Dbfetch
LOCUS NM_001298802 2797 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster peste (pes), transcript variant G, mRNA. ACCESSION NM_001298802 VERSION NM_001298802.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2797) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2797) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2797) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2797) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2797) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2797) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2797) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2797) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2797) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2797) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2797) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2797) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2797) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2797) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2797) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2797) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2797) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2797) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2797) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2797) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 2797) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 2797) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 2797) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 2797) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 2797) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2797 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2797 /gene="pes" /locus_tag="Dmel_CG7228" /gene_synonym="CG7228; Dmel\CG7228; Pes; Peste" /note="peste" /map="28D3-28D3" /db_xref="FLYBASE:FBgn0031969" /db_xref="GeneID:34087" CDS 366..2033 /gene="pes" /locus_tag="Dmel_CG7228" /gene_synonym="CG7228; Dmel\CG7228; Pes; Peste" /note="CG7228 gene product from transcript CG7228-RG; CG7228-PG; pes-PG; peste" /codon_start=1 /product="peste, isoform G" /protein_id="NP_001285731.1" /db_xref="FLYBASE:FBpp0311175" /db_xref="GeneID:34087" /db_xref="FLYBASE:FBgn0031969" /translation="MTSRTRHCARLGIVLLGICCIASGIYLFRNWIDMFTRMRGQEMA LSPNSRSFEGWKVSPLPLDFDIYLFNWTNPDDFYVGSNKKPHFEQLGPYRFREKPDKV DIEWHNHNASVSFHKKSWFYFDAAGSNGSLWDKVTTVNSVAHSAARRAAVDWFARTGV NIANKLYRQGVTITKTVDEMLFKGYEHPFISVGKLLRPQDVPYKRIGYHYPRNGSSEF DGDINMFTGADDIAKMGQIHTWNNLTHTGAFEGTCGQVHGSMGEFFPPNLGTKDTVYM YMPKMCRAIPLDYVETVTVHGVTAYKFSGTRHAVDNGTLYPDTRCYCVGGKCMPSGVI NIGPCSFNASVYMSFPHFYMADPSYLEAIEGLRPEREKHEFFMALEPNAGVPMDVGGG FQANYYMEPIPGITLYENVPTVMIPMMWCEERVRVSEEIAADIALVPLIVLLGQIVTG ILLAGGLICTCWYPTRQVTHFCHSDPKAKASVLRPLNAFGVNSSAATAPVAQLFRNNI SSSGNERVGVRLLDYNRDSGIRLESGTMESSHRERLISEDSPDVVVR" ORIGIN 1 gtatattttg ttggcacatt gcactgtgtt gctggttatt tttaggctaa aagagcaaat 61 aaggcaagca tgatgagcaa acacatagaa aacattgtca acaggttgcg gaagtgacgc 121 tcaaggttca aggataaacc aagtgttaat atttcatgtt cgctagtgtg gaaaatcgca 181 attgttcgaa attcgcgtga ttgatgtatg aacaaatgat taggcgacgc caataacggg 241 aacgcagtcg atgcgagggt tccatgctca gtgcgcaaca agagatcgat cgaggaagac 301 gccctgcaaa caaagaacat caatttacag caccgccacc aagactcagg cgcagctcca 361 ccaagatgac atcacggacg cgccactgtg cccgactggg gatcgttctc cttgggatct 421 gttgcatcgc cagcggaatt tacctcttcc gcaactggat cgatatgttt acacgcatgc 481 gcggccagga aatggccctg agccccaatt cacgatcatt cgagggctgg aaggtgtcgc 541 cgctgccttt agacttcgat atatatctat ttaactggac caatccagat gacttctatg 601 tgggatcgaa caagaagcca cactttgagc aactgggacc ctatcggttt cgagagaaac 661 ccgataaggt ggacatcgaa tggcacaatc ataacgcctc cgtatcattt cacaaaaagt 721 cctggttcta ctttgatgct gccggcagca acggaagttt atgggataaa gtgactacgg 781 tcaacagcgt agcgcactct gctgctagac gtgcggccgt cgactggttt gccagaactg 841 gcgttaacat tgccaataaa ttatatagac agggagtgac cattacgaaa acagttgatg 901 aaatgctttt caagggctac gagcatccat tcataagcgt gggcaagctg ttgagacctc 961 aggatgttcc ctacaaacgt ataggctacc attacccacg aaatggcagt tccgagttcg 1021 atggtgatat caacatgttt acaggagctg atgatatcgc taaaatgggt cagattcata 1081 cgtggaataa tttgacgcat actggagcct ttgagggcac ctgcgggcag gtgcacggct 1141 cgatgggcga attctttccg cccaatcttg gcaccaaaga caccgtctac atgtacatgc 1201 ccaagatgtg tcgtgctata ccattggact acgtggaaac tgtgaccgtg cacggcgtga 1261 ccgcctacaa attcagtggc acccggcacg ctgtggacaa tggcactcta tatccggata 1321 cccgttgcta ttgcgtcgga ggaaagtgta tgcccagcgg tgtgatcaat atcggaccct 1381 gctcctttaa cgcatccgtc tacatgtcct ttccgcactt ttacatggcg gatccaagct 1441 atctggaggc catcgagggt ttgcgaccag aacgcgagaa gcacgagttc ttcatggccc 1501 tggagcccaa tgcgggcgtg ccaatggacg tgggtggtgg ctttcaggcc aactactaca 1561 tggagccaat tccgggtatt accttgtatg agaatgtccc gacggtcatg atacccatga 1621 tgtggtgcga ggagcgcgta cgcgtatcag aggaaattgc cgcagacatt gcgcttgttc 1681 cgctaattgt cctgctgggg cagatagtaa ccggcatcct tttggcgggc ggtcttatat 1741 gcacctgctg gtacccgacg cgacaagtga cgcacttttg tcacagcgat ccaaaggcga 1801 aggccagtgt cctgcgacca ctgaacgcct ttggtgtaaa ttcgtcggca gccacagcgc 1861 cggtggccca actattccgg aacaacatta gttcatcggg caacgagcgt gtgggagtgc 1921 gcctactgga ttataatcgc gattctggca taagactgga gagtggtacc atggaaagct 1981 cgcacaggga gcgtctgatc agcgaggact cgcccgatgt tgtagttaga taatacatgc 2041 gttggcatca agccattctg acggtgccgc caacgatcat ctgcctgaga ctcatttacg 2101 tcgccgtagc ttagaatagc ttagaacaac gtgatgaaac cattctgcct tagccaggct 2161 ctaagaggct ggaccaagtt gctcatcgag gatgtcgttc caattcacgt cacataccac 2221 cacattacct accacgcatg ccccaatcgc attaggagtt ccctcaacac atctgcacgc 2281 tttgcggaca gcgagagaga tttataagat tatttatttt agtgccaaat aacagcagaa 2341 aacgcaagca aaaagtcatt aactatttta gtaggataaa ctaaattgta tatagagcga 2401 ctcgcttaga gcgccccatt actcattttc cttaattctt gaagtttaaa ctgcgcatgc 2461 ccaaagtatt tatatttata taataatgca taacatttgt agagcgatat ttaagatttt 2521 aatgcagatt gatctgaagt tatatagaaa taatattgaa cagagaacat aggtagcgag 2581 aattgttgct catttacata ggtaggccga aaaactaaaa attatagttg ttgttttaag 2641 tcttgtacaa ataacgctag cactgcaaag attacgcata tcctatgtac aaatgtcgat 2701 cagtgtaaga tctaaatacc tagattataa agcacagctg tgaaccccgg aaatatttcc 2761 aaaaattcct taagataaat gaatagaaaa aattatt //