Dbfetch
LOCUS NM_001312999 2565 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans B box-type domain-containing protein (ncl-1), partial mRNA. ACCESSION NM_001312999 VERSION NM_001312999.3 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 2565) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 2565) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2565) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 2565) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003281). On Apr 15, 2020 this sequence version replaced NM_001312999.2. COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2565 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="III" gene <1..>2565 /gene="ncl-1" /locus_tag="CELE_ZK112.2" /db_xref="GeneID:176084" /db_xref="WormBase:WBGene00003559" CDS 1..2565 /gene="ncl-1" /locus_tag="CELE_ZK112.2" /standard_name="ZK112.2h" /note="Confirmed by transcript evidence" /codon_start=1 /product="B box-type domain-containing protein" /protein_id="NP_001299928.1" /db_xref="EnsemblGenomes-Gn:WBGene00003559" /db_xref="EnsemblGenomes-Tr:ZK112.2h" /db_xref="GeneID:176084" /db_xref="GOA:A0A0K3AS01" /db_xref="InterPro:IPR000315" /db_xref="InterPro:IPR001258" /db_xref="InterPro:IPR003649" /db_xref="InterPro:IPR011042" /db_xref="InterPro:IPR013017" /db_xref="UniProtKB/TrEMBL:A0A0K3AS01" /db_xref="WormBase:WBGene00003559" /translation="METQLSVQLGLDSLLTDFGLESVMNKQQQLFANMGLSDIGAPTP STAIPVPNAHLHPSMVAGSDPSNPVVGFGFGSPSSTTSSSPPLSNSPTIEQQQHAQLT AMMQGIMSNNNVAVSNGSGVQVASVPAVHCSGCKSNETKLQATSFCQDCNANLCDNCT MAHKFMHCFADHRVVSLTTPGTGSSSSSTSSSSSASSTSSHQVPSLGGKQSPDSMMLG SGKRSVLCLQHRASELVFFCVSCNLAICRDCTVSDHPSGTHQYELIADVADKQMLKME QLIADARSKHADMLDMFKQVDNKQQVLTASLHNAHAQLEETVSNLINVIQDQKKTLAK DIDNAFAAKQIQLTMVDKRIQSMADKLSQTIEFSRRLMSFASPAEVMVFKQLLDTRLQ LFLGFNPDTSGVLMTPCEIEYLGAAGLFNNSASTVSQLLGSVHGGSPINNAPAANDFL MPQAGLAPIGRAQSRIIPIEQNQLARSPPHHIAGSLPMNAYSDSNLLRPNKDFGGSSQ SLGPFNPLGASVPGAAADPFSSQYDKWSLGVEPSVGGLLEGGNVDEEKFQTLFPPSRS QIKRQKMIYHCKFGEFGVMEGQFTEPSGVAVNGQGDIVVADTNNHRIQVFDKEGRFKF QFGECGKRDGQLLYPNRVAVNRTTGDFVVTERSPTHQIQVYNQYGQFLRKFGANILQH PRGVCVDSKGRIIVVECKVMRVIIFDMFGNILQKFSCSRYLEFPNGVCTNDKNEILIS DNRAHCIKVFSYEGQYLRQIGGEGVTNYPIGVGINSLGEVVVADNHNNFNLTVFSQDG TMIGALESRVKHAQCFDVALVDDGSVVLASKDYRLYLYRFLPATSGQSTSSASSQI" ORIGIN 1 atggagactc agttaagcgt acaactcggt ttagactcgt tgctcactga cttcgggctc 61 gagtcagtaa tgaacaagca acaacagttg ttcgccaata tgggactctc cgacattgga 121 gctccaacac catcaacagc cattcctgtt ccaaatgccc atcttcatcc atcgatggtt 181 gcaggatcgg atccttcaaa tcctgttgtt gggttcggat ttggatcacc atcatcaacc 241 acatcctcat ctccaccatt gagtaattcg ccgacgattg agcaacaaca gcatgctcaa 301 ctcaccgcca tgatgcaagg aattatgagc aacaacaatg tagcagtcag caatggatct 361 ggagtgcagg tcgcctcggt tccagcagtt cactgcagtg ggtgcaagtc caatgagacg 421 aaattacagg caacttcgtt ctgtcaagac tgcaacgcga atctctgtga caactgcaca 481 atggcccata aattcatgca ctgcttcgca gatcatcgtg ttgtcagtct cactacacct 541 ggaactggct cttcatcatc gtcaacatcg agttcgtcat cagcatcttc aacttcatca 601 catcaagtgc catcacttgg gggaaaacaa tcaccagata gtatgatgct tggatccgga 661 aagcgatcag tactgtgcct ccagcatcgt gcttcagaac tcgtcttctt ctgtgtgtcg 721 tgcaatttgg caatctgccg tgattgtact gtttctgatc atccatcggg aacccatcag 781 tatgaactta ttgctgacgt cgccgacaaa caaatgctca aaatggagca attgattgca 841 gatgcgcgga gtaagcatgc cgatatgctc gatatgttca agcaggttga caataagcaa 901 caagttctga cagcctcgtt gcacaatgca catgctcaac tggaagagac cgtttcgaat 961 ttgatcaatg ttattcaaga tcagaagaag actttggcaa aggatattga taacgctttt 1021 gcagccaagc agatccaact caccatggtc gacaagcgga ttcaatcgat ggccgacaaa 1081 ctatctcaga caattgaatt ctctcgtaga ttgatgtcct tcgcgtcgcc agcggaggtt 1141 atggtattca aacagcttct tgatacccgt ctccaattgt tcctcggatt caaccctgat 1201 accagtggag ttctgatgac cccatgtgag atcgaatatc ttggagctgc tggacttttc 1261 aataactcgg catctacagt ctcacaactt cttggatcag ttcacggagg aagtccaatc 1321 aacaatgccc cagcagcaaa tgactttttg atgccccaag ccggacttgc accaatcgga 1381 cgagcacaaa gccgtatcat cccaatcgaa caaaaccaac ttgctcgttc tccgccacat 1441 cacattgctg gttctcttcc aatgaatgca tattctgatt ctaatcttct tcgtccaaat 1501 aaggactttg gtggatcctc gcaatcattg ggaccattca atccacttgg agcgtctgtt 1561 ccaggtgctg ctgctgatcc attctcatct cagtatgata aatggagcct tggagttgaa 1621 ccatcagttg gaggtcttct cgaaggtgga aacgttgacg aggagaaatt ccaaactttg 1681 ttcccaccat caagatctca gattaagcgt cagaagatga tctatcattg caagttcgga 1741 gagtttggag tcatggaagg acaattcact gagccatctg gagttgctgt caatggacag 1801 ggcgacatcg tcgttgctga caccaataat caccgtatcc aggtgttcga caaggaaggt 1861 cgttttaagt tccaatttgg agaatgtggc aaacgcgatg gacaattgtt gtatccaaat 1921 cgtgtggctg tcaaccgtac caccggcgac tttgttgtca ctgagagatc gccaactcat 1981 cagattcaag tgtacaacca gtatgggcaa ttcttgcgta aattcggcgc caatatcctc 2041 caacatccac gtggagtgtg tgttgatagc aagggacgca tcattgttgt tgagtgcaag 2101 gtcatgcgtg taatcatttt cgatatgttc ggcaacatct tgcaaaagtt ctcatgctct 2161 cgctatctcg agttccccaa cggcgtgtgc accaacgaca agaacgagat tctgatatct 2221 gataaccgtg ctcattgcat caaggtgttc tcctacgaag gacaatatct tcgccaaatc 2281 ggaggcgagg gagtcaccaa ttacccaatt ggggttggaa tcaactctct tggagaagta 2341 gttgtcgctg ataaccacaa caacttcaac ttgactgtct tctctcagga tggaaccatg 2401 attggagctc ttgagtcacg tgtcaagcac gctcagtgct tcgatgttgc tcttgttgat 2461 gatggatcag ttgtacttgc atcgaaagac taccgtcttt acctctaccg cttccttccg 2521 gccacatctg gacagtcaac ttcttccgct tctagccaga tctag //