Dbfetch
LOCUS NM_001300520 3612 bp mRNA linear INV 26-DEC-2023
DEFINITION Drosophila melanogaster pre-mod(mdg4)-B, transcript variant A
(pre-mod(mdg4)-B), partial mRNA.
ACCESSION NM_001300520
VERSION NM_001300520.2
DBLINK BioProject: PRJNA164
BioSample: SAMN02803731
KEYWORDS RefSeq.
SOURCE Drosophila melanogaster (fruit fly)
ORGANISM Drosophila melanogaster
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE 1 (bases 1 to 3612)
AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St
Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K.,
Strelets,V., Russo,S.M. and Gelbart,W.M.
CONSRTM FlyBase Consortium
TITLE Gene Model Annotations for Drosophila melanogaster: Impact of
High-Throughput Data
JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015)
PUBMED 26109357
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3612)
AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St
Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B.,
Russo,S.M. and Gelbart,W.M.
CONSRTM FlyBase Consortium
TITLE Gene Model Annotations for Drosophila melanogaster: The
Rule-Benders
JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015)
PUBMED 26109356
REMARK Publication Status: Online-Only
REFERENCE 3 (bases 1 to 3612)
AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I.,
Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R.,
Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G.,
Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N.,
Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A.,
Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E.
TITLE The Release 6 reference sequence of the Drosophila melanogaster
genome
JOURNAL Genome Res 25 (3), 445-458 (2015)
PUBMED 25589440
REFERENCE 4 (bases 1 to 3612)
AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M.,
Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F.,
Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E.
TITLE Sequence finishing and mapping of Drosophila melanogaster
heterochromatin
JOURNAL Science 316 (5831), 1625-1628 (2007)
PUBMED 17569867
REFERENCE 5 (bases 1 to 3612)
AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
TITLE The Release 5.1 annotation of Drosophila melanogaster
heterochromatin
JOURNAL Science 316 (5831), 1586-1591 (2007)
PUBMED 17569856
REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325]
REFERENCE 6 (bases 1 to 3612)
AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D.,
Ashburner,M. and Anxolabehere,D.
TITLE Combined evidence annotation of transposable elements in genome
sequences
JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005)
PUBMED 16110336
REFERENCE 7 (bases 1 to 3612)
AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A.,
Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A.,
Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W.,
Celniker,S.E., Rubin,G.M. and Karpen,G.H.
TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly
JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002)
PUBMED 12537574
REFERENCE 8 (bases 1 to 3612)
AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J.,
Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E.,
Rubin,G.M., Ashburner,M. and Celniker,S.E.
TITLE The transposable elements of the Drosophila melanogaster
euchromatin: a genomics perspective
JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002)
PUBMED 12537573
REFERENCE 9 (bases 1 to 3612)
AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S.,
Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E.,
Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L.,
Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D.,
Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J.,
Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M.,
Rubin,G.M. and Lewis,S.E.
TITLE Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review
JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002)
PUBMED 12537572
REFERENCE 10 (bases 1 to 3612)
AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W.,
Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E.,
Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M.,
Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S.,
Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M.,
Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W.,
Gibbs,R.A. and Rubin,G.M.
TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence
JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002)
PUBMED 12537568
REFERENCE 11 (bases 1 to 3612)
AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D.,
Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F.,
George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N.,
Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X.,
Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D.,
Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L.,
Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D.,
Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M.,
Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S.,
Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P.,
Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A.,
Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B.,
Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I.,
Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S.,
Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C.,
Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S.,
Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z.,
Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J.,
Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J.,
Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z.,
Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C.,
Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A.,
Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C.,
McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C.,
Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L.,
Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K.,
Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S.,
Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K.,
Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I.,
Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C.,
Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R.,
Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A.,
Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT,
Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F.,
Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H.,
Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O.,
Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C.
TITLE The genome sequence of Drosophila melanogaster
JOURNAL Science 287 (5461), 2185-2195 (2000)
PUBMED 10731132
REFERENCE 12 (bases 1 to 3612)
AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R.,
Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R.,
Smith,E., Yu,C. and Rubin,G.
CONSRTM Berkeley Drosophila Genome Project
TITLE Drosophila melanogaster release 4 sequence
JOURNAL Unpublished
REFERENCE 13 (bases 1 to 3612)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 14 (bases 1 to 3612)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 15 (bases 1 to 3612)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 16 (bases 1 to 3612)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 17 (bases 1 to 3612)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 18 (bases 1 to 3612)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 19 (bases 1 to 3612)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 20 (bases 1 to 3612)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 21 (bases 1 to 3612)
AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R.,
Park,S., Svirskas,R. and Karpen,G.
TITLE Direct Submission
JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne
Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
REMARK Direct Submission
REFERENCE 22 (bases 1 to 3612)
AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S.,
Svirskas,R. and Rubin,G.
TITLE Direct Submission
JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
Lawrence Berkeley National Laboratory, One Cyclotron Road, MS
64-121, Berkeley, CA 94720, USA
REMARK Direct Submission
REFERENCE 23 (bases 1 to 3612)
AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
CONSRTM Drosophila Heterochromatin Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project,
Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron
Road, Mailstop 64-121, Berkeley, CA 94720, USA
REFERENCE 24 (bases 1 to 3612)
AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J.
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive,
Rockville, MD 20850, USA
COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This
record is derived from an annotated genomic sequence (NT_033777).
On Oct 19, 2015 this sequence version replaced NM_001300520.1.
##Genome-Annotation-Data-START##
Annotation Provider :: FlyBase
Annotation Status :: Full annotation
Annotation Version :: Release 6.54
URL :: http://flybase.org
##Genome-Annotation-Data-END##
COMPLETENESS: incomplete on the 5' end.
FEATURES Location/Qualifiers
source 1..3612
/organism="Drosophila melanogaster"
/mol_type="mRNA"
/db_xref="taxon:7227"
/chromosome="3R"
/genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2]
bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]"
gene <1..3612
/gene="pre-mod(mdg4)-B"
/locus_tag="Dmel_CG44884"
/gene_synonym="CG44884; Dmel\CG44884"
/exception="dicistronic gene"
/note="trans-splicing precursor of mod(mdg4)-B"
/map="93D8-93D8"
/db_xref="FLYBASE:FBgn0266178"
/db_xref="GeneID:19835051"
CDS <2729..3016
/gene="pre-mod(mdg4)-B"
/locus_tag="Dmel_CG44884"
/gene_synonym="CG44884; Dmel\CG44884"
/exception="rearrangement required for product"
/note="CG44884 gene product from transcript CG44884-RA;
trans-splicing precursor of mod(mdg4)-B; CG44884-PA;
pre-mod(mdg4)-B-PA"
/codon_start=1
/product="pre-mod(mdg4)-B, isoform A"
/protein_id="NP_001287449.2"
/db_xref="FLYBASE:FBpp0310318"
/db_xref="GeneID:19835051"
/db_xref="FLYBASE:FBgn0266178"
/translation="TFDVLTDPIVKPDQHQLMKRVRLSKSMEGVHYVRTPAGNVVLHC
GEHRYLRNAAYKDKVYWKCSKWRKQCRSRVITHILPNGQSRYAVSGVHNHP"
ORIGIN
1 cgccattttt gttgtagttg ttattttttc gccgtgttgt gttcgctgag tttttgtttt
61 ttgtcaaaca aattgcaagt ctatagttaa caaaaggtgt tgtggcttaa atgtggctaa
121 ctgcagcatg catattaatg tccgaagttt acaatatgtg aattatcctg cgaaaatgca
181 gcgagtaagt gcgtgtggcc ctgcgcgtat gtatgtgcgt ctgtgtgtgt gcaccgattg
241 tcatctttgt tgttgttggt gtctcaaaaa ggaatccctc caaaaaagta ccaaaaagga
301 tgatgttcta tttgaattta atgtgaacta gtgtttttag tgatatttag tgatttttct
361 gctctggtag ttgttgaatt aatgtggaaa gtgctttatg ccccaggtca gttcatcggg
421 gatattccgc gtggccagtg gattgataag catgagtact tcttcctgaa aaaccagaag
481 cagggtttta acctggtatt caatggatac atgtacaaga aggaggccag tttccgggcc
541 acggtcaatt ggatctgttc cgacggaaat ggcaagcgtt tgaacgagaa caagtgctcc
601 gcgagggcca tcaccaagtt cgacggaggg atcaagctgg ggaagaatgc ccacaatcat
661 ccgccgcgct ttttgggtgg caaggtgccc gctaaactaa tgcccaagga tgctttttat
721 ccgcaatatt aaatgagatt acataaaccc gaaagaatgt catttgtcca aaagattata
781 cccagttgca tgcattacct accataagct cattaaactc atgtggcagc agtcatttca
841 tcatcatacc atcttcatct tcgtcttcat cctcttcagc aaaagaccag aacaagggcg
901 tcctcttgaa gcgcaccgct cagggcgagt tcctggtggt caacgggaag tcttacaaaa
961 aaacccgcgc catgcagtac cgcacctact tccattgctt gaccaggaac tgcccgacct
1021 actacgtcct cgtggagctg agccgacgac ctcgactcac caggcatcat gagcacgccc
1081 agcactgtct gcagtgctat taggatgtag gatgtgtatg tagtcatagg ccgaatccgc
1141 aatgtacaat ataccgaata ccattttacc attaaagcaa tcccaagtgt tttatttcct
1201 tttctgaact aataattccc cctaatccaa tcatcacgca caactaacga ggaaaactct
1261 tcttattgta gccaaattcg actaccagat cagcgtggat gtgggcgagg ccactatgca
1321 gctggccaac gcctcgtccg ccggagtggt caacagcaac tctcccttct tcatcgtcag
1381 caagtacggc accaagcaga tcatgctcaa gcaacacacc ttcaatcgtc acatctgccg
1441 ggacgacgtc acctattggc gctgcagcca gttcgcagtg ttgcgatgtc gtgcgcggct
1501 caagaccaaa ttggatacac tcaccatcct gaacagcgag cacaaccatg aagttatcac
1561 taaggcgcga aagtacggct ccctgaagcg acagcgggcg gaagccgagg cggcagcccg
1621 ggcggagcgt cgtcaggacc cattggaaac ggccgccact tcagcgccgg caacaacgac
1681 atagcgcact agtcttaagt ccaagtgtaa aatattgcat cacctcaaca ctcgtctgac
1741 ttaataaaaa tcaagttagc taagtttctc gctcttcatg cgtctctttg acctctagct
1801 ttagatctgc gtcgcactcc tccaccagtt tgtactaacc aagtgtgtat attttctatt
1861 cacaggttct gttgcgtact actcgtacat caccggtttt cgagggagcc gaaaacttaa
1921 gatcggagag ttctccttca ctcgaaacaa gacctcggga ttgaaaactt attggtcttg
1981 cgctcgagcg ggtgttcaca aatgcaaggc ccgtgtagtc accgcgcaag accacgatgt
2041 gactatcaaa tgcggacaac ataaccatcc gccctactaa agaatcatat taaaaccggc
2101 cgactttgga tcatttatgc gatgatctgg atgacatgaa gggcgccatc aagcacagcc
2161 tactcacttt tattcgggga cagcgcggct gcaaactgct ggcctttaat ggccacaact
2221 acgtgcgaaa ccgtcgcagt aacctgaaga cctactggat atgctccaaa aagggaagca
2281 cgaaatgcaa tgctcgggtg gtcaccaatg tagttgaagg tgtgcacaaa atagtactgg
2341 aatcgtgcca tcacacctgc ctgaacacgg agcgaaaaaa gcggctttca gtaacaaacg
2401 ttgtggggaa agcgcgaagc aagtcggaaa agtctgtatc cacgggcttc ataaaggagg
2461 agggtgacga ggatttaaca ctggagctaa ggacgctcaa cttaagcatc gaggacctta
2521 acaacctgca atgaatcgag actcaaaatc tagccatagc ttgcgaacta gaagtagact
2581 atttatatgt gaatctaaaa taaactcttt gtcttgttta tttaagcaga aatgtcctat
2641 atgatttaaa gaaactaact gtatgtgcat gtgtgtgaat gattgcgttg cctttaacta
2701 attctgcctg tttttctatg ttttagtgac atttgatgtg ttaacggatc ccatcgtaaa
2761 acccgatcaa caccagctga tgaagcgcgt tcgtttgtcc aaatccatgg agggcgtgca
2821 ctacgttcgc actccggccg ggaatgtcgt tctgcactgt ggggagcatc gttacctgcg
2881 gaatgccgcc tataaggaca aggtctactg gaagtgcagc aagtggcgca agcaatgccg
2941 ctcccgcgtc atcactcaca tcttgccgaa tggccaatcc cgctacgcag tcagtggcgt
3001 gcataatcat ccatagatca aagagcattc agaagtctga atcgggacac atacatagct
3061 gtatagatta ggcagctttt tgtacagaat gatgtagtaa acgaaattga accgaaatcc
3121 atttctagtt ttgcgcaata acacctttta atttgtcaga tcttaagctt gatatataaa
3181 caggcttagg attattttgc agaagatagt atttattaag atttaggtga actcaatcct
3241 agcaacctgg ctgactttgg taacgagagc ttcttgccca aaaccaaggg taaacggcca
3301 cagaatgttc gctgtggact ggcgcccgat cagaagtgcg tccgcaccct ggacgactgg
3361 gatcgcatcc ggtatgatcg gaccaggagc ggcgatgttc tggtctacga cggatatcgt
3421 tatgatcgac gagccaacta caacgatatc atatattggg ggtgtgccaa aaagcgacta
3481 agctgcaacg tctacatgat tacccacaaa aacaaaccca catatgtagc catttcaggc
3541 gtgcacaacc atttgtagac gtgtatacat tgctgtatta ccaataaact tacaattctt
3601 cgtttaaaac ct
//