Dbfetch
LOCUS NM_058820 2909 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans SSD domain-containing protein (ptr-2), mRNA. ACCESSION NM_058820 VERSION NM_058820.5 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 2909) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 2909) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2909) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 2909) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003279). On Sep 4, 2019 this sequence version replaced NM_058820.4. FEATURES Location/Qualifiers source 1..2909 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="I" gene 1..2909 /gene="ptr-2" /locus_tag="CELE_C32E8.8" /db_xref="GeneID:171950" /db_xref="WormBase:WBGene00004217" CDS 3..2804 /gene="ptr-2" /locus_tag="CELE_C32E8.8" /standard_name="C32E8.8" /note="Confirmed by transcript evidence" /codon_start=1 /product="SSD domain-containing protein" /protein_id="NP_491221.1" /db_xref="EnsemblGenomes-Gn:WBGene00004217" /db_xref="EnsemblGenomes-Tr:C32E8.8" /db_xref="GeneID:171950" /db_xref="GOA:P91129" /db_xref="InterPro:IPR000731" /db_xref="InterPro:IPR001036" /db_xref="InterPro:IPR003392" /db_xref="UniProtKB/TrEMBL:P91129" /db_xref="WormBase:WBGene00004217" /translation="MAWDCVERRAASLFRQLGFLICDHPLPFFVFPLLFTAAMGVGLL HLNPLSDAVYLFTPLGAQSKMERMSIHEKWPLTDNNYIPGRAVTQSREIQVTALARND SNILDPKFANAVYQLDKYIQTRVRVLHNGHYYSYKNLCLQYKNGGCPSNKHVHILSDL HNHGFNITYPYFRFGSEGGYIGSSLGGVTVMKGENETDILASAKAWFMIYHLKFHPEE MSYISGEWELELGRMLTQYPEDPYISITYFHSQTLADELKRNADTLIPRFIISITLLI VFSTLCSLSFIDGSFSIDWVLSKPILSILGVVSAGIAILTGVGFLSLMGMPYNDIVGV MPFLVLAVGVDNMFLMVAAVRRTSRTHTVHERMGECLADAAVSILITSSTDVLSFGVG AITTIPAVQIFCVYTGVAIFFAFIYQITFFAACLALAMKHEASGRNSLFLIEAVSAEK KTSLSTFQRLFNLGSVPDHSASHDVKQPLTSRFFGEWYAPVLMHPVVRGIAMVWFVIY LLGASYGCSRIKEGLEPVNLLVEDSYAIPHYRLLEKYFWKYGQQVQIVINNAPDLRNH TSRDRVHAMVLDFATSKHAIGMESVQFWLFEMERYYQKELEVQIIDSSFYGLLHHFLA SKTNNPLAEDIYWGPMPDDDNGTMVKSFRFILGMKDLVTTMDQTDATMSFREVAARWP EFNVTTFMPIWMFTDQYIIIIPNTVQNIIIALLVMIVIAVLFIPQPMCSLWVALACAS IDFGVIGYMTLWGVNLDAISMITIIMSIGFSVDYSAHIAYGYVVSREDTAAGRVKEAL SALGWPLSQGAMSTIIAVSVLADIPAYMIVTFFKTVVLSISLGLLHGLVFLPVLLSIF VRGCCIIPSSPHGHPSAQKIEKQIRIAAISSSPLDLRTVAPLRASSPISFPHRLEYTD ESPTVHNRSKNSIKSEHLD" ORIGIN 1 aaatggcatg ggactgtgtg gagcggcgtg cggcgtcgct gttccgacag ctcggattcc 61 tgatctgtga ccatccgctt ccatttttcg tcttcccgct actcttcacc gccgcaatgg 121 gagtcggact tctccacctg aatccactct ccgacgccgt ttacctcttc acaccactcg 181 gcgctcagag caagatggaa cgaatgtcga ttcatgagaa atggccactc accgacaata 241 attatattcc gggacgagct gtgacgcaaa gtcgagaaat tcaagtcaca gcgcttgctc 301 gcaacgattc gaatattctt gatccaaaat ttgcgaacgc agtctatcaa ctcgacaaat 361 atattcaaac aagagttcgt gtccttcaca atggccacta ttacagctac aaaaacctgt 421 gcctacagta taaaaatggc ggttgccctt ctaacaagca tgtacatatt ctttccgacc 481 tacacaatca tggcttcaat attacttacc cctattttcg attcggatca gaaggaggat 541 atatcggaag cagtctcgga ggcgtcactg taatgaaagg agaaaatgag acagatatcc 601 ttgcatcagc gaaagcctgg ttcatgatct atcatctgaa gtttcaccca gaagaaatga 661 gctatatttc gggagaatgg gagctagaac tcggcagaat gctcacccag tatccagaag 721 atccatacat ctctatcacc tacttccact ctcaaactct agcagatgag cttaagagaa 781 atgcggatac actgattcct cgcttcataa tctccatcac ccttctcatc gttttctcaa 841 cactttgctc gctgagcttc atcgacggat cgttctcaat cgattgggtt ctctctaaac 901 cgattctttc cattctcgga gtggtcagtg ctggaatcgc tattctcact ggcgtcggat 961 tcttgtcatt gatgggaatg ccatacaatg acattgttgg tgtcatgcca ttcctcgtgc 1021 tcgctgttgg agttgataat atgtttttga tggtagcagc tgtgagacga acgtctagaa 1081 cgcatacagt gcacgaacga atgggagaat gtttggcaga tgctgcagtt tcgattctta 1141 tcacgtctag cacagatgtt ctttcctttg gagtcggcgc catcacaact attccagccg 1201 ttcaaatatt ctgtgtatac actggagtcg caattttctt tgcatttata tatcagatca 1261 cattctttgc cgcatgccta gcactggcta tgaaacacga agcatccggc cgaaattccc 1321 tctttctcat cgaagctgta tctgccgaaa agaagacatc cctgagcaca ttccaacgat 1381 tattcaatct cggaagtgtg cccgatcatt ctgcatcaca cgatgtcaaa caaccactga 1441 cctctcgttt cttcggagaa tggtatgctc cagttctgat gcatcctgtg gttcgtggaa 1501 ttgcaatggt ttggtttgtg atctatctgc tcggcgccag ctatggatgc tctcgtatca 1561 aggaaggatt ggagccagtt aatttattgg ttgaggactc gtatgctatt ccacattatc 1621 gacttttaga gaaatatttt tggaaatacg gacaacaagt gcaaattgtg ataaataatg 1681 ctcccgatct tagaaatcat acatctcgtg atcgagttca tgcaatggtg cttgactttg 1741 cgacaagtaa gcatgcgatt ggaatggaat ctgtgcagtt ttggttattc gaaatggaga 1801 gatattatca aaaagagttg gaagttcaaa ttattgattc ctcattttat ggccttcttc 1861 accatttcct agcttccaaa accaataatc cattggcaga ggatatctac tggggaccaa 1921 tgcctgatga tgataatgga acgatggtca aaagcttccg gtttattcta ggaatgaagg 1981 atttagtgac aacaatggac caaaccgacg ctacaatgtc atttagagag gtcgctgctc 2041 gatggccgga gttcaatgtg accactttta tgccaatatg gatgttcact gatcagtaca 2101 ttataattat tccgaacact gttcaaaaca ttattattgc acttttggtg atgatcgtca 2161 ttgccgttct cttcattcca cagccaatgt gctcactttg ggtggctctc gcttgtgctt 2221 ccatcgattt tggagtgatt ggatacatga cgctatgggg agtgaatctg gatgctatat 2281 caatgatcac aattatcatg tcaattgggt tctccgtcga ttattctgca cacattgcat 2341 atggctatgt cgtatccaga gaagatacag cagctggtag agtgaaagaa gcactatcag 2401 ctcttggatg gccactgtct cagggagcta tgtctacaat tatcgcggtt tcagttcttg 2461 ccgatattcc agcatatatg atagttactt ttttcaaaac ggtcgttctc tcaatttctc 2521 tcggtcttct ccatggtctt gttttccttc cagtattgct ctcaatattc gtacgtggat 2581 gttgcataat ccctagctca ccgcatggtc atcccagcgc tcaaaaaatc gaaaagcaaa 2641 tcaggatcgc cgctatctcg tctagtccac tcgatttgcg aaccgttgct ccgctccgcg 2701 cctcgtcacc aatcagcttc ccgcataggc ttgagtacac cgatgaatct ccaactgtac 2761 acaacagatc aaagaattct attaaatccg agcacctaga ctagtctttc ttccaatgac 2821 tctcattaac taattgaata cgtgtatttg tagaatattg tgaatgttct acgttgtttt 2881 taaatatatg tgaatgaata tcttaattg //