Dbfetch
LOCUS NM_001298528 3429 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster ubiquilin, transcript variant B (Ubqn), mRNA. ACCESSION NM_001298528 VERSION NM_001298528.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3429) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3429) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3429) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3429) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3429) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3429) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3429) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3429) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3429) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3429) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3429) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3429) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3429) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3429) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3429) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3429) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3429) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3429) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3429) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3429) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3429) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3429) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3429) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3429 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3429 /gene="Ubqn" /locus_tag="Dmel_CG14224" /gene_synonym="anon-18DEa; BEST:LD26923; CG14224; Chap; clone 5.42; Dmel\CG14224; dsk2; Dsk2; DSK2; dUbqln; dUbqn; UBQLN; UBQLN homolog; UBQLN1; ubqn" /note="Ubiquilin" /map="18E1-18E1" /db_xref="FLYBASE:FBgn0031057" /db_xref="GeneID:32977" CDS 194..1837 /gene="Ubqn" /locus_tag="Dmel_CG14224" /gene_synonym="anon-18DEa; BEST:LD26923; CG14224; Chap; clone 5.42; Dmel\CG14224; dsk2; Dsk2; DSK2; dUbqln; dUbqn; UBQLN; UBQLN homolog; UBQLN1; ubqn" /note="CG14224 gene product from transcript CG14224-RB; CG14224-PB; Ubqn-PB; ubiquilin 1" /codon_start=1 /product="ubiquilin, isoform B" /protein_id="NP_001285457.1" /db_xref="FLYBASE:FBpp0309477" /db_xref="GeneID:32977" /db_xref="FLYBASE:FBgn0031057" /translation="MAEGGSKRINVVVKTPKDKKTVEVDEDSGIKDFKILVAQKFEAE PEQLVLIFAGKIMKDTDTLQMHNIKDNLTVHLVIKAPTRNNEQPARQPADVRQTPFGL NQFGGLAGMEALGAGSNTFMDLQARMQNELLNNGDMLRSLMDNPMVQQMMNNPDTMRQ LITSNPQMHDLMQRNPEISHMLNNPDLLRQTMELARNPSMLQELMRSHDRAMSNLESV PGGYSALQRIYRDIQEPMMNAATESFGRNPFAGLVDGGGSGAGNNPQQGTENRNPLPN PWGGANSGTNGTVGGSGAGNPTGDLPPNNVLNTPAMRSLLQQMADNPAMMQNLLNAPY TRSMMESMSQDPDMAARLLSSSPLMSNNPALQEQVRQMMPQFMAQMQNPEVMNMLTNP DAMNAILQIQQGMEQLRSAAPGLVGTLGIPPPPPGAGTGTNPASGDGSGGNSGASTNN VSPSSGLNAGTGTPNLAPGGGPNAQLFNDFMMRMLNGMSNNADNTQPPEVRYQSQLEQ LNAMGFVNRDANLQALIATFGDINAAVERLLSLNQLSLS" ORIGIN 1 catcgtgagt gtgtgtgtgt ccgtgtgagt gagaaagtga cgaattactt ttcatcaaat 61 gggaaataat ttagggtgaa aacacgtata tattcggaac acatttaaat tacagacgtg 121 ataacatctc gaaagaacca gctacatcgg tgcaaattaa gctaaacgag aacaccgcaa 181 atacaccatc gaaatggcgg aaggcggcag caagcgcatc aacgtggttg taaaaacgcc 241 aaaggacaag aaaacggtcg aagttgacga agattctgga ataaaagatt tcaaaattct 301 ggttgcacaa aagttcgagg cggagcccga gcagctcgtg ctcatttttg ccggcaaaat 361 tatgaaggac acggacaccc ttcagatgca caacatcaag gacaacctga cggtgcatct 421 ggtgattaag gcgccgacgc gcaacaacga gcagccggcc cgacagccgg ctgacgtgcg 481 ccaaacgccc tttggcctca atcaattcgg tggcctggcc ggaatggagg cacttggagc 541 cggatcgaac acgttcatgg atctgcaggc gcgcatgcag aacgagctgc tcaacaatgg 601 cgacatgctg cgctccctga tggacaaccc gatggtgcag cagatgatga ataatccgga 661 taccatgcgt cagcttatca cgtccaatcc gcaaatgcat gacctgatgc agcgcaaccc 721 cgagatctcg catatgctta acaatccgga cctgctgcgc cagacgatgg agctggcccg 781 caatccctcg atgttgcagg agctgatgcg ttcgcacgac cgcgccatgt cgaatctgga 841 gtcggtgccg ggcggctata gcgccctgca gcgcatctac cgcgatattc aggagccaat 901 gatgaacgcg gccacggaat cctttggtcg caaccccttt gccggcctgg tcgacggcgg 961 cggttcagga gccggcaaca acccgcagca gggcaccgag aaccgcaatc ccctgccgaa 1021 tccatggggc ggtgccaatt cgggaaccaa tggaacagtc ggtggctccg gcgccggcaa 1081 tccgacgggg gatctgccgc cgaacaatgt gctcaacacg ccggccatgc gaagcctgct 1141 ccagcagatg gccgacaatc cagccatgat gcagaacctg ctgaacgcgc cctacacgcg 1201 ttccatgatg gagtccatgt cacaggaccc ggacatggcc gcgcgcttgc tgagcagcag 1261 tccgctcatg tctaacaatc ccgccctgca ggagcaggtg cgtcagatga tgccgcagtt 1321 tatggcccaa atgcagaacc ccgaggtgat gaacatgctg accaatccgg atgcaatgaa 1381 cgctatcctg cagatccagc agggcatgga gcagctgcgc agcgcggccc caggtctcgt 1441 tggcaccctg ggcattccac cgccaccacc gggtgccggc accggaacga atccagccag 1501 cggcgatggg agcgggggca acagcggtgc cagcaccaac aatgtttcgc caagcagcgg 1561 cctcaacgcc ggcaccggca ctccaaacct ggccccgggc ggtggtccca acgcgcagct 1621 cttcaacgac ttcatgatgc gcatgctcaa cgggatgtcg aacaacgcgg acaacacaca 1681 gccgccggag gtgcgctacc agtcgcagct ggagcagctg aacgccatgg gctttgtcaa 1741 ccgtgatgcc aacttgcagg ctctgatcgc taccttcggg gacatcaatg cggcggtaga 1801 gcgactgctg tccctcaacc agttgtcctt gagttaacaa ggctaagcca tagccataac 1861 caaactgtac acaacctgtc tatatatcta cgaactacaa ctactatata taccactacg 1921 gccctggaga acgcgaatga gaacacgact agttaggagg acaggtccta aacccaaaca 1981 cacaccctcc gccaaaaaat tccacggtca gcgctgctga tcgcttgttt ccccatcaag 2041 ccggaaatgt caggaatcca tcatagccac atgccaacat accaacaccc ccaagacaca 2101 aaaagatggc tccaaacgag catagttgcc tcgagatcgg agagatacta gatataggtg 2161 ggtgatatga atgacgccgg tgagaatgtt agatagggat cgcataccaa agtgttagca 2221 ctttcgtagt tgatatcaga tttttttttt ttttaaataa tttacatttc gtgagctcgg 2281 agaatccttt aagcggaaat gcgttagccg aaaaccaact tgaatatgca tactttgctc 2341 acgtaatgca tagttttgca cgcccaacaa cttcaatcga aatacttaac gcatttcttt 2401 atcggagaac ttcgttaatt ttcaataaag ttaagcggga atgtgcactt ttgtcattga 2461 taatgtaata actattttgt cgccaacaga tgcgaattcc agttttgtgt ttaagaaaaa 2521 agaatcggta cagagatcag aggcgtagta tatatcctgt gttctggtca ggcagtttag 2581 ttttagtcgg gtgctagtgg gcgtgggcta tagccgcagt ccttctgact cccccccccc 2641 tccatttctc gcgatcggaa aacgttctgg aaattgcaaa caactgcaaa caggacaaac 2701 gtacagtaga tatcggctat atgcaaagac gacactgtct tgggggaatc ctaacatacg 2761 cgcgagtatg ctgtagtcaa tcaaaatgtt tatcgattcg ttaatataag agcaatctcc 2821 aagcgttatt tatcccacat cccgttcaga ggaatacaaa tgtaaaaagt tgttgcacac 2881 aagcgatttg catgctaacg atatctactg taagttaatg tgtgtatata ggtatatata 2941 tatgtatata catatatata tatatatcaa aatattccaa ggtgttaaca aaagacgtaa 3001 aactataaaa caaaaaaaaa aaaaaaaaaa aaaaaccaac tccttagtaa agagaggaag 3061 ccccaataat aacttgtaat gtaatttact ctaagctttc gtatataaaa cctataaccg 3121 accatttggg ttcccatttc cgatcaatca cacacacaca cactttcgaa aagctttcct 3181 tcgcgcgctc accgtttata taagatatgg attcagtgta taccctgtaa gtgctaccac 3241 cacatagcct cgctcgtccg ctgtgggatt ggctggtcgg ccggctggct ggctggccgg 3301 ctggctggct ggccgggttg ttggttggtc agttgggcta gtggactagt ggaactacgt 3361 ttatttgttt agtgaaggaa gtgaggcaaa gtaattaaat gtaaatgatc acatgtttga 3421 aaacgtaat //