Dbfetch
LOCUS NM_001307917 3788 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Patronin (microtubule-binding protein) homolog (ptrn-1), partial mRNA. ACCESSION NM_001307917 VERSION NM_001307917.4 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 3788) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 3788) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3788) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 3788) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003284). On Apr 15, 2020 this sequence version replaced NM_001307917.3. COMPLETENESS: incomplete on the 5' end. FEATURES Location/Qualifiers source 1..3788 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="X" gene <1..3788 /gene="ptrn-1" /locus_tag="CELE_F35B3.5" /db_xref="GeneID:181743" /db_xref="WormBase:WBGene00004121" CDS 1..3339 /gene="ptrn-1" /locus_tag="CELE_F35B3.5" /standard_name="F35B3.5c" /note="Partially confirmed by transcript evidence" /codon_start=1 /product="Patronin (microtubule-binding protein) homolog" /protein_id="NP_001294846.1" /db_xref="EnsemblGenomes-Gn:WBGene00004121" /db_xref="EnsemblGenomes-Tr:F35B3.5c" /db_xref="GeneID:181743" /db_xref="GOA:U4PAZ9" /db_xref="InterPro:IPR001715" /db_xref="InterPro:IPR011033" /db_xref="InterPro:IPR014797" /db_xref="InterPro:IPR022613" /db_xref="InterPro:IPR032940" /db_xref="InterPro:IPR036872" /db_xref="InterPro:IPR038209" /db_xref="UniProtKB/Swiss-Prot:U4PAZ9" /db_xref="WormBase:WBGene00004121" /translation="MDFPLPALLAIEDYDENEGKLAASIRWLISRVYEEKRDMPDKLR DGVQRDENGHFQIDEAVVGALCNGSLYAQAAAKIFKESALVTKGHGAVLAVLTDYGID VLHDGNELVEEAQLVASAPFNMSAHLAIIDALMMAHLRDVIPVSRVVEAVSRHTAVEP SEKPIDSVDALLFWINKICLLVRDDVEREDSNTNIPEMEDLYEDISDGQCLCALLHWY RPHEMPVADISFNDSATTRDCQYNLMLLQLFCRHHLAVDPFHFEIEDLLYLRDSLQMN VNAFLADLFVQFEPPVTPEPVETPRIGPSPRRFVPASAIPDLRAANAAARSSMHNRNR PRMYNPPPAVSHSQGPSRSVSRMSQDSLFYSRPASIALQRRSMDQDSVTDFQTIRQGF ENQAGTAQLNRYDGSVTASVRLAMEEKRRKHDQQMAQMSFSSANETERLEKSKAAFFA LRKNDNDQTSKGKEEWYDHFEAKLRALELRVGLEEGEDGTQSARLNRASSQPSVVQAG QTYPANYMTLPMNAAAQMTQSYIQHPQTPHDYYMQQQMQQQQQQQAQAQSNYASPSQL RNSLSNGMINHAGYIVQSMYPGDYQQQQQQMQMQQGQMPVQPVGAYTPEGYFIPHHMQ PIPVQQGYQQMPQPGMGFNGMPATSQPGFNMEGSPAQMGYIQTANKPLDMEMPMQQQP PQQPPQQMLPPNQNAFHLHSKSDDATQVQADPPLEINRNLTNWGMTYKQEMPARSIPS RRTWQNETFIKNELDLVNSKESVPHITDETTTQPEEAARRFPDLMLDNHSENLAPGRG FSRQNDRDDLSTGRKSDDSPTDTPGRTFDDDEGSGENMEKIANERRIAKKAALIAKTM KRKEEIETKVDLAEQRNAERRQVENEKKELALRKKVEKEQQRQKILDEYKRKKLEKEL GAELSARSTGRGHSQPPFIRTKSQMSEVTESSRQNTPRMRGQSSVEQRVSVSSLAEPT HKLYAKTVTKSNRGLINNALQFSVFPGAVNNATRQATITQMASSSSKHFLILFRDQKC QYRGLYTWDEISDTAVKISGQGPPKCTEAMMNSMFKYDSGAKNFTNIATKHLSATIDG FAILDQYWQKARIPHSGTPAHKNN" ORIGIN 1 atggacttcc ctttgccggc tctgcttgca atagaggatt atgatgaaaa tgagggtaaa 61 ctagctgcat cgattcgatg gttaatttca cgggtttacg aagaaaaacg agatatgccg 121 gataaattaa gggacggagt gcagagggat gaaaatggac actttcaaat tgacgaagcc 181 gtcgtcggag ccctgtgcaa tggttcgttg tacgcacaag ctgctgctaa gatattcaag 241 gagtcagcgc tagttactaa aggccatgga gcagttctcg cggtgctgac cgattatgga 301 atcgatgtat tgcacgacgg aaatgaattg gtggaggagg cgcagctggt tgcttcggct 361 ccttttaata tgtctgcaca ccttgcaata attgatgctc ttatgatggc acaccttcga 421 gatgttatcc cagtcagtcg ggtggttgaa gcagtaagcc gtcacacagc tgtggagccc 481 agcgaaaagc ccatcgacag tgtggatgct ctacttttct ggataaataa aatatgtctt 541 ctagttagag acgatgtaga acgggaggat tcgaacacga atattccgga aatggaggat 601 ttgtacgagg atatttcaga tgggcagtgt ttgtgtgctc tattgcattg gtacagaccg 661 catgaaatgc ctgtagctga tatttcgttc aacgattcag cgaccacaag agactgccaa 721 tataacttaa tgttgttaca actattctgc cgacaccacc tcgcagttga cccattccac 781 ttcgagatcg aagatctgct gtacctgcgt gactcactac aaatgaatgt gaacgccttc 841 cttgctgacc tattcgttca attcgaaccg ccagttacac cagaaccagt tgaaacacca 901 cgcatcggac cttctcctcg acgcttcgtg ccggcatctg caattcctga ccttagagct 961 gcaaatgcgg cggcgagaag ttcaatgcac aataggaatc gaccaagaat gtataatcca 1021 cctccagctg tttcacattc tcaaggcccg tcgagatcag tgagcagaat gagccaggac 1081 agtttatttt attctcgtcc agcatcgatt gcactacaga ggaggagcat ggatcaagat 1141 tctgtgaccg attttcaaac cattcggcag ggttttgaaa accaagctgg aacggctcaa 1201 ctaaatcgat atgatggcag tgtgactgca tctgttcggc tggccatgga ggaaaaacgg 1261 agaaagcatg atcaacagat ggctcagatg agttttagct ctgcgaacga gacggagcga 1321 ctcgaaaaaa gcaaggccgc attttttgca ctccgaaaaa acgacaacga ccaaacgagc 1381 aaaggaaaag aggagtggta cgaccatttt gaagcaaaac tacgagcgtt ggagctgaga 1441 gtgggattag aagaaggaga ggatggaact caatcggcca gattgaacag agcctcttcc 1501 cagcctagtg tggtacaagc cggtcaaaca tacccagcca actacatgac attgccgatg 1561 aacgcagctg cacaaatgac acagtcttat attcaacatc cacaaacccc acacgactac 1621 tacatgcagc agcaaatgca gcaacagcag cagcaacagg ctcaagctca gagcaactat 1681 gcgagtcctt ctcagctccg aaacagcttg agcaacggaa tgatcaacca cgcgggctat 1741 atagttcaat caatgtaccc cggtgattat caacaacagc aacaacaaat gcaaatgcag 1801 cagggacaaa tgccagtgca gccagttggt gcatacactc cggaaggata tttcattcca 1861 catcacatgc agccgattcc agtacaacag ggttatcaac agatgcctca acccggaatg 1921 ggttttaatg gaatgcctgc caccagtcaa cccggcttca atatggaggg ctctcccgcg 1981 cagatgggct acattcaaac agccaataag ccgttagata tggaaatgcc gatgcaacag 2041 cagccaccac aacagccacc acaacaaatg cttcctccca atcaaaacgc cttccatctt 2101 cattcaaaga gtgatgatgc gactcaagtg caagctgacc caccattgga aatcaataga 2161 aatctgacaa actggggaat gacttacaaa caagaaatgc cagcaaggtc gataccatcg 2221 aggaggacgt ggcaaaatga aacgtttata aagaatgagt tggacttagt gaatagcaaa 2281 gagtcggtgc cacatatcac agatgagaca acaacacaac ctgaagaggc tgcaagacgc 2341 ttcccagatt tgatgcttga caatcattcg gaaaatcttg ctccaggccg aggcttcagc 2401 cgtcaaaatg accgtgatga tctttctact ggtagaaaat cagacgacag tcctactgac 2461 acgcctggtc gcacttttga tgacgatgag ggctctggtg aaaacatgga gaaaatcgca 2521 aatgaacgtc gtattgctaa aaaagcagct ctcatcgcaa aaactatgaa aagaaaagaa 2581 gaaatcgaga caaaagttga cctggcagaa caaagaaacg cagagaggcg acaagttgag 2641 aatgagaaga aggagttggc attgagaaag aaggttgaaa aagaacaaca acgacaaaaa 2701 attcttgatg aatacaagag gaaaaagctg gagaaggagc tcggtgctga gctctcagct 2761 aggtcaaccg gaagaggaca ttctcaacca ccgttcatca ggacaaagtc tcaaatgagt 2821 gaagtaacag agtcttcaag gcagaatact cctagaatga gaggccagtc atctgttgag 2881 caaagggtat cggtgagcag tttggcggaa ccaacacaca agttatacgc caaaacagtg 2941 accaaatcca accgtggatt aatcaataac gctcttcaat tcagtgtgtt ccctggagca 3001 gttaataatg caacaaggca ggcgacaata acacaaatgg cgtcatctag ctcgaagcat 3061 tttctgattc ttttccgaga ccaaaagtgt cagtacagag gactgtacac ttgggacgag 3121 atttccgaca cagccgttaa aatttcggga caaggaccgc caaaatgcac tgaggcaatg 3181 atgaattcaa tgtttaaata cgattccgga gcgaaaaact tcacgaacat tgccacaaag 3241 cacttgtctg ccacaattga cggatttgca attttggatc aatactggca aaaagctcga 3301 attccacact cgggaactcc ggctcataag aataactaaa gagatacaca tgtttttggt 3361 gctttgtaga aaccagtaca cgcgcatttt cacttacttt ttttattttt ttccgtttct 3421 ttctgtttct aattttgcag attacgagct tgctaaaatc aattaaaatt gtagttatta 3481 atttaattgc acttgtaaaa tgaaactatt aaataatttt caaatttcaa aatgaaaata 3541 aaatcaaaat ttgtgaaaaa aaagaataaa aacccccttt atttattttc tgtgatcctt 3601 gtgtttcagt tgtttcatag tcagttgtca aaaagtttga accttgtctg atggaatctt 3661 tttgtgaaac ttttcttgtt catcccatgc cttccttaaa gtgtaattgt cattttgtgc 3721 cccatttcca atcaaatctt ctccactgtt cggccagatt tacttacgaa taaattaatt 3781 cgaattta //