Dbfetch
LOCUS NM_001316591 3725 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster pre-mod(mdg4)-L, transcript variant B (pre-mod(mdg4)-L), partial mRNA. ACCESSION NM_001316591 VERSION NM_001316591.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3725) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3725) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3725) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3725) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3725) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3725) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3725) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3725) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3725) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3725) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3725) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3725) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3725) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3725) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3725) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3725) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3725) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3725) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3725) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3725) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3725) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3725) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3725) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3725) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on the 5' end. FEATURES Location/Qualifiers source 1..3725 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene <1..3725 /gene="pre-mod(mdg4)-L" /locus_tag="Dmel_CG44880" /gene_synonym="CG44880; Dmel\CG44880" /exception="dicistronic gene" /note="trans-splicing precursor of mod(mdg4)-L" /map="93D8-93D8" /db_xref="FLYBASE:FBgn0266174" /db_xref="GeneID:19835907" CDS <1175..1396 /gene="pre-mod(mdg4)-L" /locus_tag="Dmel_CG44880" /gene_synonym="CG44880; Dmel\CG44880" /exception="rearrangement required for product" /note="CG44880 gene product from transcript CG44880-RB; trans-splicing precursor of mod(mdg4)-L; CG44880-PB; pre-mod(mdg4)-L-PB" /codon_start=1 /product="pre-mod(mdg4)-L, isoform B" /protein_id="NP_001303520.2" /db_xref="FLYBASE:FBpp0390657" /db_xref="GeneID:19835907" /db_xref="FLYBASE:FBgn0266174" /translation="KDQNKGVLLKRTAQGEFLVVNGKSYKKTRAMQYRTYFHCLTRNC PTYYVLVELSRRPRLTRHHEHAQHCLQCY" ORIGIN 1 cgccattttt gttgtagttg ttattttttc gccgtgttgt gttcgctgag tttttgtttt 61 ttgtcaaaca aattgcaagt ctatagttaa caaaaggtgt tgtggcttaa atgtggctaa 121 ctgcagcatg catattaatg tccgaagttt acaatatgtg aattatcctg cgaaaatgca 181 gcgagtaagt gcgtgtggcc ctgcgcgtat gtatgtgcgt ctgtgtgtgt gcaccgattg 241 tcatctttgt tgttgttggt gtctcaaaaa ggaatccctc caaaaaagta ccaaaaagga 301 tgatgttcta tttgaattta atgtgaacta gtgtttttag tgatatttag tgatttttct 361 gctctggtag ttgttgaatt aatgtggaaa gtgctttatg ccccaggtga gtccaccttg 421 ctaccaatca acccttcttg accacaaaag ggatgtctag ccaaacacta gaatattaga 481 ctatcaatcg acttgtagcc agttaaaggc aaactagcta cagccttcta caaatgataa 541 aaataagcgg ctataaatag taagagtgta tcgggaattg cctgcaataa atagtttact 601 cagcacctca aacttccatg tgtttttctc tgggctatac ctttttattt tcaaaccacc 661 cgggtaataa agtcagtttc cttggatcct ccattacagg tcagttcatc ggggatattc 721 cgcgtggcca gtggattgat aagcatgagt acttcttcct gaaaaaccag aagcagggtt 781 ttaacctggt attcaatgga tacatgtaca agaaggaggc cagtttccgg gccacggtca 841 attggatctg ttccgacgga aatggcaagc gtttgaacga gaacaagtgc tccgcgaggg 901 ccatcaccaa gttcgacgga gggatcaagc tggggaagaa tgcccacaat catccgccgc 961 gctttttggg tggcaaggtg cccgctaaac taatgcccaa ggatgctttt tatccgcaat 1021 attaaatgag attacataaa cccgaaagaa tgtcatttgt ccaaaagatt atacccagtt 1081 gcatgcatta cctaccataa gctcattaaa ctcatgtggc agcagtcatt tcatcatcat 1141 accatcttca tcttcgtctt catcctcttc agcaaaagac cagaacaagg gcgtcctctt 1201 gaagcgcacc gctcagggcg agttcctggt ggtcaacggg aagtcttaca aaaaaacccg 1261 cgccatgcag taccgcacct acttccattg cttgaccagg aactgcccga cctactacgt 1321 cctcgtggag ctgagccgac gacctcgact caccaggcat catgagcacg cccagcactg 1381 tctgcagtgc tattaggatg taggatgtgt atgtagtcat aggccgaatc cgcaatgtac 1441 aatataccga ataccatttt accattaaag caatcccaag tgttttattt ccttttctga 1501 actaataatt ccccctaatc caatcatcac gcacaactaa cgaggaaaac tcttcttatt 1561 gtagccaaat tcgactacca gatcagcgtg gatgtgggcg aggccactat gcagctggcc 1621 aacgcctcgt ccgccggagt ggtcaacagc aactctccct tcttcatcgt cagcaagtac 1681 ggcaccaagc agatcatgct caagcaacac accttcaatc gtcacatctg ccgggacgac 1741 gtcacctatt ggcgctgcag ccagttcgca gtgttgcgat gtcgtgcgcg gctcaagacc 1801 aaattggata cactcaccat cctgaacagc gagcacaacc atgaagttat cactaaggcg 1861 cgaaagtacg gctccctgaa gcgacagcgg gcggaagccg aggcggcagc ccgggcggag 1921 cgtcgtcagg acccattgga aacggccgcc acttcagcgc cggcaacaac gacatagcgc 1981 actagtctta agtccaagtg taaaatattg catcacctca acactcgtct gacttaataa 2041 aaatcaagtt agctaagttt ctcgctcttc atgcgtctct ttgacctcta gctttagatc 2101 tgcgtcgcac tcctccacca gtttgtacta accaagtgtg tatattttct attcacaggt 2161 tctgttgcgt actactcgta catcaccggt tttcgaggga gccgaaaact taagatcgga 2221 gagttctcct tcactcgaaa caagacctcg ggattgaaaa cttattggtc ttgcgctcga 2281 gcgggtgttc acaaatgcaa ggcccgtgta gtcaccgcgc aagaccacga tgtgactatc 2341 aaatgcggac aacataacca tccgccctac taaagaatca tattaaaacc ggccgacttt 2401 ggatcattgt atagaatcaa tttatagctt atttattgta gaatacaaat cttgaaaatc 2461 gaaaaaccgt attttgtaaa atttacactt taacagtttt tgcagtagta gactttacac 2521 ttaagctaac tcaaagctaa tttgtttctt acagtatgcg atgatctgga tgacatgaag 2581 ggcgccatca agcacagcct actcactttt attcggggac agcgcggctg caaactgctg 2641 gcctttaatg gccacaacta cgtgcgaaac cgtcgcagta acctgaagac ctactggata 2701 tgctccaaaa agggaagcac gaaatgcaat gctcgggtgg tcaccaatgt agttgaaggt 2761 gtgcacaaaa tagtactgga atcgtgccat cacacctgcc tgaacacgga gcgaaaaaag 2821 cggctttcag taacaaacgt tgtggggaaa gcgcgaagca agtcggaaaa gtctgtatcc 2881 acgggcttca taaaggagga gggtgacgag gatttaacac tggagctaag gacgctcaac 2941 ttaagcatcg aggaccttaa caacctgcaa tgaatcgaga ctcaaaatct agccatagct 3001 tgcgaactag aagtagacta tttatatgtg aatctaaaat aaactctttg tcttgtttat 3061 ttaagcagaa atgtcctata tgatttaaag aaactaactg tatgtgcatg tgtgtgaatg 3121 attgcgttgc ctttaactaa ttctgcctgt ttttctatgt tttagtgaca tttgatgtgt 3181 taacggatcc catcgtaaaa cccgatcaac accagctgat gaagcgcgtt cgtttgtcca 3241 aatccatgga gggcgtgcac tacgttcgca ctccggccgg gaatgtcgtt ctgcactgtg 3301 gggagcatcg ttacctgcgg aatgccgcct ataaggacaa ggtctactgg aagtgcagca 3361 agtggcgcaa gcaatgccgc tcccgcgtca tcactcacat cttgccgaat ggccaatccc 3421 gctacgcagt cagtggcgtg cataatcatc catagatcaa agagcattca gaagtctgaa 3481 tcgggacaca tacatagctg tatagattag gcagcttttt gtacagaatg atgtagtaaa 3541 cgaaattgaa ccgaaatcca tttctagttt tgcgcaataa caccttttaa tttgtcagat 3601 cttaagcttg atatataaac aggcttagga ttattttgca gaagatagta tttattaagg 3661 taaggtgagt gtgttgcaat tgacttgttt aaaactttac ttatgtttat gaatagacca 3721 acctc //