; Dm RalA; Dmel\CG2849; dRal; Dral; DRal; Drala; DralA; DRala; l(1)G0174; l(1)G0373; l(1)G0501; P48555; ral; Ral; Ral-a; rala; ralA; RalA; RALA" /note="Ras-like protein A" /map="3E5-3E6" /db_xref="FLYBASE:FBgn0015286" /db_xref="GeneID:31332" CDS 301..906 /gene="Rala" /locus_tag="Dmel_CG2849" /gene_synonym="24639550; anon-EST:fe1H4; CG2849; D-RalA; Dm RalA; Dmel\CG2849; dRal; Dral; DRal; Drala; DralA; DRala; l(1)G0174; l(1)G0373; l(1)G0501; P48555; ral; Ral; Ral-a; rala; ralA; RalA; RALA" /note="CG2849 gene product from transcript CG2849-RC; CG2849-PC; Rala-PC; Ras-related protein; anon-fast-evolving-1H4; Ras-like protein A" /codon_start=1 /product="Ras-like protein A, isoform C" /protein_id="NP_525063.1" /db_xref="FLYBASE:FBpp0070559" /db_xref="GeneID:31332" /db_xref="FLYBASE:FBgn0015286" /translation="MSKKPTAGPALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK ADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITDDESFQATQ EFREQILRVKNDESIPFLLVGNKCDLNDKRKVPLSECQLRAQQWAVPYVETSAKTREN VDKVFFDLMREIRSRKTEDSKATSGRAKDRCKKRRLKCTLL" ORIGIN 1 tccactttca cactagtttc tttcaagcaa gcaaaaccaa cggaacttta attgcggtgt 61 gcggcgaacg agaagagaaa ccgaaaagca gccaatttac tgttgcgttc cgatcctgtt 121 aattcatcag ttgccgattc tccgatcgcg cctgtaactt ttttgtttag tttagtgcat 181 caagtgcgag ataacacagc aaagcaacaa caaacgaagc gacaggccaa agcggacgcg 241 caaaatacaa taaaaaggaa ggaagaaaac gaaatacagc gagtgagtga tcccgccatc 301 atgagcaaga agccgacagc cggaccggcg ctccacaagg tcataatggt gggcagtggc 361 ggcgtgggaa agtccgccct cacactgcag tttatgtacg atgagttcgt cgaggactac 421 gagcccacca aggccgatag ctataggaaa aaggttgtgc tggacggcga ggaagtacaa 481 atagatatat tggatacggc tggccaggag gattatgccg ccatcagaga taactacttt 541 cgcagcggcg agggtttcct ttgcgtcttc tccatcacag acgacgaaag cttccaggca 601 acccaggaat tcagagaaca aatcttgcgg gtgaagaatg atgagagcat accgttcctg 661 ctggtgggca acaagtgcga tctgaatgat aagcgcaagg tgccgctgag cgagtgccag 721 ctgagggcgc agcagtgggc ggtgccctat gtggagacct cggctaaaac ccgcgaaaat 781 gtggacaagg tattttttga tttgatgcgc gaaataagat cacgaaaaac cgaagattcg 841 aaagccacga gcgggcgtgc taaagataga tgcaagaagc ggagacttaa gtgtacccta 901 ctttaggcat taggtatttt atgatctaat cagggatatt tcatcgcgta aaaaacaacg 961 tcagacggac gtgaaacagc cgccgaagcc caactctcat tgctgccaac tgctgtagga 1021 tgatgaagaa caacaacgga caacaaccat acgatgaaca acaaaacaac tgcagcagca 1081 acaaattgga aaataacaca acggccacac ggatgataac accaacacac aggatatgaa 1141 ggatatggag aacggaacca tatgttaata caatttaatt aattaacttt gagaacacca 1201 gtacacacat acgaacagca acagatatta aaactatttg ccacactcag aaactcaaaa 1261 tccataatcc acgttaactt tcattgtaat atacataaat atatatatat atatatatat 1321 gatttaggca acaagttttt ttttcgaaaa catcaagcga aaagcacaca gacgggcaac 1381 ttacgaattc tgtcgtttat ttttggttac ttattttttt ttttttttga atcatcgatg 1441 tttgtttgtg ttgcctccgt aaaaaaaaaa tgttaaaact aaaacctaaa gctgaagcta 1501 acgcttaaac atattaaata taatcatcaa tcgtagacaa ctaaagaagc ccataataat 1561 tatgcaattt aaaacttgct acagatattt ctcttgttta attatatata cgcatacatt 1621 tttttgtaat atttttaaag tttaatagca aaatgcaaac cacacaaacc aacaagaaac 1681 cacacagaaa agctttttat aaatatatct aaatatatat ttaaatatat ataaaatagt 1741 ataaaacact taaaatccta gcgaagaaac aacagaggaa agcggggaga aagaaaaaac 1801 agaaaaacaa caaatatctc caattattaa ttgtaaacga agtgaatcga aacaaatttt 1861 taatgcaatt tttgtaattt tctaaaccga aagcaaatgt gtagggattt ataaacaaca 1921 acaaaaccaa tgagtaataa tggtacacac taatgtttct gacaagcttt ggagactttc 1981 cgttacaaat agttattttc tttgccctgg aacacatcca atatatgtat atgtatgtat 2041 gtatgtatgt ttagcaatta ctcccgattg atttgcttct ttgtttactt ttgtataact 2101 gcattctgta ttgtaatatt taagctatta ttattatgat aattattatt attattaaat 2161 atataagtta tatatgcaat caagtgatgg ttggttcaat ttttgtatgt atgaagcata 2221 ttcctagttt accctgtgaa aatttgtgca acacacacga aatctcgacc acgcaaacat 2281 ttgttttatc ctccttacag acttatgcga atatccaaaa caaaatcaaa cagccgcatt 2341 ttttttataa tatatatgta tgtacatgtg catgtatata aatataaaaa ttacaattac 2401 gagagttaaa aaatgtcgat tgatggagtg tacgtttagc ttgactcaga aataaaacga 2461 aaaatatgaa aactaagcgg gaatatttat actttgtttg ggcctgccta aaagtatgca 2521 cagtgtcatg gaattttacc gttaaataaa cagcg // Unexpected Error when closing connection to refseq from NCBI E-utilities. Non-zero exit status returned (255). STDERR: "http status: 429 Too Many Requests at /nfs/public/rw/es/projects/jdbfetch/util/ncbi_refseq_fetch.pl line 124."