Dbfetch
LOCUS NM_001300515 3432 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster pre-mod(mdg4)-P, transcript variant A (pre-mod(mdg4)-P), partial mRNA. ACCESSION NM_001300515 VERSION NM_001300515.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3432) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3432) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3432) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3432) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3432) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3432) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3432) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3432) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3432) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3432) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3432) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3432) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3432) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3432) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3432) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3432) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3432) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3432) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3432) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3432) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3432) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3432) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3432) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3432) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on the 5' end. FEATURES Location/Qualifiers source 1..3432 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene <1..3432 /gene="pre-mod(mdg4)-P" /locus_tag="Dmel_CG44881" /gene_synonym="CG44881; Dmel\CG44881" /exception="dicistronic gene" /note="trans-splicing precursor of mod(mdg4)-P" /map="93D8-93D8" /db_xref="FLYBASE:FBgn0266175" /db_xref="GeneID:19835348" CDS <1274..1684 /gene="pre-mod(mdg4)-P" /locus_tag="Dmel_CG44881" /gene_synonym="CG44881; Dmel\CG44881" /exception="rearrangement required for product" /note="CG44881 gene product from transcript CG44881-RA; trans-splicing precursor of mod(mdg4)-P; CG44881-PA; pre-mod(mdg4)-P-PA" /codon_start=1 /product="pre-mod(mdg4)-P, isoform A" /protein_id="NP_001287444.2" /db_xref="FLYBASE:FBpp0310316" /db_xref="GeneID:19835348" /db_xref="FLYBASE:FBgn0266175" /translation="KFDYQISVDVGEATMQLANASSAGVVNSNSPFFIVSKYGTKQIM LKQHTFNRHICRDDVTYWRCSQFAVLRCRARLKTKLDTLTILNSEHNHEVITKARKYG SLKRQRAEAEAAARAERRQDPLETAATSAPATTT" ORIGIN 1 cgccattttt gttgtagttg ttattttttc gccgtgttgt gttcgctgag tttttgtttt 61 ttgtcaaaca aattgcaagt ctatagttaa caaaaggtgt tgtggcttaa atgtggctaa 121 ctgcagcatg catattaatg tccgaagttt acaatatgtg aattatcctg cgaaaatgca 181 gcgagtaagt gcgtgtggcc ctgcgcgtat gtatgtgcgt ctgtgtgtgt gcaccgattg 241 tcatctttgt tgttgttggt gtctcaaaaa ggaatccctc caaaaaagta ccaaaaagga 301 tgatgttcta tttgaattta atgtgaacta gtgtttttag tgatatttag tgatttttct 361 gctctggtag ttgttgaatt aatgtggaaa gtgctttatg ccccaggtca gttcatcggg 421 gatattccgc gtggccagtg gattgataag catgagtact tcttcctgaa aaaccagaag 481 cagggtttta acctggtatt caatggatac atgtacaaga aggaggccag tttccgggcc 541 acggtcaatt ggatctgttc cgacggaaat ggcaagcgtt tgaacgagaa caagtgctcc 601 gcgagggcca tcaccaagtt cgacggaggg atcaagctgg ggaagaatgc ccacaatcat 661 ccgccgcgct ttttgggtgg caaggtgccc gctaaactaa tgcccaagga tgctttttat 721 ccgcaatatt aaatgagatt acataaaccc gaaagaatgt catttgtcca aaagattata 781 cccagttgca tgcattacct accataagct cattaaactc atgtggcagc agtcatttca 841 tcatcatacc atcttcatct tcgtcttcat cctcttcagc aaaagaccag aacaagggcg 901 tcctcttgaa gcgcaccgct cagggcgagt tcctggtggt caacgggaag tcttacaaaa 961 aaacccgcgc catgcagtac cgcacctact tccattgctt gaccaggaac tgcccgacct 1021 actacgtcct cgtggagctg agccgacgac ctcgactcac caggcatcat gagcacgccc 1081 agcactgtct gcagtgctat taggatgtag gatgtgtatg tagtcatagg ccgaatccgc 1141 aatgtacaat ataccgaata ccattttacc attaaagcaa tcccaagtgt tttatttcct 1201 tttctgaact aataattccc cctaatccaa tcatcacgca caactaacga ggaaaactct 1261 tcttattgta gccaaattcg actaccagat cagcgtggat gtgggcgagg ccactatgca 1321 gctggccaac gcctcgtccg ccggagtggt caacagcaac tctcccttct tcatcgtcag 1381 caagtacggc accaagcaga tcatgctcaa gcaacacacc ttcaatcgtc acatctgccg 1441 ggacgacgtc acctattggc gctgcagcca gttcgcagtg ttgcgatgtc gtgcgcggct 1501 caagaccaaa ttggatacac tcaccatcct gaacagcgag cacaaccatg aagttatcac 1561 taaggcgcga aagtacggct ccctgaagcg acagcgggcg gaagccgagg cggcagcccg 1621 ggcggagcgt cgtcaggacc cattggaaac ggccgccact tcagcgccgg caacaacgac 1681 atagcgcact agtcttaagt ccaagtgtaa aatattgcat cacctcaaca ctcgtctgac 1741 ttaataaaaa tcaagttagc taagtttctc gctcttcatg cgtctctttg acctctagct 1801 ttagatctgc gtcgcactcc tccaccagtt tgtactaacc aagtgtgtat attttctatt 1861 cacaggttct gttgcgtact actcgtacat caccggtttt cgagggagcc gaaaacttaa 1921 gatcggagag ttctccttca ctcgaaacaa gacctcggga ttgaaaactt attggtcttg 1981 cgctcgagcg ggtgttcaca aatgcaaggc ccgtgtagtc accgcgcaag accacgatgt 2041 gactatcaaa tgcggacaac ataaccatcc gccctactaa agaatcatat taaaaccggc 2101 cgactttgga tcattgtata gaatcaattt atagcttatt tattgtagaa tacaaatctt 2161 gaaaatcgaa aaaccgtatt ttgtaaaatt tacactttaa cagtttttgc agtagtagac 2221 tttacactta agctaactca aagctaattt gtttcttaca gtatgcgatg atctggatga 2281 catgaagggc gccatcaagc acagcctact cacttttatt cggggacagc gcggctgcaa 2341 actgctggcc tttaatggcc acaactacgt gcgaaaccgt cgcagtaacc tgaagaccta 2401 ctggatatgc tccaaaaagg gaagcacgaa atgcaatgct cgggtggtca ccaatgtagt 2461 tgaaggtgtg cacaaaatag tactggaatc gtgccatcac acctgcctga acacggagcg 2521 aaaaaagcgg ctttcagtaa caaacgttgt ggggaaagcg cgaagcaagt cggaaaagtc 2581 tgtatccacg ggcttcataa aggaggaggg tgacgaggat ttaacactgg agctaaggac 2641 gctcaactta agcatcgagg accttaacaa cctgcaatga atcgagactc aaaatctagc 2701 catagcttgc gaactagaag tagactattt atatgtgaat ctaaaataaa ctctttgtct 2761 tgtttattta agcagaaatg tcctatatga tttaaagaaa ctaactgtat gtgcatgtgt 2821 gtgaatgatt gcgttgcctt taactaattc tgcctgtttt tctatgtttt agtgacattt 2881 gatgtgttaa cggatcccat cgtaaaaccc gatcaacacc agctgatgaa gcgcgttcgt 2941 ttgtccaaat ccatggaggg cgtgcactac gttcgcactc cggccgggaa tgtcgttctg 3001 cactgtgggg agcatcgtta cctgcggaat gccgcctata aggacaaggt ctactggaag 3061 tgcagcaagt ggcgcaagca atgccgctcc cgcgtcatca ctcacatctt gccgaatggc 3121 caatcccgct acgcagtcag tggcgtgcat aatcatccat agatcaaaga gcattcagaa 3181 gtctgaatcg ggacacatac atagctgtat agattaggca gctttttgta cagaatgatg 3241 tagtaaacga aattgaaccg aaatccattt ctagttttgc gcaataacac cttttaattt 3301 gtcagatctt aagcttgata tataaacagg cttaggatta ttttgcagaa gatagtattt 3361 attaaggtaa ggtgagtgtg ttgcaattga cttgtttaaa actttactta tgtttatgaa 3421 tagaccaacc tc //