Dbfetch
LOCUS NM_001369972 3638 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant B (CG14234), mRNA. ACCESSION NM_001369972 VERSION NM_001369972.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3638) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3638) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3638) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3638) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3638) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3638) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3638) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3638) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3638) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3638) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3638) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3638) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3638) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3638) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3638) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3638) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3638) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3638) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3638) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3638) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3638) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3638) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3638) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3638 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3638 /gene="CG14234" /locus_tag="Dmel_CG14234" /gene_synonym="Dmel\CG14234" /map="18E5-18E5" /db_xref="FLYBASE:FBgn0031065" /db_xref="GeneID:32988" CDS 420..1589 /gene="CG14234" /locus_tag="Dmel_CG14234" /gene_synonym="Dmel\CG14234" /note="CG14234 gene product from transcript CG14234-RB; CG14234-PB" /codon_start=1 /transl_except=(pos:1563..1565,aa:OTHER) /product="uncharacterized protein, isoform B" /protein_id="NP_001356950.1" /db_xref="FLYBASE:FBpp0423139" /db_xref="GeneID:32988" /db_xref="FLYBASE:FBgn0031065" /translation="MRVAADMVYDYGSEDSMSTTHLDWPFLIKGILEGQTCTPTAPEP LAAILWAIFAVFGIVYALLGYRCLRAVGFLSGLLVGANGIFILQDFQITFLGKPADSA LAIVAGLLGAVLGSTYPVASVLISAFAGALLSGAAMAVCVATFPDNEFGYREIYVAVV GGAVICSVLTLCCVKYVTILTSSIVGTAMILSAIDFFTHGLETINWIIGMRPHPSPPP CYGGLLIAAWPVTIVLSIMVQCFITAWRVDHRKRVYMRHHNHPGHAHGAHLPHSQQQA GPNHGIAPVRRSQSRTRETREEARQRKFRYLYQVRTARGDIISQNFVSALQKRIQLSG TETPSERSIKSSSNERNTFRSDRTHFTTIHDPDSELCDKIEIVRDIGXQTSNSYM" ORIGIN 1 taccacaagc tattctggct tggccccgat tgtaacgaat ccgtatcgca cgtcgcagtg 61 cgaaaatgtg tgcaaatact gcaatgtacc cgcagtaaat tggccgcagg atcgcttgac 121 actcgctgca aaaggacatc caggtgctac gccctatttc gcagtcaatc cagccaggtg 181 gtagtatagg tgtacaggca taggtgtaac caaccatgcc cctgcgaacg gtgcaggaat 241 gcggagtcct tttgtgccag tgaagagcaa ccaacacgaa acaacgccac gaagaggaca 301 atccgccagt gctgtgtaga agaacaagaa ccagaacaac aaggacaaga ccaagagcat 361 cgagtacacc agatcgcaga ttccgttgag aagggtccgc caaaaattag tccgccggaa 421 tgagggtggc ggcggacatg gtgtatgact acggcagcga ggactccatg agcaccaccc 481 acctggactg gccctttctc atcaagggca tcctggaggg gcagacgtgc acgcccactg 541 cgccggagcc gctggccgcc atcctgtggg ccatcttcgc cgtgtttggc atcgtgtacg 601 cgctactcgg ctaccgatgc ctgcgcgccg tgggctttct cagtggactg ctggtgggcg 661 ccaacgggat cttcattctg caggacttcc agatcacctt cctgggcaag ccggcggact 721 cggcgctggc cattgtggcg ggtttgctgg gcgcggtgct cggctccaca tatccggtgg 781 cctctgtcct cattagcgcc tttgccggcg ccctgctctc cggcgcagcc atggccgtct 841 gcgtggccac ctttccggac aacgagtttg ggtaccgcga gatctatgtg gccgtggtgg 901 gtggagccgt catctgctcc gtgctgacct tgtgctgcgt gaagtacgtg accattctca 961 cctccagcat tgtgggcacg gccatgatcc tcagcgccat cgacttcttc acgcacggtc 1021 tggagaccat caattggata atcggcatgc ggccgcatcc ctcgccgcca ccttgctacg 1081 gtggcctcct gatcgccgcc tggcccgtca ccattgtgct cagcatcatg gtgcagtgct 1141 tcattaccgc ctggcgcgtg gatcaccgca agcgggtgta catgcggcat cacaaccatc 1201 ctggccacgc gcacggcgcc catctgccgc acagccagca gcaggcggga cccaaccacg 1261 gcatcgctcc cgtccggcga tcccaatccc gcacccggga gacgcgcgag gaggccaggc 1321 agcgcaagtt ccgctatctg taccaggtgc gcacggcccg tggtgacatc atatcgcaga 1381 acttcgtgtc ggctctgcag aagcgcatcc agctgagcgg cacggagacg ccgtcggaga 1441 gatcgataaa gagcagctca aacgaacgaa acacgttccg gagcgaccgc acgcacttca 1501 ccaccatcca cgatccggac tcggagctgt gcgacaagat cgagatcgtc cgtgacattg 1561 gataacaaac aagcaatagc tacatgtaac tatacccgta ggggggctac gggctgcggt 1621 acttgggcgc ggatgtggtc atggtcgggg gacacaactg tatggttgga tagttaaacg 1681 ggattggggg ctctagggag ccgccacgta gagcggcgga ggactcacac aagtacggtt 1741 gcatgtagac tttttaagac gaggcaccaa gtgccggaca caacacaaac ggaagcggaa 1801 atggtggcac agaaccgagt ggatggtcat tggaagcttt aaatatcaga ggatatacga 1861 cggatcttta gctggtttcg catggaagcc ttggagctgg cgccagccac agatcagggg 1921 gacgagatag tctagactaa gattaatcgc atcgtgcaca gctagagtct aagatgatgg 1981 acagcacgga aggaagctgg caggaagctt ttgttctctt cacttaatcg aatgttacta 2041 cagataggaa tacctacact acatatgtat gtagcgatgg gctgcgtgat gcatgattgt 2101 ggtggtggat catgggtgcc tgagattcct gtaactacac tatacccaac gcagtactcg 2161 tagcttctcc ctttttcgta tatagccagg caattgcaat tactaatccg gttcatatct 2221 gtgttataac tctacgatta taatgggatg catcccagct gcaggagttc catttcaact 2281 atctagcatg atatttatat atataagcat tacgttgtaa actccaaaca ctcgatcatc 2341 gcacagcagt ttctcggagg ctcaaggcag gcgaaaatac aatacaatac ctattaagta 2401 caataagaga gggtggggag ggggaggggg aagttggagc catagccatc tagactagta 2461 gtagactaga actaggatta gccagttacc cggatgagcc aaagccacta agccacttaa 2521 ttgtcgatac cagtaaatca caatccgctg caaggggcgc acttggggct cgaccaagtc 2581 agaatccaac gatccgctcg atcagccgtc ttagcgttat ccgtaagatt agcgttcgaa 2641 atatatatat atatatatat atatatatac tttaagacat tagatccatg caaacagcgg 2701 tacaaacttc agaaattcac gctatatatg ctagccgaga cataccaatt taagtgatat 2761 aaagcatttt aaacggtctg attatggggc ttaatcgggt tactagagcg aaatgagtcc 2821 gtgcatctgg ttttcagaag tcttgtggtc gtcttccatc cgcttttgtt tccaagcaac 2881 attacatttc atttcaaagt acggacgtat ttctcaatcc acagtacgga ttaagccctt 2941 ttagctggac acacctacaa ccaataaata gataaagtga tgcgtttagg ggaagaacta 3001 gaactggaag ggttctttct ccaagccgca aagaaggatt ggacattgcc gggcaggaac 3061 ttccatgtcg aatcggttgg tttccaagtc gcaaacacct atactaaata caactcgagt 3121 ttcctgttaa gttgattagc aattagtttc taggaatggc tgccgtccgc aattgttgat 3181 ttattactat cgaagactat agactttata tttccgaatt ttgttctcaa actcaagtgc 3241 ttatactttg attcctatta gttgttcact ctatcctcct gtcgttctaa tgttcaacag 3301 caatgtctaa tgcagcacga taatgcattt aacttcggca aacagtagac gttttgtacg 3361 acacactcaa ttcggtttaa taaaatatat atataaaaaa aaaggataat aactgcaaac 3421 taaagtagtg aaaatcataa aaagagttgc acacatgtat acaccactaa tgaaatccaa 3481 ttaaaaacta atataacaaa aaggccaaaa gcgattataa ccagaaagaa tccgatttcc 3541 gaatgaaatc aagtcttgag acgacgggct gccaaagatt aaacaacttg taatgagcaa 3601 acagaaaagt aatattaaat aaacgatgca ggccacat //