Dbfetch
LOCUS NM_079548 3238 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster doublesex (dsx), transcript variant C, mRNA. ACCESSION NM_079548 VERSION NM_079548.5 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3238) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3238) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3238) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3238) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3238) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3238) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3238) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3238) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3238) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3238) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3238) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3238) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3238) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3238) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3238) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3238) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3238) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3238) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3238) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3238) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3238) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3238) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3238) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3238) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). On Jan 16, 2013 this sequence version replaced NM_079548.4. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3238 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3238 /gene="dsx" /locus_tag="Dmel_CG11094" /gene_synonym="CG11094; Dmdsx; Dmel\CG11094; Dsx; DSX; dsxF; DSXF; dsxM; DSXM; Hr; ix-62c" /note="doublesex" /map="84E5-84E6" /db_xref="FLYBASE:FBgn0000504" /db_xref="GeneID:40940" CDS 875..2158 /gene="dsx" /locus_tag="Dmel_CG11094" /gene_synonym="CG11094; Dmdsx; Dmel\CG11094; Dsx; DSX; dsxF; DSXF; dsxM; DSXM; Hr; ix-62c" /note="CG11094 gene product from transcript CG11094-RC; CG11094-PC; dsx-PC; hermaphrodite; intersex-62c; double sex; doublesex" /codon_start=1 /product="doublesex, isoform C" /protein_id="NP_524272.4" /db_xref="FLYBASE:FBpp0081258" /db_xref="GeneID:40940" /db_xref="FLYBASE:FBgn0000504" /translation="MVSEENWNSDTMSDSDMIDSKNDVCGGASSSSGSSISPRTPPNC ARCRNHGLKITLKGHKRYCKFRYCTCEKCRLTADRQRVMALQTALRRAQAQDEQRALH MHEVPPANPAATTLLSHHHHVAAPAHVHAHHVHAHHAHGGHHSHHGHVLHHQQAAAAA AAAPSAPASHLGGSSTAASSIHGHAHAHHVHMAAAAAASVAQHQHQSHPHSHHHHHQN HHQHPHQQPATQTALRSPPHSDHGGSVGPATSSSGGGAPSSSNAAAATSSNGSSGGGG GGGGGSSGGGAGGGRSSGTSVITSADHHMTTVPTPAQSLEGSCDSSSPSPSSTSGAAI LPISVSVNRKNGANVPLGQDVFLDYCQKLLEKFRYPWELMPLMYVILKDADANIEEAS RRIEEGQYVVNEYSRQHNLNIYDGGELRNTTRQCG" ORIGIN 1 caaagatttc agatcggtca gcagcagcag aagcaaaaag ctcggctcgc gactcgcgcg 61 gaacgttttt tagaagttgt gcggattaaa agagcagatt tgtatttgat tggccctatg 121 aatattgatt tttgcacgtt gctatcggtg ctgaatcagt cgcttaattg gactacaatc 181 ggattcttca gtcgcgcgtt ttaccggcgg cttttgcaag tcagttgaga tcgtgcaaca 241 ctttctgtgt gattttttgt ttgttgtgtg acgactatta attgatattt tgaaacatac 301 agctgaaagt gactgtataa ttggaattgt ggaaagcaag tgttatgtgt gaaatcaaca 361 aaagctaaac ataccaatta ttattctaat ccatcaaaag taatccggca tattcttacc 421 cataatttaa aaaccttaaa agtacataaa tccagctctt aatataaagt tattactaat 481 atataacgta ttttcaaata tcattaaaag tattttgact cttaaatata aagtctttta 541 aaatacacgt aaaacaggtg cttctaaaat caaaagaaag cagcaaaatt taaaagtgag 601 acctaaagtc gaaatatttt ccaatactct tcggacttac ccaataactt aagcttacca 661 ataatttatg caagactaaa ttgcaataaa ggcatataat ccctaacaat ataactctca 721 ttgaaaaaat cttaaataat ttaaacccca gtgaattaaa cagcaaaaga cagttaatag 781 acacagaaaa tgctaataaa aatagcataa taaaagcacg gttacataaa cttagacgct 841 cgaacattta cataggatat cagaagctgg aatcatggtt tcggaggaga actggaatag 901 cgacacgatg tccgactcgg acatgatcga ctcaaagaac gacgtctgtg gcggagcctc 961 cagttccagc ggcagctcga tttcgccgag gacaccaccg aactgcgccc gctgccgcaa 1021 tcatggccta aagatcaccc taaagggaca caagcggtac tgcaagttcc gctactgcac 1081 gtgcgagaag tgccgactga cggcggaccg ccagcgggtg atggctctgc aaacggcctt 1141 gaggcgagcc caggcgcagg atgagcagcg ggcgctgcac atgcacgagg tgccgcctgc 1201 caatccggcg gccacgaccc tcctgagtca tcaccatcat gtcgcagctc ccgctcatgt 1261 ccacgcccac catgtgcacg cccatcacgc acacggagga caccactcgc atcacggaca 1321 tgtcctgcac caccagcagg cagcggcggc cgcagcagca gctccgtcgg ctccagcctc 1381 ccatctgggt ggctccagca cggccgcttc cagcatccac ggtcacgccc acgcgcacca 1441 cgtccacatg gcagctgctg cagccgcctc ggtggctcag caccagcacc aaagccaccc 1501 acactcgcac caccaccacc accagaacca ccaccagcat ccgcatcagc aaccggccac 1561 gcagaccgcc ctgcgatctc cgccgcacag cgaccatggt ggcagtgtgg gtccggccac 1621 cagcagctcc ggcggtggag cacccagttc cagcaatgcg gcagcggcca cctcgagcaa 1681 cggatccagc ggcggtggag gaggaggcgg agggggcagc tcgggtggcg gggcaggagg 1741 tggtaggtca tcgggaacat cggtgatcac tagcgccgat caccacatga ccacggtgcc 1801 tacgcccgcc caatcgctgg aggggtcctg cgactcgtcg tcgccctcgc cgtcgtccac 1861 ttccggtgca gccattttgc cgatctcagt ttccgtcaat cgaaagaacg gcgccaatgt 1921 gcccttgggc caagacgttt tcctagacta ttgccaaaag ctattagaaa aattccgcta 1981 tccttgggag ctgatgccac tcatgtatgt gatattaaag gacgcagacg ccaacattga 2041 agaggcttcc cggcgaatcg aagagggcca atacgttgtg aatgagtact cccgtcaaca 2101 taatttgaat atctatgacg ggggtgagct gcgcaacaca acgcggcaat gtggatgata 2161 atttttcatt aactagagta acgaatacta ctttgccccg atatttatta ttgttcagca 2221 tcacatatta gcttaatgct tcggtgaaat cgcgcgaatt taacttttat aacttagagt 2281 tgagtaactt agagttttat ggagcaaaac ctctgtaaat aaatcgaatt tatcggtaaa 2341 ctaaagcgcg acttggacta tcttcaatca acaagccaaa tatgtcgatg tgtgacagcc 2401 gttctacgcg tcagctttct tcaatcaaca ttaccccgtg ctgagatgtc tggcctcaat 2461 gttaataatc tcaatctaca atcaacattc tcttctcttc aatcaacaat ccgcaaacgg 2521 atctaatcaa caatcaacat agcccttgcc gccaacgaat aatataatca aaggacaaag 2581 gacaaaatgt agtaaacgtt tttaaaaaat attcgaaata cgcacgccaa atcaacgatc 2641 aacatttcaa cacgttcgca tcacaaatct gcgcatcggt tgtatagctt tagtttaacc 2701 ttatttaagt ttggcattac tcagtttatt gggctaatca cagtctaatt aaagccattg 2761 aaagcgcctc acttcagtca tttatgcttt tattgtttac ttaagtactt aactgaatct 2821 aagtacaaaa taatgtttct ttcgtaagca gcactaaatt gatcaacaaa ggggatcgag 2881 aagaaaacta ggatatacac actcattcga ataggcatac aagccaatct caaatttctt 2941 ctttgcgtgt gaatttgtat cttagcaagg caattgcata gtaacccttg aagaaatgat 3001 aactactttc cgggggtctg ggtatcaaaa ctgttgtgag atagtgcaca aattataaat 3061 atatttaagt tagtgtttca tcgatgtctt gcgaaactct aattgtaata ttgcattaca 3121 acgaaaattc ttattgacat tgtaaaatat tgttacgacc ttaagtaaga tttagcccaa 3181 cggaatatta taaaaaggat aaacctgaaa tgtcagaaat aaactatttt ccttaaac //