Dbfetch
LOCUS NM_078999 3463 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster vestigial (vg), transcript variant A, mRNA. ACCESSION NM_078999 VERSION NM_078999.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3463) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3463) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3463) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3463) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3463) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3463) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3463) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3463) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3463) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3463) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3463) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3463) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3463) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3463) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3463) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3463) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3463) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3463) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3463) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3463) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3463) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3463) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3463) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3463) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). On Jul 15, 2014 this sequence version replaced NM_078999.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3463 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3463 /gene="vg" /locus_tag="Dmel_CG3830" /gene_synonym="CG3830; Dmel\CG3830; Vg; VG; vg21" /note="vestigial" /map="49E1-49E1" /db_xref="FLYBASE:FBgn0003975" /db_xref="GeneID:36421" CDS 1457..2818 /gene="vg" /locus_tag="Dmel_CG3830" /gene_synonym="CG3830; Dmel\CG3830; Vg; VG; vg21" /note="CG3830 gene product from transcript CG3830-RA; CG3830-PA; vg-PA; vestigial; vestgial; vestigal" /codon_start=1 /product="vestigial, isoform A" /protein_id="NP_523723.1" /db_xref="FLYBASE:FBpp0086898" /db_xref="GeneID:36421" /db_xref="FLYBASE:FBgn0003975" /translation="MAVSCPEVMYGAYYPYLYGRAGTSRSFYQYERFNQDLYSSSGVN LAASSSASGSSHSPCSPILPPSVSANAAAAVAAAAHNSAAAAVAVAANQASSSGGIGG GGLGGLGGLGGGPASGLLGSNVVPGSSSVGSVGLGMSPVLSGAAGHSLHSSHRTHAHS LAHAHTHPHSHTHTHTHQTKEEDLIVPRSEAEARLVGSQQHQHHNESSCSSGPDSPRH AHSHSHPLHGGGGATGGPSSAGGTGSGGGDGGGTGAIPKNLPALETPMGSGGGGLAGS GQGQAQYLSASCVVFTNYSGDTASQVDEHFSRALNYNNKDSKESSSPMSNRNFPPSFW NSNYVHPIPAPTHHQVSDLYGTATDTGYATDPWVPHAAHYGSYAHAAHAHAAHAHAYH HNMAQYGSLLRLPQQYASHGSRLHHDQQTAHALEYSSYPTMAGLEAQVAQVQESSKDL YWF" ORIGIN 1 tgccagtttg ttttttctct tccgattgag cggcagccgg agctctccgt gtttttctct 61 caccgccgcg cgggattttc gatttcggat tttcgatttc agcgtaaacg agaatatcgt 121 aaaattaaaa cgaaacaaaa ccaaaatcct agtgagtgat cgcggcaagt gcagttcatt 181 tgttttccaa gtgccacatc gcaaagcaga ataataatta tagaaataga gatttccgcg 241 gatgctgcaa ttgccaaaat agtgccgttc tccatctcat tttcgctcgc tggctatcgc 301 cctctctctc actcgctctc gcacaatcgg gccgccaaga atttatggaa ttcggcattt 361 tgtggattta gcgaaaatat tttcattgag tgcgccgacc aaatgtttgc tgctcgtttt 421 cggttaaaaa taatcgcaga agccgctgcg ccaaaatctc aagaattcac gtgcgaattc 481 cccagcgcgt atcactttaa ttactattca aattaacaac aacaacaaaa cgatcaaacg 541 aaaattaagt caagttttac cttgtcaaga gatgtgaaat tgttgaatat tttgcaaaaa 601 gtgcactgta acgagaattg agttgattta cgcaagcaac actgaacatc ttattggatt 661 acactaaaaa cattcaagtg ttggcaattc ttcgtcggaa acgcggatga gaaacgaaat 721 tgacgttcca acgccaaagg gaaaaaaaaa ctgaaaaaat agaaaacaac gactaacagc 781 aatcaacaat gtggaaatga taattgcaat tgcctgcaca agcaaacaaa gaagaaagaa 841 gcaagtgaag aaagtcgaag agcgacgagg ggaggaaact gagtcgaaaa gaaaaggaaa 901 ttacccacga acgggaatgg caaatgcata gaaagaagtt tgcgaaaaac aacaaaaaac 961 gtaaacaaaa aacagacaaa aagcaattat agctgctgat acaaacgcga tggtgtttta 1021 caatatgtaa atataattag ccgagcggag ttttcattcc aggaattttg ccagccaaca 1081 aaagaaataa atactacaac tgctgcagaa aaaatacaac aaaaacaaca aaacacgcct 1141 tgacttgaaa gccggtttta taattactcc aagttttagc ccccttccct ccccgcgcgc 1201 tctctatcta tatatctatc tccctctctt cagagagagc attcaatttc aaacccccga 1261 tacgattacg aatccaattg gaaccacgcg tattggcatc acaattccct ccccgctcaa 1321 gtgacaatac caatttaact accatccatc gctaaaccgc aaaagcagtg agccagtgtg 1381 agtgccagtg ccagtgccag tgtgtgtgtg gcagtgagtg gcagttgcag ttgcaagtgc 1441 gcttgccact gcgacaatgg cagtgtcctg ccccgaagtt atgtacggtg cctactatcc 1501 atatctgtac gggcgcgctg gaacaagtcg atcgttctac cagtatgaga ggttcaacca 1561 ggatttgtac tcctcctcgg gcgtcaactt ggccgcctca tcgagtgcct cgggcagctc 1621 ccactcgccc tgcagcccca tcctgccgcc atcggtgagc gcaaatgccg ctgcggcagt 1681 ggcagcggcg gcccacaata gtgcagcggc ggcagtggcg gtcgcagcga atcaggccag 1741 ctcctccggc ggaatcggag gcggtggact cggcggcctg ggaggactgg gcggcggacc 1801 ggcgagcgga ctgcttggca gcaatgtggt gcccgggagc agtagtgtcg ggagcgtggg 1861 gctgggaatg agtccggtgc tgagcggagc ggcgggacac tcgctgcaca gttcgcacag 1921 gacgcacgca cactccctcg cccacgcaca cacgcacccg cactcgcaca cacacacgca 1981 tacgcatcaa accaaagaag aggacctcat cgtgccgcgc agcgaagctg aagcacgcct 2041 ggtgggctcc caacaacatc agcatcataa tgaatcatcc tgctcctccg gtccggactc 2101 cccgcgccac gcccactcgc acagccatcc gctgcacggt ggcggcggag cgacgggcgg 2161 tccatcttcc gcgggtggta cgggctcggg gggcggcgac ggaggcggca cgggggcaat 2221 acccaagaat ctgccagcac tggagacgcc gatgggcagc ggaggcggcg gattggccgg 2281 cagtggccag ggacaggctc aatatctatc ggcctcctgc gttgtgttca ccaactactc 2341 gggcgacacg gccagccagg tggacgagca cttttcccgc gccctcaact acaacaacaa 2401 ggattctaaa gagagcagca gcccgatgtc gaatcgaaat ttcccaccgt cgttctggaa 2461 cagcaattac gtgcacccca tacccgcgcc cacacaccac caggttagcg acttgtatgg 2521 caccgcgacg gacaccggct acgccaccga tccgtgggtg ccgcatgcgg cccactatgg 2581 ttcctatgcc cacgcagcgc acgcccatgc ggcccacgcc cacgcctacc accacaacat 2641 ggcccagtac ggcagtctcc tcaggctgcc ccagcagtac gccagccacg gttccaggct 2701 gcaccacgac cagcagacgg cccacgccct ggagtactcc agctatccca caatggcagg 2761 cctggaagcg caggtggcgc aagtacagga atcgtcgaag gatctttact ggttctaaac 2821 gccacctggc gatggagatc gccgatgtcc ttcggcgagt gtataaacct tgtcctggaa 2881 gatctaagga caccccggat cgaatacaat gtgcgacttt gggtcgggat tttgagagcg 2941 cttcttaagc aaaactgcag tgtctgtgtt tctgtgtgag caaaacaata acaaacgcaa 3001 aggattttga aatttaattt aattttacca taatgtttaa cgttaaacta taattcgtaa 3061 gcttaaaaac aacttgtaaa caaacgattt ttcgcgcatt cgagaccatt tttttcggcg 3121 taatttgatt ttgtaagttt agcatcccat atcagcaatt tagacacaca tacaataatg 3181 actatataca ctatatatat ataaatatac acataaatat ataatggtat tcgtaatcag 3241 cgttggtaac gtttaataat caatatttct tgtatagtta acgcgaactt tgacataaac 3301 ttaaagcaac aacaaagtta gaatttattt tgtttaaact tcgatttttg caaacttcaa 3361 caaactagga taacgaaaat caaattgaga aaaaagcaaa gcagaaaacc caataaaaaa 3421 aaagataaat aaaataaaaa aaaaacacaa tttgaataca atc //