Dbfetch
LOCUS NM_001298455 3297 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant D (CG8188), mRNA. ACCESSION NM_001298455 VERSION NM_001298455.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3297) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3297) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3297) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3297) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3297) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3297) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3297) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3297) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3297) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3297) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3297) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3297) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3297) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3297) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3297) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3297) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3297) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3297) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3297) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3297) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3297) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3297) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3297) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3297 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3297 /gene="CG8188" /locus_tag="Dmel_CG8188" /gene_synonym="Dmel\CG8188; Ubc; Ube2S" /map="16C1-16C1" /db_xref="FLYBASE:FBgn0030863" /db_xref="GeneID:32751" CDS 569..1198 /gene="CG8188" /locus_tag="Dmel_CG8188" /gene_synonym="Dmel\CG8188; Ubc; Ube2S" /EC_number="2.3.2.23" /note="CG8188 gene product from transcript CG8188-RD; CG8188-PD" /codon_start=1 /product="uncharacterized protein, isoform D" /protein_id="NP_001285384.1" /db_xref="FLYBASE:FBpp0312005" /db_xref="GeneID:32751" /db_xref="FLYBASE:FBgn0030863" /translation="MSSQYSNVENLSPQTIRQVMRELQEMETTPPEGIKVLINESDVT DIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTL KKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQ PAKCGVGAVGDAKDDGGPSTKKHAGLDKKLQDKKKEKLLKEKKRMLKRL" ORIGIN 1 cgagggttac tgtaaaatga aactgttttt gtgtgttgtt gtcgagcgtg aagtgtccaa 61 ttagacaact gaatttgttt agatgtgaac gccagagtcg agataggtca cacagcagct 121 acgacaaagt tgagcgaatc gatttcaaaa caaaagcaac caacgaaaca aaattttaag 181 tcgctagaaa aactaaaaat caagattttc gagaggaggt gctataccaa atacatatat 241 atatatagtc tttaaacgag tgcgtgtgaa aacataaacc caaacaacag acaaggagac 301 tagcggggcc aaaggaagca taaggagtct acacgcaaag gaatagttaa agccagccca 361 caacgcacat attcatatat tttgggacca cttttccaag gcagctggga aaaggcggtg 421 aaattgcgac tatccgagag ccgaagagct cagctgcagg aataagctga cgaaactgaa 481 accttgagac agcgattcgc acgcacacca gcgcaggccc gcatcaacac agacacacac 541 acgcacagca gcaggaaatt cagacatcat gagttcgcaa tactcgaatg tggagaacct 601 gtcgccgcag acgataaggc aggtgatgag ggagctgcag gagatggaaa ccacgccacc 661 ggaaggcatc aaggtgctaa tcaatgagag cgatgtgacg gatattcagg cattgatcga 721 tggacctgct ggcactccgt acgccgctgg aattttccgc gtcaaactga cgctgaacaa 781 ggacttcccg ctgacgccac ccaaggcgta cttcctcacc aagatctttc atccgaatgt 841 ggccgccaac ggggagatct gtgtgaacac actaaagaag gactggaagc cggatctggg 901 catcaagcac attctgctca ccatcaaatg cctgcttatt gtcccgaatc cggaatcggc 961 gctgaacgag gaggccggca agatgctgtt ggaacgatac gatgactact cacagagggc 1021 gcgcatgatg acagagatcc atgcccagcc tgccaaatgc ggtgtaggcg ctgttggcga 1081 tgccaaagac gatggtggac cctcgacgaa gaagcatgcg ggcctggaca agaagctgca 1141 ggacaagaag aaggagaagt tgctcaagga gaagaaacgc atgctgaaga gattatgaga 1201 ggcataaggc ggagttccat ggactagcta atcaaccagg agcagtaagt agtaagcagt 1261 agcagaacac gtcggatacg tatgaatgga tagatgttaa agaatggatg agtgcgagcg 1321 taaaccctac aaacaggtga aaggcgacag gatcaaagct agcaaggtcg aatcaaagga 1381 ggaggcgcgc tatgaaattt tacactgatc tgataaaaaa caaaacagac aaaaaaacaa 1441 gtaaattgag ctactgaaat tacgaagtaa ccgatgaaac ccgaaccctg gaggccaata 1501 tcggaacgga acggaagtta aagctgcaac aatttcggta aaacgagaga gataaagaac 1561 cactccaaag aacagtgcat ccagttacca tatacgatta ttttaaccaa catttttggt 1621 ggcacgccgc tttcaactga gcctagaata tagaaaacaa aaaccaacat aaagcaacca 1681 agagaaatgg ggattgcaac catcacccaa ttaatttatg tagttctctt ttcttaacgc 1741 tcatgggcta tcctagcata atttatgtaa ttagattaaa caaaacaagg ataacattat 1801 cgcctcatac atgccacctc ttaaacaccc agaactctct agaaagcatc accttacaca 1861 taccttaatg agcactataa tcgctcattt ggggtgagtc cgcgtattgg acccccgttc 1921 ataaacataa acttacccct tagatttctt tttttttttt gtgtgttttt aaaattgtat 1981 tcgcttagtt cataaataaa taaaatttcg attcgttaca ttcaattgtc ctgcttaggc 2041 ataagataca caaaggacac acacaccacc catgcatcca acccacacaa atcacgaaaa 2101 atacataaaa ttattaaaga aatactgtaa aagattgatt gcacattctg tagagattta 2161 gttttaagtg cttccaaatt gtcaaaccct cgacgcgaat cggatcggaa tggaatggcc 2221 tggagcggat tggaaagcaa tggcacggtg ataagtgcat gggatatccg tatcctcgtc 2281 ctttcgcttg ctatgtcgcc ggtattctac acgcccgctg ctctctcgct ctctctccct 2341 cctttcgttc gaacatcctt ttgaagctca cacaacaaac acacacaaaa cgagggcaaa 2401 gagtaaaaag caataaaaaa gaataaaatt ccagaaaatt acaaaaaatt cagatacttg 2461 tgcgtagagg gagtttgaaa aggtgttttt gaaattggtt ttaggtaagt aatatacata 2521 tgtatgtatg tatgtagttt taaagtaaaa aactacactt tacatgcatt tcattagaat 2581 tcgaatattc aatacagatc attcaatttt taccgtgcac agtagtttag ttttccagat 2641 cacgtcgcgc gtgccaataa caataacatt tcctagttcc gcttcgttcc atacaattcc 2701 actcaacctc cccccatccc ttacagttta tttatttatt ttgcccactg tccaccggaa 2761 gagtttattt gtgttttggg gagtttctcg attcccgcga ttctgcgaaa tatcatgaga 2821 cactcgcaaa actaacaccg ataaactaac attctcattt gagagtaggt gtgtgcggct 2881 ctgcccctct cgctcccacc gcctctagct ggctttgtct aaccgccaac gctttcgaga 2941 cgggccaaca ttccaatccg atcggatcgg atcgggtcta accttcagtc aacttgtcgc 3001 tcgaaccaaa tattgtcgca cagcagagag tcagaatctc gcagggacgg cgaatcagaa 3061 atacccttta atgagtagtt ggctgctcgc acgtgcaagg atccataaat taaaaaaata 3121 tacttcaggg tttgaatata catttttagg atatttttgt gtttaagaaa cggacaaaca 3181 ttaaacattc atatacattt tttaacttta aacatttaat ggttttcttt aaaccttaaa 3241 caaattacaa gtaaattcca ataaacaagt taccaatctt aaaaacgatt agattct //