Dbfetch
LOCUS NM_001300236 2407 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster labial associated factor (laf), transcript variant B, mRNA. ACCESSION NM_001300236 VERSION NM_001300236.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2407) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2407) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2407) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2407) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2407) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2407) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2407) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2407) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2407) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2407) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2407) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2407) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2407) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2407) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2407) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2407) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2407) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2407) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2407) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2407) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 2407) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2407) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 2407) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 2407) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2407 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2407 /gene="laf" /locus_tag="Dmel_CG14660" /gene_synonym="C6; CG14660; Dmel\CG14660" /note="labial associated factor" /map="82E1-82E1" /db_xref="FLYBASE:FBgn0020280" /db_xref="GeneID:40606" CDS 55..2322 /gene="laf" /locus_tag="Dmel_CG14660" /gene_synonym="C6; CG14660; Dmel\CG14660" /note="CG14660 gene product from transcript CG14660-RB; CG14660-PB; laf-PB; clone C6" /codon_start=1 /product="labial associated factor, isoform B" /protein_id="NP_001287165.1" /db_xref="FLYBASE:FBpp0311429" /db_xref="GeneID:40606" /db_xref="FLYBASE:FBgn0020280" /translation="MSRHGQHYISARSVSAKDLDDSESGGDKSKSKERVRNLVLKKVC RGRNVQDSPGYRGKAMLNCSNRTRKYSKHSKDNLHSGNEDGGMPKDTEYISSDHDDSP SWSQQSLLSSDRSKSYSQICSEILEESKERQEKAECAFRVYNINRSKLRRSHQQSLSR GPGSGSYGSSMASEYSSKSEAGYQDYDSPSTDPSREHVQMANVANIDKWTRPKQFKVE SYKMEIKERPNYRKTQEVSHSYSCPLESRISKGSLVTRHRARSCVCAQESSACSLCTA HSRSGKHHSEGCDAEVIDGPDYPVDCRSDIPTTATSQSRSQRDYLSSCCTRHRHHPHY HRQRSVPKTYQDRGNSPINIKTRRKTRDYQEPHFAFRTEKVEAAVQLSRSSASIGVQY PSQDENADWTDWTPDTTQGDRQFKGHDGDCLRSTEKKRSISNEQSPITLRNTNAKDVD IPDCFGSFAMNKHLSVITEDASQHHKDPDEDMIDSQLSNSVLLETYDEGEKYAYSYQY SYKPEICNNNQFVSDESDLKVSSKEGYQMDQEVRDYVMDKQELVHEGGSDASLSEVAK SKSFLSLKIYDADEALMEIPEDFEGPAIVLDDDADFLDITLTDDEEKIRAKLMAAALT TRKTTSSISPNISLRTRSPIEPSSLSYKPNVIFTRRSEVIKDNYTPRPDDRVALLAEK FLQSFSESAPNDYGWKPSKQEVTSAVSISHLFNENGVTRRGGDTPLCGDRQLLSVEFN RKLQRQLKVIVESFQ" ORIGIN 1 cagttccgtc ccccattccc ctgcagctac acccaagaag atctctgatt agaaatgtcc 61 cgtcatggtc agcactacat aagcgccaga agtgtgtcgg caaaggacct ggacgattct 121 gaatcgggag gagataagag taagagtaag gaacgagtaa ggaacttagt tctcaagaag 181 gtgtgccgcg gacggaacgt ccaggactct ccaggataca ggggaaaggc aatgttgaac 241 tgctctaata ggacaagaaa atacagcaag cattcaaaag acaatctcca ttcgggaaat 301 gaggacggag gtatgcccaa ggacacagag tacatttcaa gtgatcacga tgactcgccg 361 tcctggtctc agcagagcct gctatccagt gatcgttcca aaagctatag tcagatatgt 421 agcgaaatct tggaagagtc taaggaacga caagagaagg cagagtgcgc ttttcgcgtc 481 tacaatataa acagatccaa gctgcgtagg tcccatcaac aatccttgtc caggggtccg 541 ggaagtggga gttatgggag cagcatggcc tcagagtatt caagtaaatc ggaagcaggc 601 taccaggact atgacagtcc atcgacagat ccttcacgag aacacgttca aatggcaaat 661 gtggcaaata tagataagtg gactagacca aaacagttca aggtagagtc atataaaatg 721 gaaataaaag aaaggcccaa ttaccgcaaa actcaagaag taagccactc gtattcatgt 781 ccattggaaa gtaggatttc aaaaggttct ttagttacca ggcacagagc aagatcatgc 841 gtctgcgcac aagagtcctc ggcttgtagc ctttgcactg cccactccag atcaggaaag 901 caccattccg agggctgcga cgcagaggtg attgatggac ccgattatcc tgtagactgc 961 agaagtgaca ttcctacaac tgcgacatcg caatcgcgct cacaaagaga ttatctttcg 1021 agctgctgca cacgccatcg tcatcatcct cattatcatc gccagaggag tgtgccaaag 1081 acatatcaag atcgtggaaa tagtcccatt aacatcaaga cgaggcgcaa gacgcgcgac 1141 taccaggaac ctcacttcgc atttcgcacc gagaaagtgg aggcggcggt tcagctcagc 1201 agatcaagtg cctccattgg ggtgcaatat cccagtcaag acgagaacgc ggattggact 1261 gattggactc cagatacaac acagggtgac cgacagttca aaggtcatga tggcgattgc 1321 ttgagatcaa cagaaaaaaa acggtctata tctaatgagc aaagtccaat tacgctaagg 1381 aatacaaatg ctaaggatgt cgacatacct gattgttttg gatcatttgc catgaataag 1441 catcttagtg tcattaccga ggatgcatct caacaccaca aagatccaga tgaagatatg 1501 atcgatagtc agctaagtaa ttccgttctt ctcgagacct acgacgaagg tgagaaatat 1561 gcttatagtt atcagtacag ctacaaaccc gagatatgca ataataacca gttcgtttcc 1621 gatgaatctg atcttaaggt ctccagtaag gaaggctatc aaatggatca agaagtaaga 1681 gactatgtaa tggataagca agagcttgtc catgaaggtg gatcagatgc atctttgagt 1741 gaagtagcca agtcgaaaag ctttctaagc cttaagatat acgacgctga cgaagccctg 1801 atggaaattc cagaggactt cgagggccct gcaatagttc tggatgatga tgccgacttt 1861 ttggacatca cactgaccga cgacgaggag aagattcggg ccaagttgat ggcagcggca 1921 ctcactacca gaaagactac ctcctccatc agccccaata ttagtttaag aacccgttcg 1981 cccatagagc cgagtagtct gagctataag cccaatgtta tctttactcg tcgctcggag 2041 gtgatcaaag ataactatac tccccgtccg gacgatcgcg ttgccctgct tgcagagaaa 2101 ttcctccaaa gctttagcga atctgcccct aatgattatg gatggaagcc ctctaaacag 2161 gaggtgacct ctgcagtctc tatttcacat ttgttcaacg agaatggggt caccagaagg 2221 ggaggcgata ctccactttg cggggaccgt cagctgctgt ccgtggaatt caacagaaag 2281 ctgcaacgtc agctcaaagt gattgtagag agtttccaat gaaattcctt ggatcttata 2341 ttttctattt gcaattgcgt gtcagaaaat acatagcgga attcgttgac cgcctatgga 2401 agttctg //