Dbfetch
LOCUS NM_001276742 6747 bp mRNA linear INV 22-NOV-2023
DEFINITION Caenorhabditis elegans protein-tyrosine-phosphatase (ptp-3),
partial mRNA.
ACCESSION NM_001276742
VERSION NM_001276742.3
DBLINK BioProject: PRJNA158
KEYWORDS RefSeq.
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 6747)
AUTHORS Sulson,J.E. and Waterston,R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282 (5396), 2012-2018 (1998)
PUBMED 9851916
REMARK Erratum:[Science 1999 Jan 1;283(5398):35]
REFERENCE 2 (bases 1 to 6747)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 6747)
AUTHORS WormBase.
CONSRTM WormBase Consortium
TITLE Direct Submission
JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics
Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org
REFERENCE 4 (bases 1 to 6747)
AUTHORS Sulson,J.E. and Waterston,R.
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger
Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute
at Washington University, St. Louis, MO 63110, USA
COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This
record is derived from an annotated genomic sequence (NC_003280).
On Apr 15, 2020 this sequence version replaced NM_001276742.2.
COMPLETENESS: incomplete on both ends.
FEATURES Location/Qualifiers
source 1..6747
/organism="Caenorhabditis elegans"
/mol_type="mRNA"
/strain="Bristol N2"
/db_xref="taxon:6239"
/chromosome="II"
gene <1..>6747
/gene="ptp-3"
/locus_tag="CELE_C09D8.1"
/db_xref="GeneID:174685"
/db_xref="WormBase:WBGene00004215"
CDS 1..6747
/gene="ptp-3"
/locus_tag="CELE_C09D8.1"
/standard_name="C09D8.1j"
/note="Confirmed by transcript evidence"
/codon_start=1
/product="protein-tyrosine-phosphatase"
/protein_id="NP_001263671.1"
/db_xref="EnsemblGenomes-Gn:WBGene00004215"
/db_xref="EnsemblGenomes-Tr:C09D8.1j"
/db_xref="GeneID:174685"
/db_xref="GOA:L8E6H9"
/db_xref="InterPro:IPR000242"
/db_xref="InterPro:IPR000387"
/db_xref="InterPro:IPR003595"
/db_xref="InterPro:IPR003598"
/db_xref="InterPro:IPR003599"
/db_xref="InterPro:IPR003961"
/db_xref="InterPro:IPR007110"
/db_xref="InterPro:IPR013098"
/db_xref="InterPro:IPR013783"
/db_xref="InterPro:IPR016130"
/db_xref="InterPro:IPR029021"
/db_xref="InterPro:IPR036116"
/db_xref="InterPro:IPR036179"
/db_xref="UniProtKB/TrEMBL:L8E6H9"
/db_xref="WormBase:WBGene00004215"
/translation="MNRIARHLRNVARRKGSSLLLFLMLSTVLVAAKEDGKLGEEDED
FGWNDEEPPDNQDVQDGGIPLVRKEEFTNNQLYAEAYQSYIQALAYPARLVVRPDSST
VVDESKISFFCRADGNPLPSVIWRVNGKSITDHNRISIKSLATGLSTLRFERVSLDDN
ATVVSCSADNGVANPVVAEASLTVVPRDKVPIGFPQIELHPSLKSVEQGKTAYVSCRV
RGDPRAKVLWLRDLIPLDIRADGRYSVSTIGNPGALMIQHAREEDQGKYECIARNTLG
VAHSKAANLYVKVRRVPPYFSYKLERQYVVGVGGNINLTCVAVGYPMPRVFWKKTDLM
VLDDPSTAPIGKNVLTLTHVESTENFTCVAVSALGNIEATTTVIAKELPPPPVNIVVS
SVTSESVVITWKPPKYNEAINKYVVNYRLKSENKDDAALFAKDSRAEDESDSERYSEG
RSSRGKTMETLENSLVIDGLVAFQTYEFTVRSAGPVGVGLESLPVEAQTKPSKPATAP
VSPQARSLNRDSILVKWGPCEQPNGLITGYKVYYTNDLVTTPIREWKQHDAKSDEFMT
TINGLEPDSRYFVRVIAQNSEGDSPLSTLVTVATRQGIPGQPPMLTVKALDSRRMQLT
WDKPLYSSPVVGYTVRYNTSDGEKELTLTSPHEKHVVTGLHPDKYYYFRVAAYSDRGQ
GEFTEPMISKTIASIPLSSPTIVSAAATSSKSVEIRWKGPEQKKLNGVLTAYRINYFR
LEDSKTANLESVEYDEDMDDSSSFLDRMSVVVPSDATSYVLSDLLPYSSYEITVAAST
MDGYGPESSIRVVKTLEDVPSAPRNFNAELTSATSVKLTWDAPAAANGALLGYYVYLD
RMVNGEPVVEKGSKKRIVMIRDSSKRYFELDSLDPNTEYSFRLNAFNRNGDGEFSERK
SIITQGIPPEAPEIVSVSLDRDEPPVVARIEWKMPKMKPNETPIEKYNLWLRAQGYPD
SYVKAKTVDGTDLSTTISGLWMGVVYDVLLAAENREGRSQNATETIATPVGSPDGEPI
DVQYEVMKGKIVVSWRPPSEEKRNGNITSYKAILSAMDATADRYEQPVPAPSTSSTFE
VNVRRAYLFKVAAATMKGIGPYSPVLTINPDPAALVGPPTNVRVEATSNSTAVVQWDF
ESQKADSFVVKYMHEPGNRMDTEKWKQLPVVSIDKENPKRFAVVSDLNAHKPYAFCVL
AVKNNRQGPCSDPPTVLESVTPTYMVQNLRVLWKTSNSVQLTWEYNGPRNVGFYVNHT
GRKDYVNHELQEKTMSTPGFGQDVDEKHREYLWTNLRPHMMYTIHVGVRTLPPGARKY
WPQEVVTITDPTGPPFVDVPKLVDSSGTQPGQQMIRLTPATEEYGPISHYWIILVPAN
YSTEDVVNLDPIELEKATAEKRAQLARSLSVSPSKKLKRKASEVGDDSQSASYHPKEK
RARRATVPGAYVTARLSADRVKQQYRNNQPFIVGDSQLYDGFTNYPLEHNLHYRLMMR
AFAKNDVRTKDSFEQRAPMSEKLSRMYSDSVLTEPFTIKSALRGASQKSSPWVGACIA
FLVLFSIVGMLICWWLRCNKKSAGRHPRHGSITKVALTGNIMNGGGGIPGETSKLLST
SNEYGRQIMNPYEQMNGNHHMESSMDLYPLPTSHSRSNGYAPVPVAIPSLPNNGNNMT
TVSHPAVPIAELANHIERLRMNNNAGFQSEFESIETGQHFTWEHSSADMNKHKNRYAN
VAAYDHSRVVLSNVEGYPGMDYINANYVDGYDKPRSYIATQGPLPETFSDFWRMVWEE
QSVTIVMLTNLEERSRVKCDQYWPSRGTATYGDIEVTLLESVHLAHYTMRTMRLKMVG
EPEVREIKHLQYTAWPDHGVPDHPTPFLIFLKRVKTLNPNDAGPIISHCSAGIGRTGA
FIVIDCMLERLRYDNTVDIYGCVTALRAQRSYMVQTEEQYIFIHDAVLDAVNSGSTEV
PASRLHQHLHILSQPSADQLSGIDMEFRHLTTLKWTSNRCTVANLPVNRPKNRMLSAV
PYDSNRVIMRLLPGADGSDYINASWIDGYKERGAYIATQAPTNETAADFWRAIWEHNS
PIIAMLVRTNERGQEQCSDYWPLETGVQVGMLVVEPMAEYDMKHYHLREFRISDINTR
EVRTVRQFHFMEWPDVGKPHTADHFLDFVTQVHNTYAQFGCTGPITVHCCSGAGRTAV
FIALSIILDRMRAEHVVDVFTTVKLLRTERQNMIQEPEQYHFLYLAAYEYLAAYDNFS
"
ORIGIN
1 atgaatcgga tagcgcgtca cttacgaaat gtggcacgcc gaaaaggctc gtcgctgctt
61 ctgtttctaa tgctaagtac cgtactggtc gcggcaaaag aggacggtaa gttgggggaa
121 gaggatgagg atttcgggtg gaatgatgaa gagccacctg ataatcagga tgtgcaggac
181 gggggaattc cgttggttcg gaaggaagag tttacaaata atcagcttta tgctgaagct
241 tatcagagtt atattcaagc tcttgcgtac cccgcccgac tagtcgtccg tccagactca
301 tcaaccgtcg tcgatgaatc gaaaatctca tttttctgtc gagcagatgg aaatccgttg
361 cctagtgtga tttggagagt caatggaaaa tccataacag atcataatcg aatatcaata
421 aaatccttgg ccaccggctt atcgactctc cgtttcgaac gtgtctctct ggatgacaat
481 gcgactgttg tgtcctgctc ggctgataat ggagttgcca atccagttgt cgcagaagca
541 tcactaaccg ttgtcccacg agacaaagtt ccgattgggt tccctcaaat tgaacttcat
601 ccatcattga agtcggtcga acaggggaaa actgcttatg tctcttgtcg ggtccgagga
661 gatcctcgag caaaagtcct ttggctccgt gacctgatcc cgctagacat tcgtgcagat
721 ggtagatact ctgtaagtac aatcggaaac cctggagccc tgatgattca gcatgctcga
781 gaagaagatc agggaaaata cgaatgcatt gcaaggaata cattaggagt tgctcactcg
841 aaagccgcaa atctttatgt taaagttcgc cgagttcctc cctacttctc ttacaaattg
901 gaacgtcaat atgttgttgg cgtcggcggg aatatcaact tgacatgcgt tgccgtgggt
961 tatccaatgc cacgtgtctt ctggaaaaag accgatttga tggtacttga cgatccttct
1021 actgctccaa ttggcaaaaa tgtgctcaca ctgacacacg tggaatcgac tgaaaacttc
1081 acctgtgttg ctgtcagtgc tctcggaaac attgaggcaa caacgacagt catagctaaa
1141 gaacttcctc cgccaccagt caacattgtt gtctcatcag taacttctga atctgtagtg
1201 attacctgga agccaccgaa atacaatgaa gctatcaata aatacgtggt taattatagg
1261 ctcaaatctg aaaacaaaga tgatgctgca ttgtttgcga aggatagtag agctgaagat
1321 gaaagtgaca gtgaaagata ttccgaaggt agatcatcgc gtggtaaaac catggagaca
1381 ctagagaata gcctggttat agacggtctt gttgcgtttc agacatacga attcacagtt
1441 cgaagtgccg gtccagttgg cgttggttta gagtcattac cagttgaggc ccaaacaaaa
1501 ccaagtaaac cagcaacagc tcccgtcagt ccacaagcca gaagtctgaa tcgcgattcg
1561 attctggtga aatggggtcc atgtgagcaa ccaaacgggc tcataacagg atataaagtg
1621 tattacacaa atgatctggt tacaactccg attcgagaat ggaaacaaca cgacgcgaaa
1681 tcagacgaat tcatgaccac catcaatggc ctcgaacctg attcaagata tttcgtacga
1741 gtgattgctc aaaactctga aggcgattcc ccattatcca cattggttac ggtagcaacc
1801 cgtcaaggaa tccctggcca acctccaatg ttgacggtta aagcgctcga ctcgaggcga
1861 atgcaattga catgggacaa acctctttac tcgtctccag ttgttggata cactgtccga
1921 tataacactt cggatggaga aaaggagctg acattgacat ctcctcatga aaagcatgtg
1981 gtgactggat tgcatccgga taagtattat tactttagag ttgctgctta ctcggataga
2041 ggacagggag agttcactga accaatgatt tccaaaacga ttgcatcgat acctctatcc
2101 tctccaacaa ttgtgtctgc ggcggcaacg tcctcgaaaa gtgtggaaat ccgatggaag
2161 ggtcccgaac agaaaaagtt gaacggcgtc ttgacggctt atcggattaa ctactttcgt
2221 ctcgaggact ctaaaactgc aaatttggaa tcggttgagt acgacgagga tatggacgat
2281 tcctcttcat ttcttgatcg aatgtctgtt gtggtgccta gtgatgcgac ctcttatgtt
2341 ctatccgatc ttctaccgta ctcatcctac gagattactg tcgcagcgtc gacaatggat
2401 ggatacggcc cggaaagctc gattcgtgtt gtgaaaactc ttgaggatgt accatcagcg
2461 cctcgaaact tcaatgcaga gctgaccagt gccacatcgg tcaaactgac atgggatgct
2521 ccagcagcgg ccaacggagc ccttctcggc tactacgtgt acctggatcg aatggtgaac
2581 ggagaaccgg tcgttgaaaa gggcagcaag aagcgaatag taatgattcg agattcttcg
2641 aaacgatact ttgagctgga tagtctcgac ccgaacaccg agtactcgtt ccgattgaac
2701 gcattcaaca gaaacgggga tggagagttt tcggagcgga aaagcatcat cacacaggga
2761 attccccccg aagcgcccga gatcgtgtct gtatcactgg atcgcgacga gccacccgtc
2821 gtagccagaa ttgagtggaa gatgccgaaa atgaagccga acgagacacc gatagaaaag
2881 tacaatctat ggttacgcgc acaaggatat ccggactcat atgtcaaggc gaagacagtc
2941 gacggaaccg atctatcaac tactatttct ggtctttgga tgggagtagt gtatgatgtt
3001 ctgcttgccg ctgaaaatcg agaaggacga tcccaaaatg ccacagaaac catcgcaacg
3061 ccggttggaa gtcccgatgg tgaaccgatt gatgttcagt acgaagtgat gaaaggaaag
3121 atcgtcgttt catggaggcc cccatctgag gagaagagaa atggtaacat cacaagttac
3181 aaggccattt tgtcggcgat ggatgctact gcggatcgat atgagcaacc ggtgcctgct
3241 ccttccacat catcgacatt cgaggtgaac gtacgcagag cctacctgtt caaagtagcg
3301 gccgccacaa tgaagggtat cggaccctac tcgccagtgc tcacaatcaa ccccgatcca
3361 gctgcacttg tcggacctcc taccaatgtt cgcgttgaag ccacaagcaa ttcgacagca
3421 gttgtgcaat gggatttcga atcacagaag gctgactcat ttgttgtcaa gtacatgcac
3481 gagcctggaa accgaatgga cacagaaaag tggaagcagt tgcccgttgt gagcatagat
3541 aaagagaacc caaaacgatt tgcagtggtc tccgacttga acgcgcataa gccatacgca
3601 ttttgtgtgt tggccgttaa gaataatcga caagggcctt gctctgatcc tccgactgtc
3661 cttgagagtg tcacgccgac gtatatggtt caaaacctga gggttctgtg gaagactagc
3721 aactctgtgc agctcacgtg ggagtataat ggtccgcgaa acgtcggatt ctatgttaat
3781 cacactggac ggaaggatta tgtgaatcat gagctccagg agaaaacgat gtcgacacca
3841 ggatttggtc aagatgttga tgagaagcat cgtgaatatt tgtggacgaa tcttcggcct
3901 catatgatgt acacgataca tgttggagta agaacgcttc cacctggagc cagaaagtat
3961 tggcctcaag aagtggttac aatcactgat ccaactggac caccttttgt cgatgttcct
4021 aaattggttg attcctccgg aactcaacca ggacagcaga tgatcagatt gacacctgct
4081 acggaagagt atggacctat ttctcattat tggattatac ttgttccagc gaattatagc
4141 acggaagatg tcgtaaacct ggatccaatt gaattggaaa aagctacggc tgaaaagcgc
4201 gcccagcttg ccagatcctt gagcgtgtct ccatcgaaaa agttgaaacg aaaagcttcg
4261 gaagttggag atgattcgca aagcgcatct taccatccga aggagaagcg agctcgtcga
4321 gcaaccgtgc caggagcata tgtgactgca aggttgagtg ctgatcgagt caagcaacaa
4381 tacaggaata atcaaccatt tattgtggga gattcacagt tgtatgacgg gttcaccaac
4441 tacccactcg agcacaacct tcactaccga ctgatgatgc gggcgtttgc gaaaaatgat
4501 gtgcgaacca aggacagttt cgaacaacgt gcaccaatga gcgagaagct gtcccgtatg
4561 tactctgatt ctgttctaac tgagccattc acaatcaaat cggctcttcg cggagcttcg
4621 cagaagtcgt ctccttgggt tggagcgtgc atcgccttct tggtcttgtt ctcgattgtt
4681 ggaatgctga tatgttggtg gttgcgttgc aataagaagt ctgctggacg gcatccacga
4741 catggttcta tcacaaaggt tgcgttgact ggaaatatta tgaatggagg tggtggaata
4801 cctggagaaa caagcaagtt attatcgact tccaatgaat acggacgaca gattatgaac
4861 ccctatgagc agatgaatgg aaatcatcat atggaatcat cgatggatct ttatcctttg
4921 ccaacaagtc actctagatc taatggatat gcacctgttc ctgtcgcaat accatctctt
4981 ccaaataatg gaaacaatat gactacagta tcccatccag ctgttccgat agctgaactt
5041 gcgaatcata tcgagaggct tcgaatgaac aataatgcag gattccagtc agaatttgaa
5101 tctattgaaa ctggacaaca cttcacttgg gaacactcgt ctgctgatat gaataagcat
5161 aagaatcgat acgcgaatgt ggctgcctat gatcattcca gagttgtact ttccaatgtt
5221 gaaggatatc caggaatgga ttacatcaac gcaaattatg tggatggata tgacaaacca
5281 agaagctaca ttgccaccca gggaccactc ccggaaacat tttcggattt ctggagaatg
5341 gtttgggagg agcaatcggt tacaattgtg atgttaacaa atctggagga acgaagtcga
5401 gtgaaatgtg atcaatactg gccgagtcgg ggaactgcca catatggaga tatcgaggtg
5461 acactgttgg aaagcgttca tttggctcat tatacgatga gaacgatgcg attgaaaatg
5521 gttggagaac ctgaagttcg agagatcaag catctacagt atactgcatg gccggatcat
5581 ggagttcccg atcatccgac accgtttttg atcttcctga agagggtgaa aacgctgaat
5641 ccaaacgatg caggaccaat catatcgcat tgtagtgctg gaattggaag aactggagcc
5701 ttcattgtga ttgattgtat gctggaacgt ctccgctacg acaatacagt tgatatctat
5761 ggatgtgtta ctgcgttgag agcacagagg agttatatgg tacaaactga agagcaatac
5821 atctttattc atgacgctgt ccttgatgcg gtgaacagtg gatccacaga ggttcctgcc
5881 agtcggttgc atcaacattt gcacattctt tcacaaccat cagctgatca attgtctgga
5941 attgatatgg aattcaggca tttgacgaca ctgaaatgga ccagcaatcg gtgtactgtt
6001 gcgaatcttc cggtaaatcg accaaagaac cggatgctca gcgcagtacc gtatgattcg
6061 aatcgagtaa taatgagatt gcttcctgga gctgacggat ccgattacat caacgcatca
6121 tggattgacg gttacaaaga gcgcggagcc tacattgcca ctcaagcacc aactaacgag
6181 acagccgcag atttttggcg agcaatttgg gagcataaca gcccgataat cgccatgctg
6241 gtacggacaa acgaacgagg acaagagcaa tgtagtgact attggccatt ggaaactgga
6301 gttcaagttg gaatgctcgt cgttgagccg atggctgaat atgatatgaa acattatcat
6361 cttcgagagt ttaggatttc ggatattaat actcgcgaag tccgaaccgt tcgtcaattc
6421 catttcatgg agtggcctga tgtcggaaag ccgcacacag cagatcactt cctcgacttt
6481 gtcacccaag ttcacaatac gtatgctcaa ttcggatgta ctggcccgat tacagtacac
6541 tgttgctctg gagccggacg cactgcagtc ttcatcgcac tttcgatcat tttggatagg
6601 atgcgtgctg agcatgttgt tgatgttttc acaacggtta aactgctccg aacagaacgt
6661 caaaacatga ttcaagagcc agagcagtat cacttcctgt atctagctgc atatgagtac
6721 ctagccgcct atgacaattt ctcgtag
//