Dbfetch
LOCUS NM_001299359 3359 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster pre-lola-G, transcript variant D (pre-lola-G), partial mRNA. ACCESSION NM_001299359 VERSION NM_001299359.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3359) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3359) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3359) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3359) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3359) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3359) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3359) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3359) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3359) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3359) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3359) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3359) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3359) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3359) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3359) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3359) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3359) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3359) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3359) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3359) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3359) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3359) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3359) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3359) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). On Oct 19, 2015 this sequence version replaced NM_001299359.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on the 5' end. FEATURES Location/Qualifiers source 1..3359 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene <1..3359 /gene="pre-lola-G" /locus_tag="Dmel_CG44025" /gene_synonym="CG44025; Dmel\CG44025" /note="trans-splicing precursor of lola-G" /map="47A11-47A11" /db_xref="FLYBASE:FBgn0264817" /db_xref="GeneID:14462577" CDS <1003..2313 /gene="pre-lola-G" /locus_tag="Dmel_CG44025" /gene_synonym="CG44025; Dmel\CG44025" /exception="rearrangement required for product" /note="CG44025 gene product from transcript CG44025-RD; trans-splicing precursor of lola-G; CG44025-PD; pre-lola-G-PD" /codon_start=1 /product="pre-lola-G, isoform D" /protein_id="NP_001286288.2" /db_xref="FLYBASE:FBpp0312610" /db_xref="GeneID:14462577" /db_xref="FLYBASE:FBgn0264817" /translation="LSRKENTAPDVASTAEIQRSFQRSILNGKQRDEQKIQLPGSRRK RLSVTEVSDMLFEFYKTKSAKVPKAEQPHRQVSPTSGEILDPSTISAIAVYGTASETA SKNLNADEVMRVQNATATRVVGAAAGAAASFHPRPKYTLKTAASSTEHTTAIPTSVLV ANSAAALTPKPQAAVIAEALMRNGLHNFQQQLRAQEILRQQTPHRRIKEENDVEIAGG DITPTKILENLLRKQQERDLRHSECENEPGYSTEDDEEGRYHAFDDIHLMEQSGGKFG NNSGMGMFNANAHGGSASSILDAHQAFRNLEFTLSDYGGSSSNGSTTSPNGIGLDGEP VYECRHCGKKYRWKSTLRRHENVECGGKEPSHQCPYCPYKSKQRGNLGVHVRKHHTDL PQLPSKRRSKYSMNRENGMSGSMSDDSQGKLIIDFNGKGELETK" ORIGIN 1 gcagtgttga ttgtgttgcc gtgtggacgc tttttggtgc gttggtcgtg ggctgaaatg 61 caaattacca gcgaaaaaag ctgtaaaagc ttgcaatagc cactgtgata ttaaataaaa 121 aaattatttt aaaattttaa atgattatgt tgcatcggcc caggccaact tccaaaggca 181 aaaacagcag cctgcactag aaatgtgctt ttaaacgtgt gttgtgatta taaatatatt 241 aaattaaata tacctggtga caataataag tgtctagata tgtgcctcat tttctagcac 301 tttcagatat tttttaatta ccaggcttta ttatcacata actacacaaa aaaaaagcag 361 tgaagaagca cattccacaa attattaaac atacaaatta atatgcactt ttttttattt 421 atttataggt gctacacatt tgcggattaa cacagtgctt aatttaaatc atttcatata 481 tagctaatct attttttttt ctattttcta gatggctcag gttatgagtt attgtaaaac 541 ggttttggtt aaaaaaaaaa aaaactcacc catcacaaaa aaccatcaac acacatcagc 601 cacaccatca acatccatca tcaaacaaaa atcaatgtgt tcatttgccg agcttttcaa 661 ttttatttgt ttatgccaaa gatgtgttta ccgaattaat aaaatttttt acaatgtgta 721 cttttatttg tttaatttta aaaaaatgcg aaattatgcg ttttgcttta cttatttatt 781 tacttgtagt gtattttgcc tatttattgc atgccattca tctaacaaca ttttttgccc 841 taatcccagc agtcccagtg ttaaaacttg ctttttcatt tgacgcagct caatccaaac 901 gattgacata gaccaaagcg aaggaacttc gaacggagtg acttgaacga aaaaacccag 961 aaactaaatt aaccaatcgc aaccatgttt ccaattgcag atttgagcag gaaggagaac 1021 accgcacccg atgtggcgtc caccgccgag attcagcgca gtttccagcg cagcattctc 1081 aatggcaagc agcgggatga gcagaagatc cagttgcccg gatctcggcg caagcgcttg 1141 tccgtcaccg aggtctccga catgctgttc gagttctaca agaccaaatc ggccaaggtg 1201 cccaaggcgg agcagccgca ccgtcaggtc tcgccgacat ccggtgagat cctagatccc 1261 tcgaccattt cggccattgc cgtttatggt acggcctccg agacggcctc aaaaaacttg 1321 aatgctgatg aagtgatgcg agttcagaac gccacagcta cgcgtgtggt gggtgctgcc 1381 gctggcgccg ccgcctcatt tcatccaagg cccaaataca ccctgaagac agcggcatcg 1441 tccacggagc ataccacggc catacccact tcggtgctgg tggccaatag tgcggcggct 1501 ctgactccga aaccgcaggc agccgtaatt gccgaggccc tgatgcgaaa tggactgcac 1561 aacttccagc agcagttgcg tgcccaggag atactgcgcc aacagacacc ccatcgtcgc 1621 atcaaggagg aaaacgatgt cgaaatcgct gggggcgaca taacacccac taaaattctg 1681 gagaacctct tgcgaaagca gcaagagcgc gacctccgcc actctgagtg tgagaacgaa 1741 ccgggctatt cgaccgagga cgacgaagag ggtcgctatc atgccttcga tgacatacac 1801 ctgatggagc aaagcggtgg caagttcggc aacaactccg gcatgggcat gttcaatgcc 1861 aatgcccatg gaggatcggc cagctcgatt ctagatgccc atcaggcctt ccgcaacctg 1921 gagtttacac tcagcgatta tggcggcagc agcagcaatg gcagcaccac cagtcccaat 1981 ggcatcggcc tggatggcga acccgtatac gagtgccgtc actgcggcaa gaagtatcgc 2041 tggaagtcca cactccggcg ccacgagaat gtcgagtgtg gcggcaagga gccatcgcat 2101 cagtgtccct actgccccta caagtcgaaa cagcgcggca atctcggtgt ccatgtgagg 2161 aagcaccaca ccgatctgcc ccagctgccc agcaagagga gatcgaagta ctcgatgaat 2221 cgcgaaaacg ggatgagcgg ctccatgtcc gatgactcgc agggcaagct gatcatcgac 2281 ttcaatggga agggagagct tgaaaccaaa taaatttgta cggggaccga gtgatgcttc 2341 catttgatat acaatatatt ttacgtctgg tgtcttgttt tgtccattgg atttgtggaa 2401 atttatttct tgtcattcat gtgtcatccc aaatatttaa tgtttacttg tagtaattta 2461 tgtaatgtaa gcaaatgcaa gccaatctaa tcaagcatat aatcaaatta gtcttaaagc 2521 cttttttcta acgatgcatt tatgcgttaa agcatcagtt aatatctctt aaattgtata 2581 aaatgatcat tcaccaaatg tcaattttat acttacgatt aagtgtgcaa aatattatca 2641 aacaacactc aaatattttc taaggtctct actatttaag atatcacgat gttgtccaga 2701 aaaaaagtat ttagaaaggg ttcgcctcgc cgtgtgcgta tttccaaaaa gttcccagca 2761 tcttgcccag aaaccctctg ccatccaacg atctcttgac ttggcttgat taagctacta 2821 agaccaaaac ttttggtaac tactcgataa gctcaatcga tgccatttac aatgatatac 2881 attatgactg aattagttaa gagaattgca ttgaactgac aactgaacaa accattaatt 2941 aaccaattga aaaccaacta ttcctcgccc tgaagacatt cgtttcatat atttatggac 3001 tttaagactg agtttattgt atcttaaaaa ttattaaccc atgaccaaaa aaaaaacaaa 3061 aaaattggaa cattgtacga ttcccaaacc aaaaaccaaa cacttattat gcctaaatgt 3121 tttaactgat attaatgttt gtatcttacc attaagcttg tgtgccgtca cattgaatcg 3181 cccgatattt tatgattgta tacttaataa gattataatt cctaactgca tatcacgtgg 3241 tcttcaccga tcgacgaaga cacgattacg aactgtgggc agtgtgactg ctaaaataag 3301 acatgatttt ataatgaact tttcatatac aatgtttaca ttttaaataa aacgcagat //