Dbfetch
LOCUS NM_001298774 3145 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster caper, transcript variant K (Caper), mRNA. ACCESSION NM_001298774 VERSION NM_001298774.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3145) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3145) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3145) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3145) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3145) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3145) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3145) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3145) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3145) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3145) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3145) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3145) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3145) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3145) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3145) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3145) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3145) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3145) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3145) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3145) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3145) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 3145) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3145) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 3145) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 3145) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3145 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3145 /gene="Caper" /locus_tag="Dmel_CG11266" /gene_synonym="CAPER; CC1.3; cg11266; CG11266; Dmel\CG11266; HCC1; igru" /map="27D5-27D5" /db_xref="FLYBASE:FBgn0031883" /db_xref="GeneID:33989" CDS 245..313 /gene="Caper" /locus_tag="Dmel_CG11266" /gene_synonym="CAPER; CC1.3; cg11266; CG11266; Dmel\CG11266; HCC1; igru" /note="CG11266 gene product from transcript CG11266-RK; CG11266-PK; Caper-PK; inselgruppe" /codon_start=1 /product="caper, isoform K" /protein_id="NP_001285703.1" /db_xref="FLYBASE:FBpp0311044" /db_xref="GeneID:33989" /db_xref="FLYBASE:FBgn0031883" /translation="MAEDFDVEAMLEAPYMKNIYSS" ORIGIN 1 tcgataagtt ctgtgacaac cctgaagccg aaaacaagca gccacgctag agaagaaaat 61 ctggttgaaa attggcaaaa attctaatta aaaaatcgca aaagccaaaa gagaagttcg 121 taagtcgtcc tacgaattcc gctgtgcgtc cccaccacat tttgatttct ccaaacgtgc 181 cagacaccga gcaggggact tttttcacgg agcaccccga attgcagcga agtaattttc 241 gaatatggcc gaggactttg atgtggaggc gatgctcgag gcgccgtaca tgaaaaacat 301 atactcctcc taacttgtct ggggcagcag gcagcactac tactactctc actcacagtc 361 agacaagaat gaaagtatcg ctcaaattac aaattacaga tttacgataa acagaaatcg 421 aaatataaga atatatgacc aacacataag cccaaaacgc aaagccaaag cctaaaacaa 481 accaaaccta tttgaacaaa caaaaaacac gacgtctttt tgagaaccaa tcaaccagtc 541 cactccacta gccagcgcta aacattcccc caaaactgat ctgattgaga atgagaatga 601 gcatgggaaa tttgcccatg tggagacaac atttctcgcc gtcgtgaacc atctatgcca 661 aaaatttaac taatttactt tgatttgctt tctcttattc aaaaaaaaaa aaaaaaaaaa 721 tatttacgaa actgaaaaaa taatatatca taacaaactc aatgatataa tcgaaaatca 781 accaacaacg acaacaacgt aacgaacgat caacgaccgt tatgtgttcc cacccaccaa 841 aaactgaaac caatcgacaa caaaaaaaaa aataatccac ttatctgtat ctacattatt 901 gcttgcgccc aaccaaccaa cccatatcct ccctgtccga tcccgcaccc aatccaccaa 961 acaaacaaaa caacctatct gtgtagaatg tcagtgcggg cagcggtgga agtggtggac 1021 gcaagcgcag cggcagcagt ccaggcggcg gcggtggaca cgatgacgac tacgccgaga 1081 atggtccgcg gaacggcagc ggcggcggaa gctcacacaa aaagcaaagc aaacgatccc 1141 ggagtagaag cggctcgcgt gatggcaaat ctcgacgaga tcgcggcaat gaacgcagca 1201 gtcatcggga caaggataag gagcgcgatc gtaaccgcga cggcggcgac cgagatcgac 1261 accgcaggga aggtggcgat cgagatcggg agcgggaacg tgagcgcgaa cgcgacagat 1321 ctcgtcggag tcgttcgcgt gatgagcgcg gtggaggtgg tcgctacggc gatcgtgaca 1381 aggatcgccg ctcgcgagat cgacgcggcg gcagcaagtc gttgcaagtg gatcgctcgc 1441 gggacaagcg tcgacgcagt cgttcccgcg atcagcagcg caaacggctg agtccgatcc 1501 gtgaacgcaa gcgcagccat tcccgctcga gggacagaaa tagccgccgt cggggaacca 1561 attctccgcg acgccgctca ccaccgaatg gagctgatcg caccacgccc accgaactca 1621 gtcccgagga gcgggacgcc cgcaccgttt tctgcatcca gttgtcgcag cgagtgcgag 1681 cccgtgacct ggaggagttt ttctccagcg tcggcaaggt gcgcgacgtg cgtctaatca 1741 catgcaacaa gacgaaacgc ttcaagggca ttgcctacat tgagttcgat gatcctgagt 1801 ccgtggcact ggccctgggc ctctctggcc agcggctgct cggtgtaccc atcatggtgc 1861 agcacacgca ggctgagaag aatcgtctcc agaatgcagc gccggcattc caaccgaaga 1921 gtcacacggg tcccatgcgc ctctacgtgg gatcactgca cttcaacatt accgaggaca 1981 tgctgcgggg catattcgag ccctttggca agatcgatgc cattcaactg atcatggata 2041 cggagacggg ccgatccaag ggctacggct ttatcacgta ccacaatgct gacgatgcca 2101 aaaaggctct ggaacagctg aacggctttg aactggccgg tcggctcatg aaagtgggca 2161 atgtgacgga gcgactggac atgaatacca cctcgctgga caccgacgag atggatcgca 2221 cgggcatcga tctgggtgcc acgggacgtc tgcagctgat gttcaagctg gcggaaggag 2281 ccggtttggc agtgccccag gcggctgcca atgcgctgct ggctacagca cctcaaccgg 2341 cgccgttgca gcagcaggag gtggcaccat cgatagccac acagtgcttc atactgtcca 2401 atatgtttga tccgcgtacc gagacaaatc ctacctggga cgttgagatc cgcgacgatg 2461 tgctggagga gtgcgccaaa cacggcgggg tgctgcacat ccacgtggac accatttcgc 2521 acacgggaac cgtgtatgtc aagtgcccga gcacaacgac cgcagtgctg gcagtgaatg 2581 cactgcatgg acgctggttt gccggtcgag tgatcacggc ggcctacgtg cccgtgatca 2641 actatcacac catgtttccg gactccatca acgccgtcga tctggtgacg tccacgcgca 2701 agaacaccga cgattgagct gaatgcgtgg gcaaaaatat tgttaatatt cgttacaaga 2761 actaattttt ggtcaaaaca ttttcaattt ttttaaagac tcgacgcaag ctgaaaatta 2821 ggggcacata ttaaaataca attaaataca tttataaata tatatgaatt tgaaaatttt 2881 aacatttctc gccttcaagt aattatgtcc gtgaactata ttaatgtgta gattgcctga 2941 aatgctgcaa gatcatgtta caaatggtta attacgtagt ttctagtgct taatttgtaa 3001 tttgctagtt tgaccgccaa aaatgtaagg acaccgaccg acctatcgat tgttggcttg 3061 cacggagctt gattttaaaa cattggacat tgtaacattt cccatacttg ttaagccgta 3121 gttttactat acagatattt tgtag //