Dbfetch
LOCUS NM_079178 3264 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster sprouty (sty), transcript variant B, mRNA. ACCESSION NM_079178 VERSION NM_079178.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3264) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3264) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3264) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3264) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3264) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3264) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3264) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3264) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3264) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3264) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3264) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3264) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3264) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3264) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3264) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3264) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3264) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3264) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3264) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3264) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3264) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 3264) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3264) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 3264) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 3264) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). On Jul 15, 2014 this sequence version replaced NM_079178.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3264 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3264 /gene="sty" /locus_tag="Dmel_CG1921" /gene_synonym="CG1921; CS3-3; Dmel\CG1921; dSPRY; spry; Spry; Sry; Sty; STY" /note="sprouty" /map="63D2-63D3" /db_xref="FLYBASE:FBgn0014388" /db_xref="GeneID:38424" CDS 1355..3124 /gene="sty" /locus_tag="Dmel_CG1921" /gene_synonym="CG1921; CS3-3; Dmel\CG1921; dSPRY; spry; Spry; Sry; Sty; STY" /note="CG1921 gene product from transcript CG1921-RB; CG1921-PB; sty-PB; dSprouty; calcineurin suppressor, chromosome 3, group 3; sprouty" /codon_start=1 /product="sprouty, isoform B" /protein_id="NP_523902.2" /db_xref="FLYBASE:FBpp0073005" /db_xref="GeneID:38424" /db_xref="FLYBASE:FBgn0014388" /translation="MDRRNGGDPLAPPRPPKLLPRVHRPRAPEPTLSGVDHNAGATAS ALASGASSAAPVAIHNNNSQQQLSISAAASNNNTISIIPASPDFDDYQIHHLTFLPQR PSSLSRNSSTASSTTATGISVSGSGSVSGSSSSFTRRRPPAPVPLNNSISNNNNNSIN NNFLSHFQSAEPASNALGQPPASPVTLAQPRPESERLTNEYVDTPLQHATRSQHPAGQ QDNGQTTTHHLLLLPQRNQHLHLQQHQQHLQQQQQQQQQQQQQQHLQHQQNQQHARLA TTTQATSVGSDHTDGLLHSHLQNSTTKPPASKQPAPPRLGMGLGLGLGLGLNQPIITK QPTPATQKERMHALEELLQPGGAGGNGGPLVMAGDPSLLNPIVCPRCGRCRCEQCQSP RPLPQTWVCNKTCLCSAESVIDYASCLCCAKALFYHCARDNDLDCDDGNGTPCVDNPC SCGPYKRTQRWGWLGALSIFLPCLWFYWPMRGCMKLCEKCYGRFAGRGCRCQGIGGGG AGSGGGVGSIGSTSSMLPIVPLGVNGSGLGGGVSLSGGVTDGGLNQANGKAMDHGCSA ARSILRKGDLTPEKRLLDSSPDY" ORIGIN 1 tcatttcgct tcaaaacctc gtgacgagcg gttgccgcga ttgccgcgtt cgctgtcttt 61 ccgatttcct caaaaagcaa gccacttttt tgtataacta caacattttt tttcgaagca 121 accaaatcat ttagcaaatc gagcaacaat aacctgctaa acaaaacaat tcactaccag 181 aacgcgctaa acaacccgca gatatatatt gaaaatatat ataaaacaag caatcacttg 241 aaaatattgt gtgtggtgaa aagtgagtgt ttatttttgg gaaatagaaa tagaaatagt 301 taaccaagcc aaccaaccaa tcgcttccaa tggaaatcat gtgcctaaaa atgcaaattg 361 ctcgaagaaa atcaacaacg tctatttaaa aaacaaaaaa gtcaactcaa gccaatcaaa 421 tacaaaacgt gttgggaaaa agtaaaaaaa aaataatata aaaatacagc aaatacaaaa 481 tcaaacaaca acagtctctc gcgcacacaa atatttttat aaatctatat atatgtacat 541 atataaaatt gcataaaaat attttttact caagacaacg acgcacacac acgcagcacc 601 gagatacaca gatacattcg ccgctcgcac acacacgcac acataggcga cgacgtggcc 661 ccgctttcgg tgtgttagtg tatctgtgtg tgattgtgcg acgccagctt cgctgatcca 721 ccaacaaaag caacaaccac aacaacacta ccgccggtcg ccaagttgat tattattatt 781 tttttggcca aaaaccaaaa accaaaccaa aacccagcga atatataaaa atacgcggct 841 ggcaaaaata ataacaaaat caaacatagt cgccggcgtc gtttttgtgt taattaaatt 901 tacttttgtg aatgaaatgc gaaagaaagc aaagcgaaaa atcaccttta ataaatgcta 961 aattaaaacc agcagtcgcg atcgcgagta agcatctgaa gaacccccct ctccaaatcg 1021 cctttggatt acactcaaaa gaaacgaatt catcattttg gatacttttc gaaaaataag 1081 gattacacaa cactttcaac tcacatctac ggtgattaat tacggaattt gtaccacgga 1141 ttgcttttga aaatcaataa agcaatcgca gctgtctgaa tctgcaaaag gatgaaggca 1201 aatcaagctg agtccgggcg cagtaactac gatcgacggc attgaggatc tcggatctcg 1261 aggtggagga gcgatctcga tctcgaggtg gagcgaggag cggaggagga gtggaggagt 1321 gcagctgggg gaggagtcct ggttacaaca ctacatggat cgcagaaatg gcggcgatcc 1381 cttggcgcca ccccggcccc cgaagttatt accgcgcgtg catcgaccaa gggcgccgga 1441 gccgacgtta agtggtgtcg accataacgc aggagcaact gcatccgcac tagcatcagg 1501 agcatcatct gcagcacccg tagcaatcca taacaacaat tcacagcagc aacttagtat 1561 tagcgccgcc gcgagcaaca acaatacgat atcgataata cccgcatcgc cggacttcga 1621 cgactaccag atccaccacc tgaccttcct gccccagcga cccagcagtc tgagccggaa 1681 cagcagtacg gcatcatcga ctacggcgac gggcattagt gtctccggtt cgggatctgt 1741 ttcgggttcg tcgtccagct tcacgagacg tcgaccgccg gcacctgtac cgctgaacaa 1801 cagcatcagc aacaacaaca acaacagcat caacaacaac ttccttagtc atttccaaag 1861 cgctgagccg gcgagcaacg ctctgggcca gccgcccgcc tcccccgtca cgctggcgca 1921 accgcgaccc gaatccgaaa ggctaaccaa tgagtatgtg gacacgccgc tgcaacatgc 1981 gacgcgctcg cagcatccgg ctggccagca ggataatggc cagacgacca cccaccacct 2041 gttgctgctg ccccagcgga atcagcacct gcacctgcaa caacaccagc agcacctgca 2101 acagcaacag cagcagcagc aacagcagca gcagcagcag catctgcagc accagcaaaa 2161 ccagcaacat gcgcgactgg cgacgacgac gcaggcgacg tccgttggaa gcgaccacac 2221 cgatggctta ctacattcgc acctgcaaaa tagcaccact aaaccacccg cctcgaagca 2281 gccggcaccg cccagactgg gaatgggcct gggtttggga ttgggtctcg gtctgaacca 2341 gcccatcatc accaagcagc cgacacccgc cacgcaaaag gagcgcatgc acgcgctgga 2401 ggagctgctg caaccaggcg gagccggcgg caacggagga cccctggtga tggccggcga 2461 tcccagcctg ctgaatccca tcgtctgtcc gcgatgcggt cgctgtcgct gcgagcagtg 2521 ccagagcccc aggccactgc cccagacgtg ggtgtgcaac aagacgtgtc tgtgcagcgc 2581 ggagtcggtc atcgactatg cctcctgctt gtgctgcgcc aaggcgctgt tctatcactg 2641 cgcccgggac aacgacctgg actgcgatga tggcaacggc acaccctgcg tggataatcc 2701 ctgctcctgc ggcccctaca agcgcaccca gagatggggc tggctgggag cactgtcgat 2761 cttcctgccc tgcctgtggt tctactggcc catgcggggc tgcatgaagc tatgcgagaa 2821 atgctacggc aggttcgccg gtcggggatg ccgctgtcag ggcatcggcg gaggaggggc 2881 aggttccgga ggcggagtcg gtagcattgg atccaccagc agcatgctgc ccatagtgcc 2941 gcttggggtg aatggcagtg ggctgggtgg cggcgtgagc ctctccggcg gcgtgacgga 3001 tggtggactc aaccaagcca atggcaaggc catggatcat ggatgcagtg ccgccaggag 3061 catactgcga aagggtgacc tcaccccgga gaagcggctc ctggactcca gtcccgacta 3121 ctaagggtcc attccatgtg tccggttttt tacccgagca aaaagcctaa ggcacaaatg 3181 ggatgctgga tcgtggacat atacacccat atatatacgg aaaatattta atatatgatt 3241 taaaaggata tataaaaaaa gagg //