Dbfetch
LOCUS NM_001299796 2947 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster quaking related 58E-2 (qkr58E-2), transcript variant B, mRNA. ACCESSION NM_001299796 VERSION NM_001299796.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2947) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2947) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2947) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2947) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2947) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2947) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2947) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2947) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2947) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2947) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2947) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2947) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2947) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2947) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2947) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2947) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2947) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2947) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2947) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2947) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 2947) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2947) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 2947) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 2947) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2947 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2947 /gene="qkr58E-2" /locus_tag="Dmel_CG5821" /gene_synonym="CG5821; Dmel\CG5821; qkr58e-2; qrk58E-2" /note="quaking related 58E-2" /map="58D8-58E1" /db_xref="FLYBASE:FBgn0022985" /db_xref="GeneID:37562" CDS 258..1508 /gene="qkr58E-2" /locus_tag="Dmel_CG5821" /gene_synonym="CG5821; Dmel\CG5821; qkr58e-2; qrk58E-2" /note="CG5821 gene product from transcript CG5821-RB; CG5821-PB; qkr58E-2-PB" /codon_start=1 /product="quaking related 58E-2, isoform B" /protein_id="NP_001286725.1" /db_xref="FLYBASE:FBpp0308618" /db_xref="GeneID:37562" /db_xref="FLYBASE:FBgn0022985" /translation="MAENGLRVPGSSAVASAVASTATGVGGGSAAGTAGAGTGVVPTG VSGGTSNGEHENEHNANADGEKAQPAPAVQKYMQELMTERSRMENHFPLAVKLIDEAL ERVQLNGRIPTRDQYADVYQQRTIKLSQKVHVPIKDKKFNYVGKLLGPKGNSLRRLQE ETQCKIVILGRFSMKDRAREEELRNSADAKYAHLNLPLHVEVSTIAPPAEAYARVAYA LAEIRRYLTPDKHDDIRQEQYRELMEDPEAAKKLTLRQLQQQSNAAASGAGGGGGGGG GNGNGGAAGSGSNNGNGNQRSGGNYRQKFQQQSHYRHNEETVYFRSHNNAYHQPKPYV PAAQRGNAMHTTLPPQAIVRASPPGMVVSAASFNGRNAGLGNAGGGGIMANSIVATTG GGIGGAVPPNMRYRPAAPYQFVKK" ORIGIN 1 ctgcagaagc acgagagaca gcccgagaga ccggagttgc cggaccgagc cgctgacata 61 gtaaatgtcc gaataaaata cacacttgga aaaagagaga aaaattaggg ccattgggaa 121 ggctgaagtg tgctaagtta gcaatcatac cgaatcgaca gcaaaagcga tcgcccgcaa 181 tctgcgcacg gaaaatccga gactcggcga cttagcagga cgatagagcg acagcgatcc 241 cgaaggcagg acgacaaatg gcggagaacg gactgcgcgt gccagggtca tccgcggtgg 301 cctctgcggt ggcttccact gcgacgggag tcggcggtgg atcagcagcg ggaactgcgg 361 gggccgggac aggagtggtg cccaccggcg tcagcggcgg gacgagcaac ggggagcatg 421 agaacgaaca caacgccaac gcagacggcg agaaggccca gccggcgccg gcggtccaga 481 agtacatgca ggagctcatg acggagcgat cgcgcatgga aaaccacttc cccctggcgg 541 tgaagctaat tgacgaagct ctggagcgtg tgcagctaaa cggacgcatt cccacgagag 601 accagtacgc cgatgtctac cagcagcgca ccatcaagct gtcccaaaaa gtgcacgtgc 661 ccatcaagga caagaagttc aactatgtgg gcaagctact ggggcccaag ggcaactcac 721 tgcgtcgcct gcaggaggag acgcagtgca agatcgtcat acttggtcgc ttctcaatga 781 aggatcgcgc acgtgaggag gagctgcgca actccgcgga cgcgaagtac gcccacctga 841 atcttcctct gcacgtcgag gtgtccacca ttgctccgcc cgccgaggcg tacgctcggg 901 tggcgtatgc cctggccgag attcggcggt acctcacgcc ggacaagcac gatgacatcc 961 gccaagagca gtaccgcgaa ctcatggagg atccggaggc ggccaagaag ctgacgcttc 1021 gccagctgca acagcagtcg aatgcggcag ctagtggtgc aggaggagga ggcggtggtg 1081 gaggcggaaa cggaaatggc ggcgcagctg gatccggcag caataatggc aatgggaacc 1141 agcgctccgg cggcaactac agacaaaagt ttcagcaaca atcacactat cgccacaacg 1201 aggagactgt ctattttcgc tcacacaaca atgcgtacca ccagccaaaa ccctatgtgc 1261 cagccgccca acggggcaat gccatgcaca ccaccttgcc accgcaagca attgtgcgag 1321 cctcaccgcc cggaatggtc gtcagtgcgg ccagcttcaa tggccgaaat gccggactgg 1381 gtaatgccgg cggtggcgga atcatggcca atagcatcgt ggccaccact ggcggtggca 1441 tcggtggcgc tgtgccgcct aacatgcgtt accgtcccgc tgccccctac cagtttgtca 1501 agaaataata cagatgggag gatgcaccgc ccgctgccgt tcgctgtttg ttcaactatt 1561 cctcaccatc attgatgcct catccggaag tattcacgcc catctgtcat acccatccaa 1621 acacccacaa ccacacacag ctccaaaggg tggaaaccaa aacgaaacga atgagtaaat 1681 ctatgtttaa gaaaactagc ctaagtagac aaatgctccg aggaacagac gaacacctca 1741 gccacccaac caaaaccaaa actaaccgac cagacaaaca cccaccaccc cacacgcacg 1801 caacctcttc tcgaggattg ggttcgaagg atcacgaggg tctgcgatct aagactttgg 1861 aatccgtgtg ttgggccctg cgagcatttg gaagagaaga attgaagaag aagaacgagg 1921 aggaggtgga gaacgcctcg atgttggatc gggccgaatc gaatggacgc attcaaggtt 1981 ggtcccagtc gagccaaatg tccttgtttt gttttgtcgc atattattaa cattttaatt 2041 ttaccactga cgcgtgcgaa gatttcatca ctttgtaatt tatataaatg aatatatata 2101 tctccttatg cttactatca tacgtatcct tctcgcagtc gctttaactc tattgctttt 2161 ccaactctgc gtttaagttt atcccatttt ttgttgtaat gcgttttgta ttatgtttac 2221 gtttagaaga ggaggcttct tatttttatt tgttacgtcg ccaggacaga aaaagcaact 2281 gcaaacgatc atgaataata tatataacaa gtatatacaa gcggtatgat ttataacaca 2341 tagtgcatat gcaacaccac acgatcatac gcgcgtacgc atattcaaaa catcagcata 2401 ttcacctaaa gccgtaaagt ttaaaccaaa tgaacattag aaacgcaaac gagaatctaa 2461 aacacagatc ggagcaggag accgatttcg cctacgataa tgcaaatgca acggacatag 2521 caaaccacat acgatcagag aaaatatgca aacacataca tacatacata attgttattg 2581 ttgttaaaag caactaaaat tgtaatagaa attatgcaaa tatacatacg aatatgacga 2641 caaatgttaa ttgcagccta gttattattt tgttcattca cacccacatc ggaacggaac 2701 ctaagatata gtcttaaata aagagagagt gcagccagca gatccgcacg gactaggcct 2761 agatctagac cttgttgacg atgcttctac agccacaaga cacacgaaac ttgaacacag 2821 ccctatttgt attgattttg aacattgaac acactgcatg taaaccccat acacatatat 2881 gtaaacgtac gaaagtactg tgcatcatta tgtattgctg attatcgtta aataaatttc 2941 caatttg //