Dbfetch

LOCUS       NM_001313323            1998 bp    mRNA    linear   INV 22-NOV-2023
DEFINITION  Caenorhabditis elegans Polypeptide
            N-acetylgalactosaminyltransferase (gly-7), partial mRNA.
ACCESSION   NM_001313323
VERSION     NM_001313323.4
DBLINK      BioProject: PRJNA158
KEYWORDS    RefSeq.
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 1998)
  AUTHORS   Sulson,J.E. and Waterston,R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282 (5396), 2012-2018 (1998)
   PUBMED   9851916
  REMARK    Erratum:[Science 1999 Jan 1;283(5398):35]
REFERENCE   2  (bases 1 to 1998)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1998)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (29-OCT-2023) WormBase Group, European Bioinformatics
            Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org
REFERENCE   4  (bases 1 to 1998)
  AUTHORS   Sulson,J.E. and Waterston,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger
            Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute
            at Washington University, St. Louis, MO 63110, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by WormBase. This
            record is derived from an annotated genomic sequence (NC_003283).
            
            On May 27, 2020 this sequence version replaced NM_001313323.3.
            COMPLETENESS: incomplete on the 5' end.
FEATURES             Location/Qualifiers
     source          1..1998
                     /organism="Caenorhabditis elegans"
                     /mol_type="mRNA"
                     /strain="Bristol N2"
                     /db_xref="taxon:6239"
                     /chromosome="V"
     gene            <1..1998
                     /gene="gly-7"
                     /locus_tag="CELE_Y46H3A.6"
                     /db_xref="GeneID:178661"
                     /db_xref="WormBase:WBGene00001632"
     CDS             1..1677
                     /gene="gly-7"
                     /locus_tag="CELE_Y46H3A.6"
                     /standard_name="Y46H3A.6b"
                     /note="Confirmed by transcript evidence"
                     /codon_start=1
                     /product="Polypeptide N-acetylgalactosaminyltransferase"
                     /protein_id="NP_001300252.1"
                     /db_xref="EnsemblGenomes-Gn:WBGene00001632"
                     /db_xref="EnsemblGenomes-Tr:Y46H3A.6b"
                     /db_xref="GeneID:178661"
                     /db_xref="GOA:A0A0K3ASG4"
                     /db_xref="InterPro:IPR000772"
                     /db_xref="InterPro:IPR001173"
                     /db_xref="InterPro:IPR029044"
                     /db_xref="InterPro:IPR035992"
                     /db_xref="UniProtKB/TrEMBL:A0A0K3ASG4"
                     /db_xref="WormBase:WBGene00001632"
                     /translation="MSSIKSDSAAQQFDDLDDLTNKELPGGPDPNTIFRGSELGNYEP
                     KEPEIPSNQPGEHGKPVPVTDEEGMAAGRAAEKEFGFNTYVSDMISMNRTIPDIRPEE
                     CKHWDYPEKLPTVSVVVVFHNEGWTPLLRTVHSVLLRSPPELIEQVVMVDDDSDKPHL
                     KEKLDKYVTRFNGKVIVVRTEQREGLINARSIGAKHSTGEVVLFLDAHCEVNTNWLPP
                     LLAPIKRNRKVMTVPVIDGIDSNSWEYRSVYGSPNAHHSGIFEWGLLYKETQITERET
                     AHRKHNSQPFRSPTHAGGLFAINRLWFKELGYYDEGLQIWGGEQYELSFKIWQCGGGI
                     VFVPCSHVGHVYRSHMPYSFGKFSGKPVISINMMRVVKTWMDDYSKYYLTREPQATNV
                     NPGDISAQLALRDKLQCKSFKWYMENVAYDVLKSYPMLPPNDVWGEARNPATGKCLDR
                     MGGIPGPMGATGCHGYGGNQLIRLNVQGQMAQGEWCLTANGIRIQANHCVKGTVNGFW
                     SYDRKTKQIIHSQKRQCITVSESGSEVTLQTCTEDNERQKFVWKEFYQSS"
ORIGIN      
        1 atgtcatcta tcaaatcgga cagtgccgct caacaatttg atgatttaga cgatctcaca
       61 aataaggagc tccccggtgg tcctgatcct aatacaatct tccgtggctc agaactagga
      121 aactacgagc caaaagagcc ggaaatccca tcaaatcagc ccggagagca cggaaaacct
      181 gtgccagtaa ccgatgaaga aggaatggcg gcaggaagag cagcggagaa ggagttcggc
      241 ttcaatacct acgtctccga tatgatctcg atgaatcgaa ctattccgga tatcaggccg
      301 gaagagtgca agcattggga ttatccagaa aagctgccga ctgtttcagt ggttgttgtg
      361 ttccacaatg agggatggac tccgttgctc cgaactgtgc attcggtgct gctcagatcc
      421 ccgccagagt tgatcgagca ggttgtgatg gttgacgatg attctgacaa gcctcacctc
      481 aaagagaaac tcgacaaata cgtgactcgc ttcaacggaa aagtcatcgt agttcgcaca
      541 gaacaacgtg aaggcctcat caacgcgcga tccatcggag ccaaacactc gaccggtgaa
      601 gtcgtgctct ttctggatgc tcattgtgaa gtcaacacca actggctccc accactgttg
      661 gctccgatca agcgtaatcg caaggttatg actgttccag ttattgatgg aatcgactca
      721 aactcgtggg aatatagaag tgtctatgga agcccgaatg ctcatcacag tggaattttc
      781 gaatggggac ttttgtacaa ggagactcaa atcactgaaa gagaaactgc tcaccgcaag
      841 cataacagtc agccgttccg ctcgccaact catgctggag gcctattcgc tatcaatcgg
      901 ctctggttca aagaactcgg atattatgac gaagggcttc aaatctgggg tggagagcag
      961 tatgagttga gcttcaagat ctggcagtgc ggcggtggaa ttgtgttcgt cccatgctca
     1021 catgtcggtc atgtctacag aagtcacatg ccctacagct ttggaaagtt ctctggaaaa
     1081 cctgtgattt ctattaacat gatgcgcgtc gtcaaaacct ggatggacga ctattcaaaa
     1141 tactacctaa cacgtgaacc gcaggcgacc aatgtcaatc caggcgatat ctcggctcaa
     1201 ttggctcttc gcgacaagct ccagtgcaaa tcgttcaaat ggtacatgga aaacgttgcc
     1261 tatgacgtcc tgaagagcta tccgatgctc ccaccgaatg atgtttgggg agaggcccgg
     1321 aatccggcaa ccggaaagtg tctcgataga atgggtggaa ttcctggacc aatgggagcg
     1381 accggatgtc atggatatgg tggaaatcag cttatcagat tgaatgttca aggacagatg
     1441 gctcaaggag aatggtgtct gactgcgaat ggaattcgaa ttcaggcgaa tcactgtgtc
     1501 aaggggacgg tcaacggatt ttggtcttat gacaggaaaa ccaaacaaat catccacagc
     1561 caaaagcgac agtgtataac agtatccgaa tcgggatcag aagttacgtt gcaaacgtgc
     1621 acagaagaca acgaacgaca gaagtttgta tggaaagaat tttatcaatc cagctaactt
     1681 cctctcatca tttcccagtc cctggaggat tatcattttt ttcctacaaa tattgtacat
     1741 atccgggtat aaaatctaaa attagtttct tccaaagaca cttccttccc atctccccga
     1801 aatccaaatc tctggagctt cttctagtat tatttaatta attaattaat ttttactctt
     1861 tttattgtga tatttctcag ttacctaatt tataatttat tttcattgta atatgggttt
     1921 tttattggtg gtggctttct cttttcactt tttgccttaa ttctgatgca tttaaaaaat
     1981 aatattattg cttgtgta
//