Dbfetch
LOCUS NM_079209 3546 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster lamina ancestor (lama), transcript variant B, mRNA. ACCESSION NM_079209 VERSION NM_079209.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3546) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3546) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3546) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3546) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3546) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3546) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3546) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3546) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3546) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3546) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3546) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3546) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3546) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3546) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3546) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3546) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3546) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3546) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3546) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3546) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3546) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 3546) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3546) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 3546) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 3546) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). On Jan 16, 2013 this sequence version replaced NM_079209.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3546 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3546 /gene="lama" /locus_tag="Dmel_CG10645" /gene_synonym="CG10645; Dmel\CG10645" /exception="dicistronic gene" /note="lamina ancestor" /map="64C12-64C13" /db_xref="FLYBASE:FBgn0016031" /db_xref="GeneID:38610" CDS 1193..3169 /gene="lama" /locus_tag="Dmel_CG10645" /gene_synonym="CG10645; Dmel\CG10645" /note="CG10645 gene product from transcript CG10645-RB; CG10645-PB; lama-PB" /codon_start=1 /product="lamina ancestor, isoform B" /protein_id="NP_523933.3" /db_xref="FLYBASE:FBpp0076863" /db_xref="GeneID:38610" /db_xref="FLYBASE:FBgn0016031" /translation="MLKVVGASWQKTRIGTYILIGAGLLVIGAFFIGYMERPEYDGTY CATALWTKQVGFQIENWKQQNDLVNIPTGVGRICYKDSVYENGWAQIEVETQRTYPDW VQAYAAGMLEGSLTWRNIYNQWSNTISSSCERDESTQKFCGWLRDLLTTNYHRLKRQT EKAENDHYWHQLHLFITQLEGLETGYKRGASRARSDLEEEIPFSDFLLMNAAADIQDL KIYYENYELQNSTEHTEEPGTDQPKNFFLPSATMLTKIVQEEESPQVLQLLFGHSTAG SYSSMLRIQKRYKFHYHFSSKLRSNTVPGVDITFTGYPGILGSTDDFYTIKGRHLHAI VGGVGIKNENLQLWKTVDPKKMVPLVARVMAANRISQNRQTWASAMSRHPFTGAKQWI TVDLNKMKVQDNLYNVLEGDDKHDDAPVVLNEKDRTAIQQRHDQLRDMVWIAEQLPGM MTKKDVTQGFLVPGNTSWLANGVPYFKNVLELSGVNYSEDQQLTVADEEELTSLASVD KYLRTHGFRGDLLGSQESIAYGNIDLKLFSYNARLGISDFHAFAGPVFLRFQHTQPRT LEDEGQDGGVPPAASMGDERLSVSIEDADSLAEMELITERRSVRNDMRAIAMRKIGSG PFKWSEMSPVEEGGGHEGHPDEWNFDKVSPKWAW" ORIGIN 1 atcagtctgt ccgctgcgca tagtcgaaac ggaaggaaaa tcgctttaat tctctgtgat 61 ctgtgtttgc gtgttgaact cgagttttca gttcgttgtt atctgttcaa tttcatttgg 121 atgtgcaatt gccgacgcta aaaatatata cgtaacgcgt gcaagaaatt gagagtattg 181 cccgacgctc aactaaatta caaaaaagaa attttatttc atatataaac gccacgttct 241 cgcgttctaa caaactcccc aataaaaaac acactcaagc agcacattac atatactcga 301 ccacgctgta taattagtta ctagccgttg atatttccaa tacgccgcat agcaacaata 361 accatatcaa acatttcgat aatctgatgt gacacaagtt tttgcatcga aatagccgtg 421 tgtgtgtgtg tgtgtgtgtt tggttcccat tcgccgccaa tcaaaccaat cgcattgaga 481 gtgtaatccg ggaaaagtta tacacaccta aacctgcgcc ttttcaatgt agcccttcat 541 ggataattaa cacgtgagcg ttgtgtgact atatagcaaa atcgtgttaa aatcgtgttc 601 gcagtggctg aatttagcag cgatccaacg aatagtgtca tctcgaaccc agacaccccc 661 cacaccccct gcgaatttct cttatttgtc ggcgcggaat ttgcctgagt cacgagccat 721 ttcaattttc cgttcttcaa atgggttgac ttgtgatatt gctgcttcct ggacccggga 781 aacaaaaggg atacaaattg aacctcaaaa gacatagcca agctgcaata aaaccatcgc 841 caaaccaccg ccgccattta aagtcaatag ttagcacgaa tataaccacc tagaaaccgt 901 tggaatctct gcttgaaagc agcgcaccac ccatgaacca atcggccaag gcgctcaaca 961 gcgtggccac cgagatcagc acctcctgct cctccagcac cttcaccaac catccacaga 1021 accacctgca cactggccac ctgattgccc atcgtcttgg acactcctac gccgctcgtg 1081 ccgatcacaa ttatctggga taagttctgc aattggaatc tgactggtga aacacgtttc 1141 tcgagaggat tttccatttt tgcatcgtag cagcttcacg acggccggca caatgttaaa 1201 agtcgttggt gcatcgtggc aaaaaacgcg gatagggacc tacatcctaa tcggtgctgg 1261 tctcttggtc atcggagcct tcttcattgg atatatggag aggccggagt acgatggcac 1321 ctactgtgcc accgctctgt ggaccaagca ggtgggcttc cagattgaaa actggaagca 1381 gcagaatgat ctggtcaaca ttcccacggg tgttggcagg atttgttata aggattcggt 1441 ttatgagaat ggttgggccc aaatcgaagt ggagacgcaa agaacttatc cggattgggt 1501 gcaggcctat gccgccggaa tgctggaggg ctcgctgacc tggaggaaca tctacaatca 1561 gtggtccaat accatttcct cttcttgcga gcgcgatgaa agcacccaga aattctgcgg 1621 ttggctcagg gaccttttga ccaccaacta ccatcgcctg aagaggcaga ctgaaaaggc 1681 tgagaatgat cactactggc atcagctgca tctgttcatc acccagctgg agggcctgga 1741 aactggctac aagcgaggag catcccgggc acgatccgac ttggaggagg agataccatt 1801 ttccgatttt ctgctgatga acgccgctgc cgatattcag gatctcaaga tctattacga 1861 gaactatgag ctgcagaata gtacggaaca taccgaggaa cccggaacgg atcagccaaa 1921 gaacttcttt ctgccgagtg ccaccatgct gacgaagatc gtccaggagg aggagtcgcc 1981 gcaggtacta cagttgctct ttggtcacag cacggctgga agttactcct ccatgttgag 2041 aatccagaag cggtacaagt ttcactatca cttctcgtcg aaactgcgga gtaacacggt 2101 gcccggtgtg gatatcactt tcactggtta tcctggcatt ctcggatcca ccgatgactt 2161 ctacaccatc aagggtcgtc atctgcatgc aatcgtagga ggagtgggca tcaagaacga 2221 gaatctgcag ctgtggaaga cggtggatcc gaagaagatg gtgcccttgg tggctcgtgt 2281 aatggccgcc aatcggatat cccagaatcg tcagacttgg gccagtgcca tgtccagaca 2341 tccatttacg ggagccaagc agtggatcac cgttgatctg aacaagatga aggtgcagga 2401 taatctgtac aatgtccttg aaggcgatga caagcatgac gatgctccag tagtgctgaa 2461 cgaaaaggat aggacagcca tccagcagag gcacgatcag ctaagggata tggtttggat 2521 tgccgagcag ctgccgggca tgatgaccaa aaaggatgtt actcagggat tcctggtgcc 2581 cggcaacacg tcctggctgg ccaatggagt gccgtatttc aaaaatgtcc tggagctaag 2641 cggcgtcaac tacagcgagg atcaacagct gacggtggcc gatgaggagg agctgaccag 2701 tctggcgtcg gtggataagt atttgcggac tcatggattc cgtggtgatc tgctgggcag 2761 ccaggagtcg attgcctatg gcaacataga tctgaaattg ttctcctaca atgcccgact 2821 gggcatcagc gatttccatg cctttgcggg tccagtcttt ctgagattcc aacatactca 2881 gcccaggact ctggaggatg agggccagga tggtggtgtt ccacccgccg catccatggg 2941 cgacgaacgg ctcagcgtga gcatcgagga tgcagatagt ctggcggaaa tggaactcat 3001 cacggaacgg cgatctgtgc gaaatgatat gagagccatt gccatgcgaa agattggcag 3061 cggacccttc aagtggtcag agatgagtcc cgtggaggag ggcggtggcc atgaggggca 3121 tcctgatgag tggaactttg acaaggtctc gccgaagtgg gcgtggtagg cgctgaggag 3181 caggtttctt cttttaaccc gtagaaccca atcgaatttg tacccaaaac ccacctccat 3241 ccattttgaa aactggaaag caataattgt cctagatttg gtaattagtg tcctgtcttg 3301 tctcgtataa tttgtgtgtt cctagttggt acatatctta cgtccatagt cttctagtgt 3361 ctactgtact tatgtatgta tgcgtgtcca atcgattatt gtcttccagc tgtacagctt 3421 tttattttcc gtaggtcttt tgtaaattag caacgaaatt ggaaatatat tttttagcaa 3481 caaatttttg tactttagta actattaaca aattgtaaag aaaataaaaa caaaatcatg 3541 aaaaac //