Dbfetch
LOCUS NM_001299101 3127 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant F (CG5758), mRNA. ACCESSION NM_001299101 VERSION NM_001299101.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3127) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3127) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3127) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3127) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3127) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3127) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3127) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3127) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3127) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3127) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3127) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3127) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3127) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3127) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3127) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3127) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3127) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3127) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3127) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3127) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3127) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 3127) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3127) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 3127) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 3127) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3127 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3127 /gene="CG5758" /locus_tag="Dmel_CG5758" /gene_synonym="Dmel\CG5758" /map="36E5-36E5" /db_xref="FLYBASE:FBgn0032666" /db_xref="GeneID:35083" CDS 332..2209 /gene="CG5758" /locus_tag="Dmel_CG5758" /gene_synonym="Dmel\CG5758" /note="CG5758 gene product from transcript CG5758-RF; CG5758-PF" /codon_start=1 /product="uncharacterized protein, isoform F" /protein_id="NP_001286030.1" /db_xref="FLYBASE:FBpp0309465" /db_xref="GeneID:35083" /db_xref="FLYBASE:FBgn0032666" /translation="MSRKMLQVPVATLVLLSLLPIAHVAAASATAADATAATAASTTS TGIDASLKNAKLIEAKVLPDLAILQRVNQEDEKWQQVYRFIDDGFPVLELYGYKPLPD LPYTLIVPKIDVRSIEKPRLKEFMLEHVVPGKIFDSYNGNGNSKEEEESFGNGNGHKI VFRKLEKSHNNVWLLNGQQILHKLRINENLMAIAIDGYLGDRKSPYSKRNIQETNNRY NDPQPLEQPNITNAHAKVEPVIKESKASPLMSFLANMKTGTKVFQHFLSKSNLTRIMD DNAYTVLIPSDNAFQRWHPIDWGFYPFSVPEFTESVLRNHFLPMQRPLRLADVRNMDE VVVTTMGGEDVVFHGQPTPTVNNVSIMSDYNLSNGNQVFIISEVLFVTEAVVSKLHQM HKDKETPPLLAFPWFGAQFLSHSFLALERDPRFTQITRYLNSAEIAPHISGANYTFFV PEDRAFEKQGFDKLSDEVMASQRGVKMLLNHFVKGRLYNRDLRDNEVFETIGGGHIKI TRNPGSNYTSVNNAQITESEVFVYNLGTMYYLDDILYSHMLRDFVSKSTKTRSNRHGS DSGGGSRSTSRPSDVEIVPNEFEGEHNGGDYAIHGDDEDFEDEIITPKALPVQIYELP K" ORIGIN 1 ccactaataa aaccgaaagc aatccaatta acgccaaatg ctcaatgaaa atgtgaaaag 61 aaaggcgcag aaaatcactt gacaattatg taaagcttct ctcgccgaaa acaagtttgc 121 aaacaacaaa aaatgaataa actcgtggta ccgtaaaact atcaaaactg aaactaaaga 181 acaagtggca acaacccaac caactcaaag aaaacaacta acgaaaactc tccaaacaaa 241 agtgctagca attaaaaata atttctcagt tccctaacga gcaagaatag aggaacacga 301 aatttaataa aacagcaacc gaatctctcg aatgtcgcgc aaaatgttgc aagtgccggt 361 agcaacactt gtgttgctgt cgctgctgcc gattgcccat gttgctgctg cctcagccac 421 tgccgcagat gcaacagcag caactgcagc atccacaacg tcaaccggaa tcgatgccag 481 cctgaagaat gccaagctga ttgaggccaa agtgctgccc gacttggcca tcctgcaacg 541 cgttaaccag gaagacgaaa agtggcagca ggtctaccgg ttcatcgacg atggctttcc 601 cgtcctcgag ttgtacggct acaagccgct accagacctg ccgtacacgt tgattgtgcc 661 caaaatcgat gtgcggagca ttgagaagcc gcgactgaag gagttcatgt tggaacatgt 721 ggtgcctggg aaaatcttcg acagctacaa tggtaatggg aacagcaagg aggaggagga 781 gtccttcggc aatgggaacg gacacaaaat cgttttccgt aaattggaaa aatcccacaa 841 caatgtttgg ctactcaatg gccagcaaat actccacaag ctgcgtatca atgagaacct 901 gatggccatt gcaattgatg gttatttggg cgataggaag tcgccctact ccaagcgcaa 961 tatccaggaa acgaacaacc gctacaacga ccctcagccg ctggagcagc cgaacattac 1021 gaatgcacat gcaaaggtgg agcccgttat caaggagtcg aaggccagtc cgctgatgtc 1081 ctttttggca aacatgaaga ccggcaccaa ggtcttccag cacttcctct ccaagagcaa 1141 tctgacccgc atcatggacg acaacgcgta tacggtgctg attccgtcgg acaacgcctt 1201 ccagcgctgg catcccatcg actggggatt ctatccgttt tccgtgccgg aattcactga 1261 gtcggtgctt agaaaccatt tcctgcccat gcagcgaccc ctgcggctgg ccgatgttcg 1321 gaacatggac gaggtcgtcg tgaccaccat gggtggcgag gatgtcgtct tccacggcca 1381 acccaccccc acggtgaata atgtgagcat tatgtccgac tacaacctct ccaatggcaa 1441 tcaggtgttc attatctccg aggtgctctt cgtcacggaa gctgtcgtct ccaaattgca 1501 ccagatgcac aaggataagg agacacctcc gttgctggca ttcccctggt ttggagcaca 1561 gttcctttcc cattcatttt tggccttgga gagagatcca cgatttaccc agattaccag 1621 atatttgaac agtgccgaga tcgcccccca catttccggc gccaattaca cgttctttgt 1681 gccagaggat cgggccttcg agaagcaagg attcgacaag ctatcagatg aggtcatggc 1741 ctcacaacgc ggcgtaaaaa tgctgctgaa ccacttcgtt aagggacgac tgtataaccg 1801 tgatctgcgc gacaatgaag tctttgagac gatcggcgga ggccacatta agatcacccg 1861 taacccgggt agcaactata ccagcgtcaa taatgcccag attacggaga gcgaggtgtt 1921 cgtatacaac ttgggcacca tgtactacct ggacgacatc ctgtactcgc acatgctgcg 1981 cgacttcgta agcaagtcca ccaagacgag atccaatcgg cacggcagcg attccggcgg 2041 aggatcacgg agcacctcgc ggcccagcga cgtggaaatc gtgcccaacg agttcgaggg 2101 ggagcacaat ggcggcgact atgccatcca cggtgatgac gaggacttcg aggatgagat 2161 tatcacgccc aaggcgctgc ccgtccagat ctatgagttg cccaagtaaa gggcgggatc 2221 atgacagctg ggttagtgtc agagtatata tatcgcgatg gtaaatgcga aaataacaca 2281 ggcggcactt tgagattgtt tttgggatcc ctcaatcggc cttcgagtct tgtatcagtc 2341 tatttccgaa gtaggagaca ttccaggccc ttcgacaatt agtctattgt cgctttatat 2401 tattttggca attaattagc agtatgtaca atattttttt gcaattgatc tgcgttagag 2461 gaacgaatgt gagagggagg cgagcgctaa aagcgttttt gtatagttct gggctaattt 2521 tgtaacgaat ttttctagtt tagttcttag tttttcatgt atgttttaag tttagcattg 2581 aacgaggcgg tgaaacgaag tatactacaa agtcaacatc aagagcagca gcagcagcga 2641 caacagcaaa tatataaaat ctaatcctaa agaacttatc agcgatttag acaaagcttg 2701 tagacatagc gagaaattgc agccaacaaa ttactacaaa tatttaaaga gtaaacgagt 2761 aagaataaag cattcccgta atattggatt tagaagcaaa atttcaaaaa atataaaaat 2821 atacgtatac tatgcacatt agcgctcatc agtgtttatg cttttttgag tctatccata 2881 tgagggagca taggaaaaca tatcggctaa atcggcgaat cgagcctaga gcgaccaaaa 2941 ttcaaacgca aaaatccctg gcatgatata tctatagaac gagtatatta cgaacagata 3001 ttgtattttt taatttacgg tattgatatt taatgtatct gtgtatatga acaacaaagc 3061 aatgagaacg gagcatccaa ttttataata gtttgttaaa ataaaaacaa aaatcttcca 3121 gaaaaat //