Dbfetch
LOCUS NM_064287 1424 bp mRNA linear INV 22-NOV-2023
DEFINITION Caenorhabditis elegans C-type LECtin (clec-4), mRNA.
ACCESSION NM_064287
VERSION NM_064287.4
DBLINK BioProject: PRJNA158
KEYWORDS RefSeq.
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 1424)
AUTHORS Sulson,J.E. and Waterston,R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282 (5396), 2012-2018 (1998)
PUBMED 9851916
REMARK Erratum:[Science 1999 Jan 1;283(5398):35]
REFERENCE 2 (bases 1 to 1424)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1424)
AUTHORS WormBase.
CONSRTM WormBase Consortium
TITLE Direct Submission
JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics
Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org
REFERENCE 4 (bases 1 to 1424)
AUTHORS Sulson,J.E. and Waterston,R.
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger
Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute
at Washington University, St. Louis, MO 63110, USA
COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This
record is derived from an annotated genomic sequence (NC_003280).
On Sep 4, 2019 this sequence version replaced NM_064287.3.
FEATURES Location/Qualifiers
source 1..1424
/organism="Caenorhabditis elegans"
/mol_type="mRNA"
/strain="Bristol N2"
/db_xref="taxon:6239"
/chromosome="II"
gene 1..1424
/gene="clec-4"
/locus_tag="CELE_Y38E10A.5"
/db_xref="GeneID:189654"
/db_xref="WormBase:WBGene00012583"
CDS 60..1337
/gene="clec-4"
/locus_tag="CELE_Y38E10A.5"
/standard_name="Y38E10A.5"
/note="Confirmed by transcript evidence"
/codon_start=1
/product="C-type LECtin"
/protein_id="NP_496688.1"
/db_xref="EnsemblGenomes-Gn:WBGene00012583"
/db_xref="EnsemblGenomes-Tr:Y38E10A.5"
/db_xref="GeneID:189654"
/db_xref="GOA:Q9NAK5"
/db_xref="InterPro:IPR000859"
/db_xref="InterPro:IPR001304"
/db_xref="InterPro:IPR016186"
/db_xref="InterPro:IPR016187"
/db_xref="InterPro:IPR018378"
/db_xref="InterPro:IPR035914"
/db_xref="UniProtKB/TrEMBL:Q9NAK5"
/db_xref="WormBase:WBGene00012583"
/translation="MQFYSVLLLVSLLLLLTISEASYPPVCTSGFTLINGKCLRIFVD
VSTHTAAEKTCKGYGATLVTVKNSIDNRAIADFTGNNANLFWMGLYCFDSDVSKCLWD
DATGSAEVYDNFAAGFPHIALGNCVYYSVQGALAGMWLSSDCNDRRSFICELPASHAD
PCPYNYNGFCYTFHNTASTYTKGQKICEQECGNLASIHSANENRYIMTFGGRATKEDL
LLGGMWPADDVYNWVDGSLWEYENFDPINVRDSVCVIMSNGDSRPIALGMWYSGECKN
EYSVVCKRPAGIQCPPNPTIVPVTPMPAVQSFCNSSVMAPSEITSPHFPYNYYNSDFC
SYQISTLGSYNVLLRFSTFDTEKVNDVVTVYDGDSTNDPVIGVYAGSFYPFTVISTGN
KMLVTFKTDKSNTRQGFSGRITSYSTTESGERD"
ORIGIN
1 agacgccgag agctgcttaa atagcaaagt cgcagttttc tccttatagt catttgatta
61 tgcaatttta ttccgtccta cttctcgttt cccttctatt actgctcaca atcagtgaag
121 catcttatcc accagtctgc actagtggat tcacattgat caatgggaaa tgtctgagga
181 tatttgtgga tgtttcgacg catactgcgg ctgagaaaac ctgcaaggga tatggagcga
241 cactggtgac tgtgaagaat tctattgaca accgagccat cgcggatttc accggaaaca
301 acgccaacct attctggatg ggactttact gtttcgatag tgacgtttca aagtgcttat
361 gggatgatgc tactggatcc gctgaggtct atgacaattt tgcggctgga ttcccccaca
421 tcgccctcgg aaactgcgtt tactactctg tgcaaggcgc cttggcaggc atgtggctga
481 gcagtgactg caacgatcgc cgatctttca tttgtgaact accggcttct catgcagacc
541 catgcccata caattacaat ggcttctgct acactttcca caataccgcc tcaacttata
601 ccaagggcca gaagatttgc gagcaagagt gtggaaactt ggcctcaatt cactctgcta
661 atgaaaaccg gtacattatg acatttggcg gacgtgctac taaagaagat ctcctactcg
721 gaggcatgtg gccagctgac gacgtataca attgggtgga tggttcactg tgggagtacg
781 aaaatttcga tccaataaac gtcagagatt cagtttgcgt cataatgtca aatggtgact
841 cgagacctat cgcccttgga atgtggtaca gtggagaatg caaaaacgag tatagtgtcg
901 tctgcaagag acctgccgga atccaatgtc ctccaaaccc aaccatcgtc cccgtgacac
961 caatgccagc agtccaatcg ttctgcaatt ctagcgttat ggctccaagt gaaatcacat
1021 caccccactt cccatataac tactataact ctgacttctg cagctatcaa atatccacac
1081 taggatctta caatgtgctc ctcagatttt caacatttga cactgaaaag gtcaacgatg
1141 ttgtgacggt ttacgatgga gattccacga atgatcctgt gatcggagtc tatgctggat
1201 ctttctaccc gttcacagtg atatccaccg ggaacaagat gcttgtcact tttaagacag
1261 acaaatcaaa tacaagacaa gggttcagcg gacgaattac ttcctattcg acaacagaaa
1321 gtggagaacg cgattaattt tttgatatat atatagatag catattgtta atttggatat
1381 aaaaactaat gtatttatat taatgaaaaa cttgttgaag ttaa
//