Dbfetch
LOCUS NM_001299904 3086 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant D (CG3376), mRNA. ACCESSION NM_001299904 VERSION NM_001299904.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3086) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3086) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3086) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3086) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3086) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3086) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3086) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3086) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3086) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3086) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3086) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3086) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3086) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3086) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3086) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3086) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3086) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3086) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3086) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3086) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3086) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3086) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3086) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3086) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3086 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3086 /gene="CG3376" /locus_tag="Dmel_CG3376" /gene_synonym="aSMase; Dmel\CG3376" /map="60C4-60C4" /db_xref="FLYBASE:FBgn0034997" /db_xref="GeneID:37884" CDS 532..2712 /gene="CG3376" /locus_tag="Dmel_CG3376" /gene_synonym="aSMase; Dmel\CG3376" /EC_number="3.-.-.-" /EC_number="3.1.4.12" /note="CG3376 gene product from transcript CG3376-RD; CG3376-PD" /codon_start=1 /product="uncharacterized protein, isoform D" /protein_id="NP_001286833.1" /db_xref="FLYBASE:FBpp0310086" /db_xref="GeneID:37884" /db_xref="FLYBASE:FBgn0034997" /translation="MTQQQPPWPSPISSSSSNPRGKCWLILVLMAVLPLVADVGALPF LFTHIKPQINWTQPEMESWVIEEQPRSIEPHLEPVLHPNRTHRALSSDSTDAEFLQRL VSIRHNQTASSRMLWYDVAGGDGLVYPPFVDKALKLLNLKQVAFEIENSVMSKVTCTA CRAGAGMLQHQIQSGKTDAELIRMITDYCTNLNIQSARVCQGVAQLFGSELIYVLKRV NLSPDELCSFVIGDGCADVYNPYHEWEVIFPPVPKPPRLPDLPIPMEAAPFFKVLHIS DTHYDPHYAEGSNADCNEPLCCRLSSGRPATPNAAAGKWGDYRKCDTPKRTVDHMLSH IAETHKDIDYILWTGDLPPHDVWNQTKEENLAIIKDTVKQMVEMFPGVPIFPALGNHE SAPVNSFPPPYVNQVDISISWLYDELDIQWRRWLPQSVTHTVRRGAFYSVLVRPGFRI ISLNMNYCNNKNWWLLLNSTDPATELQWFIYELQSAEFSNEKVHVIGHIPPGHSDCLK VWSRNFYKIISRYESTVTAQFYGHTHYDEFEMFYDPHDLNHPNGIAYIGPSVSPYYDL NPGYRIYYVDGDHDATTRLVIDHESWIMNLKEANLYGYPIWYKLYTARAAYNMKALRP SDWNNLLNELTNNQELFELYYKYYWKNSPARPTCDAECKKRLICDCRSGRSHDRKHFC AEVESKIDEESSKSWKSWFYKGLTNSYSLLSSITYLPKYLLGYR" ORIGIN 1 gcattcagtg tcggcggttt gcggcgagcg gttggattcg gattctttgg tcggtaaaac 61 gcgaaatctt ctgtgcggcg ggtgaaatct tcggcagaag aaacaacaaa gcgacaagtg 121 tggagtgtgg agtgcatacc gtaccacgca gagataataa ttcggactgt gaagagtcgt 181 gagccaaaca aatgaatcgc aaataaatga gggcaatcac cggagcagag atgcgagtta 241 tggcacaata ttgcctataa atagtgtaac tgaaggaaag aaaaagtggc agccgtcgaa 301 gaaaacacaa gaaacgaaaa gggaaagagc cgagccacaa ataaagctaa agaaaacaga 361 aatcgaaaga acaaaggcgg gtttgttgtg ggtcaagaac gaaagttcgg cccaaaagtg 421 cccgttccgt atcgattgtg catttttgag cggttttgaa gaggtcaagc cgcatactcc 481 agtccacacc tggttgaacc tggcgtagcg aagtccacga gtccgcacat tatgacacag 541 caacagccgc cgtggccaag tcccatttcc agctccagtt ccaatcccag gggaaaatgc 601 tggctcatcc tcgtacttat ggctgtgctc ccactggtgg cagatgttgg agccctgccc 661 ttcctgttca cgcacatcaa gccgcagatc aactggacgc agccggagat ggagagctgg 721 gtaattgagg agcagccgcg cagcatcgag ccccacctgg agccagtgct ccatccgaat 781 cgcacgcacc gcgctctgtc ttcggacagc acggatgcgg agttcctgca gaggttggtc 841 agcatcaggc acaaccagac ggccagttcc aggatgctgt ggtacgacgt ggccggcgga 901 gatgggctgg tgtacccacc gttcgtggac aaggccctca agctgctgaa cctcaagcag 961 gtggcctttg agatcgaaaa cagcgtgatg tccaaggtga cctgcaccgc ctgcagagcg 1021 ggagccggga tgctgcagca tcagatccag tcgggcaaga cggatgcgga gctcattcgc 1081 atgatcacgg actactgcac caatctgaac atccagagtg cccgggtctg ccagggcgta 1141 gcccaactct tcggcagcga gctgatatac gtgctgaaga gggtcaatct gagtcctgat 1201 gaactctgca gctttgtgat tggcgatggt tgtgcggacg tgtacaatcc ctatcacgag 1261 tgggaggtca tattcccacc agtgcccaag ccacctcgcc tcccagatct gcccattccc 1321 atggaggcgg ctcccttctt caaggtcctg cacatttccg atacccacta cgatccccac 1381 tacgcggagg gatcgaatgc ggactgcaat gagccgcttt gctgccgact gagcagcggt 1441 cgtccggcca cgcccaatgc agctgccgga aagtggggcg actaccgcaa gtgcgacacc 1501 ccgaagagga cggtggacca catgttgtcc cacatagcgg agacccacaa ggacatcgac 1561 tacattctat ggacgggcga tctgcctccg cacgacgtgt ggaaccaaac caaggaggag 1621 aacctggcca tcattaagga cactgtgaaa cagatggtcg aaatgttccc gggagtcccc 1681 atcttccctg ctctgggcaa ccacgaaagc gcaccggtga acagcttccc accgccgtac 1741 gttaaccagg tggacatatc tattagttgg ctatacgacg aactggacat ccagtggcgc 1801 aggtggctgc cccaaagtgt gacccacacg gtgcggcgcg gtgccttcta ctcggtgctg 1861 gttcgacctg gattcaggat catctcgctg aacatgaact actgcaacaa caagaactgg 1921 tggctactgc tcaactccac ggatcccgcc actgagctac aatggttcat ttacgagctg 1981 caaagtgcgg agttctccaa cgaaaaggtg cacgtcatag gtcacattcc accaggacac 2041 tcggactgcc tgaaggtctg gtctcgcaac ttctacaaga tcatatcgcg ctatgagagc 2101 acagtgactg ctcagtttta tggacacacg cactacgatg agtttgaaat gttctacgat 2161 ccgcacgatc tgaaccatcc caacggcatt gcgtacatag gtccctctgt atcgccctat 2221 tacgatctga accccggcta tcgtatctac tacgtggatg gcgatcatga tgccacgacg 2281 cgcctggtca tcgaccacga gtcctggata atgaacctca aggaggccaa cctgtatggc 2341 taccccattt ggtacaagct ctacacagcc cgagcggcat ataacatgaa agccctgcgt 2401 cccagtgatt ggaacaacct gctcaacgag ctgaccaata atcaggagct attcgagctg 2461 tactacaaat actactggaa gaactccccg gcgcgaccca cctgcgatgc ggagtgcaag 2521 aagaggctca tctgcgactg tcggagtggg cgttcccacg atcggaagca cttctgtgcc 2581 gaggtcgagt cgaagatcga cgaggagtct tccaagtcat ggaagtcctg gttctacaag 2641 ggattgacca attcctatag ccttctgtcc tccatcacat acctgcccaa atacctgctc 2701 ggatatcgct gattccgatc tgagatggtc gtttgaggtc atccaactgc aagtcaatgc 2761 aatcgcaacg aaggaaaact cctaccccat aagcttacta tgtgataact agtgcttaaa 2821 accatttcgc ttagtgtacg ttaacgcaat gatgtcccaa aactgcctgc tttgaaacct 2881 tacaatcgcc cttcggaatc tgagtcagtg aagaatagtc atttatctgt aatcgagtcg 2941 atgctgttgc ccactccgca gcatttgcgg tcgtggcatg ttgcgcgctt ttacgcaatg 3001 gaaattgtcg agcaaattac cttctaagac acctaattgt aaagctaacc taggtcttaa 3061 cttaaataaa gtgcaattat ttttat //