Dbfetch
LOCUS NM_067512 1798 bp mRNA linear INV 22-NOV-2023
DEFINITION Caenorhabditis elegans Sphingosine-1-phosphate lyase (spl-1), mRNA.
ACCESSION NM_067512
VERSION NM_067512.8
DBLINK BioProject: PRJNA158
KEYWORDS RefSeq.
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 1798)
AUTHORS Sulson,J.E. and Waterston,R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282 (5396), 2012-2018 (1998)
PUBMED 9851916
REMARK Erratum:[Science 1999 Jan 1;283(5398):35]
REFERENCE 2 (bases 1 to 1798)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1798)
AUTHORS WormBase.
CONSRTM WormBase Consortium
TITLE Direct Submission
JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics
Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org
REFERENCE 4 (bases 1 to 1798)
AUTHORS Sulson,J.E. and Waterston,R.
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger
Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute
at Washington University, St. Louis, MO 63110, USA
COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This
record is derived from an annotated genomic sequence (NC_003282).
On May 27, 2020 this sequence version replaced NM_067512.7.
FEATURES Location/Qualifiers
source 1..1798
/organism="Caenorhabditis elegans"
/mol_type="mRNA"
/strain="Bristol N2"
/db_xref="taxon:6239"
/chromosome="IV"
gene 1..1798
/gene="spl-1"
/locus_tag="CELE_Y66H1B.4"
/db_xref="GeneID:176857"
/db_xref="WormBase:WBGene00004981"
CDS 7..1665
/gene="spl-1"
/locus_tag="CELE_Y66H1B.4"
/standard_name="Y66H1B.4"
/note="Confirmed by transcript evidence"
/codon_start=1
/product="Sphingosine-1-phosphate lyase"
/protein_id="NP_499913.1"
/db_xref="EnsemblGenomes-Gn:WBGene00004981"
/db_xref="EnsemblGenomes-Tr:Y66H1B.4"
/db_xref="GeneID:176857"
/db_xref="WormBase:WBGene00004981"
/translation="MDSVKHTTEIIVDLTKMHYHMINDRLSRYDPVVLVLAAFGGTLV
YTKVVHLYRKSEDPILKRMGAYVFSLLRKLPAVRDKIEKELAAEKPKLIESIHKDDKD
KQFISTLPIAPLSQDSIMELAKKYEDYNTFNIDGGRVSGAVYTDRHAEHINLLGKIYE
KYAFSNPLHPDVFPGARKMEAELIRMVLNLYNGPEDSSGSVTSGGTESIIMACFSYRN
RAHSLGIEHPVILACKTAHAAFDKAAHLCGMRLRHVPVDSDNRVDLKEMERLIDSNVC
MLVGSAPNFPSGTIDPIPEIAKLGKKYGIPVHVDACLGGFMIPFMNDAGYLIPVFDFR
NPGVTSISCDTHKYGCTPKGSSIVMYRSKELHHFQYFSVADWCGGIYATPTIAGSRAG
ANTAVAWATLLSFGRDEYVRRCAQIVKHTRMLAEKIEKIKWIKPYGKSDVSLVAFSGN
GVNIYEVSDKMMKLGWNLNTLQNPAAIHICLTINQANEEVVNAFAVDLEKICEELAAK
GEQKADSGMAAMYGMAAQVPKSVVDEVIALYIDATYSAPPSTSN"
ORIGIN
1 gttacaatgg attcggttaa gcacacaacc gaaattattg tcgacttgac aaaaatgcac
61 tatcacatga taaatgatag actttctcgg tatgatccgg ttgttctagt gttggccgct
121 tttgggggta cccttgtcta tacaaaagtc gtccatttgt accgaaaaag cgaggatcca
181 attttgaaac gcatgggagc ttatgtattc tcacttcttc gaaaacttcc agctgttcgg
241 gataaaatcg aaaaagagct ggctgctgag aagccaaagc ttattgaatc gattcataag
301 gatgataagg acaagcaatt catttccact cttcccatcg ctccattatc tcaggactca
361 attatggaac tggcgaaaaa atatgaggat tacaacacat ttaacattga cggaggacga
421 gtatctggag cggtttatac tgatcgtcat gctgaacaca ttaatttgct tggaaagatt
481 tacgaaaagt atgcgttctc gaatcccctc caccctgacg tctttccggg agctcgtaaa
541 atggaggcag aacttattcg aatggttctg aacctgtata atggaccaga agattctagt
601 ggaagtgtaa cttctggtgg tactgaaagt attattatgg catgcttttc gtatcgaaat
661 cgtgcacact ctcttggcat tgaacatcca gttattttgg catgtaaaac agctcacgcg
721 gcatttgata aggccgccca tctatgcgga atgcgtcttc gccacgttcc agttgattcg
781 gataatcgtg tcgatttaaa agaaatggag agactaattg attcgaatgt ttgtatgttg
841 gttggctcag cgcctaactt cccatcaggc acaattgatc caattccgga aattgctaag
901 ctcggcaaaa agtatggaat cccggtccac gtggacgcat gtcttggtgg attcatgatt
961 ccatttatga atgacgccgg atacctgatt cctgtattcg atttcagaaa tcccggtgtt
1021 acatctattt cgtgtgatac tcataagtac ggatgcacac cgaaaggttc atcgattgtc
1081 atgtatcgtt ccaaggaact tcatcacttc cagtatttct cggttgccga ttggtgtgga
1141 ggcatctatg ccaccccgac tattgcagga tcccgagctg gagccaacac tgccgtcgcc
1201 tgggccacac ttttatcctt cggtcgagac gaatatgttc gaagatgtgc tcaaattgtg
1261 aagcatacac gaatgctggc cgagaaaatt gagaaaatca aatggatcaa gccttatgga
1321 aaatcggatg tttcattggt ggcgttctcc ggaaatggtg tgaatatcta cgaagtttct
1381 gacaaaatga tgaagctcgg atggaatttg aacactctgc agaatccagc ggcaatccac
1441 atttgtttga caatcaatca agcgaacgag gaagttgtga atgcgttcgc cgtcgacctt
1501 gagaagattt gtgaagaact cgctgcaaaa ggtgaacaaa aagctgacag tggaatggct
1561 gcgatgtatg gaatggctgc gcaagtacca aaatcagtag tggacgaggt tatcgctctg
1621 tacattgacg caacttattc agctccacct tcaacttcta attaattact ttttccattg
1681 aattttctct atttgcacca atatatctgt gatttttttt gtagtaaata aatatatact
1741 attctgtgat ttttttctgt agtaaataaa tatatatacc aattataacg aattaatt
//