Dbfetch
LOCUS NM_001334392 2499 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana pentatricopeptide (PPR) repeat-containing
protein (AT1G68930), mRNA.
ACCESSION NM_001334392
VERSION NM_001334392.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 2499)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (bases 1 to 2499)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2499)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 2499)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (bases 1 to 2499)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003070).
FEATURES Location/Qualifiers
source 1..2499
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
gene 1..2499
/locus_tag="AT1G68930"
/gene_synonym="T6L1.11; T6L1_11"
/db_xref="Araport:AT1G68930"
/db_xref="GeneID:843226"
/db_xref="TAIR:AT1G68930"
CDS 231..2384
/locus_tag="AT1G68930"
/gene_synonym="T6L1.11; T6L1_11"
/codon_start=1
/product="pentatricopeptide (PPR) repeat-containing
protein"
/protein_id="NP_001320691.1"
/db_xref="Araport:AT1G68930"
/db_xref="GeneID:843226"
/db_xref="TAIR:AT1G68930"
/translation="MIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQP
NLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNT
MMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYAN
VGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKG
LAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQ
DHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFL
DMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGK
CGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLT
GVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGM
PFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDS
VAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDN
GYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHN
ATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW"
ORIGIN
1 aaaaagtctt aacaacgaaa ccagaaatgt tttaagaaga ttccttgttt tcttacaacc
61 caaagaggag acacacacac agatttggaa cgctttgact tgcaagcttc ttctaagaca
121 ctactctagt agtctctcgg agattctatc ttcactctct ggtttattca attaaaccga
181 taaagcaatg cattgggttg ggagctagaa atcagagtcg ttatgtgaag atgatccacg
241 ggaatatcat cagagctctt ccatatccag agacgttttt gtataacaac atcgtccacg
301 cgtatgcgtt aatgaaaagc tccacttatg cacgccgagt gttcgacaga attccccaac
361 caaacctttt ctcctggaac aatcttctct tagcttattc aaaagctggg cttatctcag
421 agatggaaag tacctttgag aagcttcctg atagagatgg tgtcacttgg aacgtgctta
481 ttgaaggcta ttcattgagt ggattggttg gtgcagctgt taaggcttat aatacgatga
541 tgagagattt ttctgctaat ttgactaggg ttacgttgat gacaatgttg aaactttctt
601 ctagcaatgg ccatgttagt ttggggaagc agattcatgg gcaggttatc aaacttgggt
661 ttgagtctta tcttttagtt gggagtccat tgttgtatat gtatgcaaat gttggttgca
721 tctctgatgc aaagaaggtt ttttacgggt tggacgatag aaatacggtt atgtacaatt
781 cgttgatggg tggacttcta gcatgtggaa tgattgaaga tgcactgcag ttgtttcgag
841 gaatggagaa agattcagtt tcttgggcag cgatgattaa aggacttgct caaaacggac
901 ttgcaaagga ggctattgaa tgtttcagag agatgaaagt acaaggcttg aagatggatc
961 agtatccttt tggaagtgta ctgcctgctt gtggaggatt aggagcaata aacgaaggga
1021 aacagattca tgcttgtata atcaggacca attttcagga tcacatttat gtaggtagtg
1081 ctctcattga catgtattgc aagtgtaagt gtttacatta tgcaaagact gtttttgata
1141 gaatgaagca gaagaatgtt gtgtcttgga cagcaatggt tgtgggttat ggccagaccg
1201 ggcgtgctga agaggctgtt aagattttcc ttgatatgca aagaagtgga attgacccag
1261 atcattatac tctgggacaa gcgatcagtg cttgtgccaa cgtaagtagc ttagaagagg
1321 gctcccagtt tcatggaaaa gctataactt ctggcctaat acattatgtc actgtttcaa
1381 attcattggt gactctgtat ggaaaatgtg gagatattga tgattcgact aggttgttca
1441 acgagatgaa tgtcagggat gcagtctctt ggactgcaat ggtttctgcg tatgcgcaat
1501 ttggaagggc cgtcgagact attcagttgt ttgacaaaat ggtacaacat ggtctaaaac
1561 ctgatggagt gactttgacc ggtgttattt cagcttgcag tagggcagga ttagtggaga
1621 aaggacaaag atattttaag ttaatgacaa gtgaatatgg aatagtgcca agtattggtc
1681 attattcttg catgatcgat ctcttcagtc gatctggaag gttagaggaa gccatgcgtt
1741 ttataaatgg gatgcctttt cctccagatg caattggttg gactacttta ctcagcgcat
1801 gtagaaataa aggtaacttg gaaataggta aatgggcggc tgaatcactc atagaattag
1861 atcctcatca tcccgctggt tatacgctat tatcaagcat atacgcttca aaagggaaat
1921 gggatagtgt ggcccagtta agacggggaa tgagagagaa gaacgtgaag aaagaacccg
1981 gacagagttg gatcaaatgg aaaggaaaat tgcacagttt ctcagctgat gacgagtcaa
2041 gtccatattt agatcagata tatgctaagc ttgaggaatt gaacaataaa atcatagata
2101 atggttataa accagatacc agttttgtcc atcatgatgt cgaggaagct gttaaggtaa
2161 agatgcttaa ctatcacagt gaaaggcttg caatagcttt tggattgata tttgtaccct
2221 cagggcaacc tattagagta ggaaaaaatc ttagagtgtg tgtggattgc cacaatgcca
2281 ctaaacatat ctccagcgtc actggtagag agatacttgt cagagatgct gttaggtttc
2341 accgttttaa agatggaact tgctcatgtg gagatttctg gtaggtttta tcttggaatt
2401 ttctgaacat agagcgaagt atgatgaatc tccatcacta gtctgaaata tcaaaacaga
2461 gccaggaaga ttcaattgca ttggactcca attgggtga
//