Dbfetch
LOCUS NM_001313323 1998 bp mRNA linear INV 22-NOV-2023
DEFINITION Caenorhabditis elegans Polypeptide
N-acetylgalactosaminyltransferase (gly-7), partial mRNA.
ACCESSION NM_001313323
VERSION NM_001313323.4
DBLINK BioProject: PRJNA158
KEYWORDS RefSeq.
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 1998)
AUTHORS Sulson,J.E. and Waterston,R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282 (5396), 2012-2018 (1998)
PUBMED 9851916
REMARK Erratum:[Science 1999 Jan 1;283(5398):35]
REFERENCE 2 (bases 1 to 1998)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1998)
AUTHORS WormBase.
CONSRTM WormBase Consortium
TITLE Direct Submission
JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics
Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org
REFERENCE 4 (bases 1 to 1998)
AUTHORS Sulson,J.E. and Waterston,R.
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger
Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute
at Washington University, St. Louis, MO 63110, USA
COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This
record is derived from an annotated genomic sequence (NC_003283).
On May 27, 2020 this sequence version replaced NM_001313323.3.
COMPLETENESS: incomplete on the 5' end.
FEATURES Location/Qualifiers
source 1..1998
/organism="Caenorhabditis elegans"
/mol_type="mRNA"
/strain="Bristol N2"
/db_xref="taxon:6239"
/chromosome="V"
gene <1..1998
/gene="gly-7"
/locus_tag="CELE_Y46H3A.6"
/db_xref="GeneID:178661"
/db_xref="WormBase:WBGene00001632"
CDS 1..1677
/gene="gly-7"
/locus_tag="CELE_Y46H3A.6"
/standard_name="Y46H3A.6b"
/note="Confirmed by transcript evidence"
/codon_start=1
/product="Polypeptide N-acetylgalactosaminyltransferase"
/protein_id="NP_001300252.1"
/db_xref="EnsemblGenomes-Gn:WBGene00001632"
/db_xref="EnsemblGenomes-Tr:Y46H3A.6b"
/db_xref="GeneID:178661"
/db_xref="GOA:A0A0K3ASG4"
/db_xref="InterPro:IPR000772"
/db_xref="InterPro:IPR001173"
/db_xref="InterPro:IPR029044"
/db_xref="InterPro:IPR035992"
/db_xref="UniProtKB/TrEMBL:A0A0K3ASG4"
/db_xref="WormBase:WBGene00001632"
/translation="MSSIKSDSAAQQFDDLDDLTNKELPGGPDPNTIFRGSELGNYEP
KEPEIPSNQPGEHGKPVPVTDEEGMAAGRAAEKEFGFNTYVSDMISMNRTIPDIRPEE
CKHWDYPEKLPTVSVVVVFHNEGWTPLLRTVHSVLLRSPPELIEQVVMVDDDSDKPHL
KEKLDKYVTRFNGKVIVVRTEQREGLINARSIGAKHSTGEVVLFLDAHCEVNTNWLPP
LLAPIKRNRKVMTVPVIDGIDSNSWEYRSVYGSPNAHHSGIFEWGLLYKETQITERET
AHRKHNSQPFRSPTHAGGLFAINRLWFKELGYYDEGLQIWGGEQYELSFKIWQCGGGI
VFVPCSHVGHVYRSHMPYSFGKFSGKPVISINMMRVVKTWMDDYSKYYLTREPQATNV
NPGDISAQLALRDKLQCKSFKWYMENVAYDVLKSYPMLPPNDVWGEARNPATGKCLDR
MGGIPGPMGATGCHGYGGNQLIRLNVQGQMAQGEWCLTANGIRIQANHCVKGTVNGFW
SYDRKTKQIIHSQKRQCITVSESGSEVTLQTCTEDNERQKFVWKEFYQSS"
ORIGIN
1 atgtcatcta tcaaatcgga cagtgccgct caacaatttg atgatttaga cgatctcaca
61 aataaggagc tccccggtgg tcctgatcct aatacaatct tccgtggctc agaactagga
121 aactacgagc caaaagagcc ggaaatccca tcaaatcagc ccggagagca cggaaaacct
181 gtgccagtaa ccgatgaaga aggaatggcg gcaggaagag cagcggagaa ggagttcggc
241 ttcaatacct acgtctccga tatgatctcg atgaatcgaa ctattccgga tatcaggccg
301 gaagagtgca agcattggga ttatccagaa aagctgccga ctgtttcagt ggttgttgtg
361 ttccacaatg agggatggac tccgttgctc cgaactgtgc attcggtgct gctcagatcc
421 ccgccagagt tgatcgagca ggttgtgatg gttgacgatg attctgacaa gcctcacctc
481 aaagagaaac tcgacaaata cgtgactcgc ttcaacggaa aagtcatcgt agttcgcaca
541 gaacaacgtg aaggcctcat caacgcgcga tccatcggag ccaaacactc gaccggtgaa
601 gtcgtgctct ttctggatgc tcattgtgaa gtcaacacca actggctccc accactgttg
661 gctccgatca agcgtaatcg caaggttatg actgttccag ttattgatgg aatcgactca
721 aactcgtggg aatatagaag tgtctatgga agcccgaatg ctcatcacag tggaattttc
781 gaatggggac ttttgtacaa ggagactcaa atcactgaaa gagaaactgc tcaccgcaag
841 cataacagtc agccgttccg ctcgccaact catgctggag gcctattcgc tatcaatcgg
901 ctctggttca aagaactcgg atattatgac gaagggcttc aaatctgggg tggagagcag
961 tatgagttga gcttcaagat ctggcagtgc ggcggtggaa ttgtgttcgt cccatgctca
1021 catgtcggtc atgtctacag aagtcacatg ccctacagct ttggaaagtt ctctggaaaa
1081 cctgtgattt ctattaacat gatgcgcgtc gtcaaaacct ggatggacga ctattcaaaa
1141 tactacctaa cacgtgaacc gcaggcgacc aatgtcaatc caggcgatat ctcggctcaa
1201 ttggctcttc gcgacaagct ccagtgcaaa tcgttcaaat ggtacatgga aaacgttgcc
1261 tatgacgtcc tgaagagcta tccgatgctc ccaccgaatg atgtttgggg agaggcccgg
1321 aatccggcaa ccggaaagtg tctcgataga atgggtggaa ttcctggacc aatgggagcg
1381 accggatgtc atggatatgg tggaaatcag cttatcagat tgaatgttca aggacagatg
1441 gctcaaggag aatggtgtct gactgcgaat ggaattcgaa ttcaggcgaa tcactgtgtc
1501 aaggggacgg tcaacggatt ttggtcttat gacaggaaaa ccaaacaaat catccacagc
1561 caaaagcgac agtgtataac agtatccgaa tcgggatcag aagttacgtt gcaaacgtgc
1621 acagaagaca acgaacgaca gaagtttgta tggaaagaat tttatcaatc cagctaactt
1681 cctctcatca tttcccagtc cctggaggat tatcattttt ttcctacaaa tattgtacat
1741 atccgggtat aaaatctaaa attagtttct tccaaagaca cttccttccc atctccccga
1801 aatccaaatc tctggagctt cttctagtat tatttaatta attaattaat ttttactctt
1861 tttattgtga tatttctcag ttacctaatt tataatttat tttcattgta atatgggttt
1921 tttattggtg gtggctttct cttttcactt tttgccttaa ttctgatgca tttaaaaaat
1981 aatattattg cttgtgta
//