Dbfetch
LOCUS NM_001299212 3393 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster hermes (hrm), transcript variant B, mRNA. ACCESSION NM_001299212 VERSION NM_001299212.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3393) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3393) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3393) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3393) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3393) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3393) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3393) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3393) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3393) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3393) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3393) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3393) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3393) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3393) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3393) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3393) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3393) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3393) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3393) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3393) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3393) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3393) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3393) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3393) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3393 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3393 /gene="hrm" /locus_tag="Dmel_CG11665" /gene_synonym="CG11665; Dmel\CG11665; Hermes" /note="hermes" /map="41F6-41F6" /db_xref="FLYBASE:FBgn0033028" /db_xref="GeneID:35499" CDS 321..2297 /gene="hrm" /locus_tag="Dmel_CG11665" /gene_synonym="CG11665; Dmel\CG11665; Hermes" /note="CG11665 gene product from transcript CG11665-RB; CG11665-PB; hrm-PB" /codon_start=1 /product="hermes, isoform B" /protein_id="NP_001286141.1" /db_xref="FLYBASE:FBpp0311514" /db_xref="GeneID:35499" /db_xref="FLYBASE:FBgn0033028" /translation="MHKEKIINSQNASKINQKDHKPNGNTNESRHKTVSLINKKDDKE YDLVPPDGGWGWLVLLGSCLTNILIPGTIKSFGVLFSEFTDAFNSSPTKAAWIPALCY FLYSSLGPVSSILSVKYSYRTVTLLGGASASLGMILSFWASSIEFLYISYGVLVGIGA GLSFPPTVYIVTSYFAKLRGLANGLCISGSALGSIILPPLLRWLLETYGYHGSCLIMG GITLNVFVAALFYEPVEQHMVRVPRARQALENIPEEEDIGIVMKFENVDEPVPKNEPA DKPLLPYNSPPSPLYLPGDERLQFVRSASAAVVQSYSKSGDEFQSRSRKISTPVRLPQ RNQTFTPGQLNSQSSLYAVPEGRSSSNKLTLRNSSKSRLSKRSPSTSSFLYVSTPYHG STLSFQPKEFSSHLSLRSMGSSGTGHAGDSTGQDGSYADVDARGQAQQPQRSKFFDLS LLKDPMYLVILISNSTNAISYTNFIILLPSFGEARGFNKSLSAYLLSVVSATDLIGRI GGSALSDMGYIPKTWYFVGGLSISGLSLALLPFAWTYSSVCFWCALFGLASGIYVGIT AVIMADMLGTERLTSSYGISLFVNGLLQLVGPPLCNYWFEAVNDYNPLFHALGLTLLA GASLWSFMPWINRRKANAEEQLDAQIEKAAVDSY" ORIGIN 1 ttcggtcaca ctggacgtac gtgaaaacaa gtgacaatct tttgtttttc acattttgtt 61 tttgtatata ttttgaaaaa atacataaaa ctaataagtg taacataaag tcgtgtacat 121 ataaatgttt taaaaacttg tttgccactc gaaaaattca cgcaatatat caaatggatc 181 ggttttaaat tactttacat cagttgtaat gcaaaattat tagcgaaaag taaaaaaata 241 cgcctcccct ttgtgcagaa attggtgtgt gatcttatct aggacgaatt tataaaagca 301 acatacaagg ttcgaaggcc atgcacaagg aaaaaattat taattcacaa aatgctagca 361 aaataaacca aaaagatcat aaacccaatg gaaatacaaa tgaaagtaga cataaaacag 421 tgagtttaat aaacaaaaaa gatgacaaag aatacgacct tgtcccacct gatggtggtt 481 ggggttggtt agtgctgctg ggctcgtgct tgactaacat tttaatccct ggcacaataa 541 aaagttttgg agtattattt tcggagttca ccgatgcatt caactcttct cctacgaagg 601 ctgcctggat accagccctg tgttattttc tttatagttc attgggcccg gtttcaagca 661 ttctatctgt gaagtactca tatcgtactg tcacccttct tggtggggca tctgcgtcac 721 tgggtatgat actctccttc tgggcatcat ctattgagtt cttgtatatc agctatggcg 781 ttttggtcgg aatcggggct ggtctctctt tcccccccac agtttacatt gtgacgtcgt 841 attttgcgaa actacgcgga ttagcgaatg gcctctgcat ttccggtagt gctttaggca 901 gcataatttt gccgcccctt cttcgttggc tactagagac ctatggctat cacggctcct 961 gcctaattat gggtggcatt actttgaacg tatttgtcgc tgctcttttc tatgagcctg 1021 ttgaacaaca tatggtacga gtacctcgtg ctcgccaggc tttggaaaat attccagaag 1081 aggaggatat tggaatcgta atgaagttcg aaaatgttga cgagccggtt cccaaaaatg 1141 agccggctga caagccattg ttaccatata attcgcctcc ttctcctctg tatttacctg 1201 gcgatgagag gctgcagttt gtgcgtagcg catccgcagc tgttgtccaa agctactcaa 1261 agtctggaga cgagtttcag tctcgatcgc gtaagatcag tacgccggtg aggttacccc 1321 agagaaatca gacttttacg cctggccaac ttaactcgca atcatcattg tacgctgtgc 1381 cagaggggcg atcaagctcc aacaaactga ctctgcgaaa ttcgtcaaag tcacggttat 1441 ccaagcgctc gccttcaaca agcagttttt tatacgtcag cacaccatat catggcagca 1501 cattgtcgtt tcaaccgaaa gaattttcct cgcatttgtc ccttcgctct atggggagta 1561 gtggaacggg acatgcaggc gactcaaccg ggcaagatgg atcttatgcc gacgtcgacg 1621 cccgaggcca ggcacaacag ccgcaacgat cgaagttttt tgatctaagc cttttaaaag 1681 accctatgta cttggtcata ctaatttcga attcgacgaa tgccataagc tacacgaact 1741 ttattatatt gctgcccagt tttggagaag ccaggggctt taacaaatca ttatctgcat 1801 atttgctttc agttgtatca gccacggatc taattggacg tattggcggg tcagcacttt 1861 cggacatggg gtacatacct aagacctggt actttgttgg tggcttgtcc atatcggggc 1921 tttctcttgc ccttctgcct tttgcatgga catacagctc tgtatgtttt tggtgtgcac 1981 tctttgggtt agcttctggt atttacgtcg gaataactgc agtaatcatg gcagacatgc 2041 ttggaacgga acgcttgaca tcatcgtatg gcatcagcct tttcgttaat ggcttgttgc 2101 agttggttgg gccgccatta tgtaactact ggttcgaggc ggtcaatgat tataatcctc 2161 tcttccacgc cctcggctta acgctcctgg ctggagctag cctttggagt tttatgccat 2221 ggattaaccg acgcaaagct aatgcggagg agcaactaga tgcacaaatc gaaaaagcgg 2281 ctgtcgatag ctactaaatg gtcaaacaac tctcgtacca aaccacgtac aataacaatt 2341 agatttaagg cttaaaacgg cgtacaaaca gtgatgaaga tagcagccag gactaaaaga 2401 ccattaacat tttttgtaac ctttgattcg tttcttccag ctgatttatt gtattactgc 2461 ttagtcgtaa ttagtacgtt gttaattact acaattattg tttgtttaat accagtacta 2521 taatattcta gaccgtataa aaaattaaaa tgaatgcagt gaaaagtcgt aaaaaataac 2581 gttttataaa tattttttca ataaatacgt aaaaacaata aaaaatatga gatacaataa 2641 aaaatacagg aaatatacaa gaaaagaatg ggaaacaaga caaaaaattc gcattattaa 2701 attgtaccct tgttttatat tattttttgg tgttaatatt acgattagaa tgataagatt 2761 taggtgtctt ttttttaatg gtgagtagac tttaagtgag cacacacgaa aaatgaaaaa 2821 tatttcaagt tcttcaattt acgtgaattt tcgtgcatta acaagcccac atcagtggca 2881 cgttctgtaa attattactt ttagtgttac ccagtgaaaa gaaaactttc actcaacatc 2941 gggtgtagat ttctgaaaag cgtgtccccg ctgcccagcg ggcgcgttgc cttcaagtgc 3001 cacgctattt gggaggcgct aggaaagccc cacgtccgat aagcaacaaa cgacgctgac 3061 attcaagctc tcccaattca aattccaaaa tcataggaat aatttcttaa ctcgccagcc 3121 tcagcaacca caaccacctt agtaccagct ccagcaacgc aaatagcatc actaacgaca 3181 accaagtcag ccacaataac ctccgtcaat ccaatgccag catcaacaac accaaacgca 3241 acaccgacca aaatcaacaa aaactgcttt cccagcaacg attctagcac aaatcaagtc 3301 tctgacagca acaaaactca accctttcac aaaccacctc caattgtggt caaaaattgt 3361 gaatctctga acggactttt cagactcata gat //