Dbfetch
LOCUS NM_001276742 6747 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans protein-tyrosine-phosphatase (ptp-3), partial mRNA. ACCESSION NM_001276742 VERSION NM_001276742.3 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 6747) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 6747) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 6747) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 6747) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003280). On Apr 15, 2020 this sequence version replaced NM_001276742.2. COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..6747 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="II" gene <1..>6747 /gene="ptp-3" /locus_tag="CELE_C09D8.1" /db_xref="GeneID:174685" /db_xref="WormBase:WBGene00004215" CDS 1..6747 /gene="ptp-3" /locus_tag="CELE_C09D8.1" /standard_name="C09D8.1j" /note="Confirmed by transcript evidence" /codon_start=1 /product="protein-tyrosine-phosphatase" /protein_id="NP_001263671.1" /db_xref="EnsemblGenomes-Gn:WBGene00004215" /db_xref="EnsemblGenomes-Tr:C09D8.1j" /db_xref="GeneID:174685" /db_xref="GOA:L8E6H9" /db_xref="InterPro:IPR000242" /db_xref="InterPro:IPR000387" /db_xref="InterPro:IPR003595" /db_xref="InterPro:IPR003598" /db_xref="InterPro:IPR003599" /db_xref="InterPro:IPR003961" /db_xref="InterPro:IPR007110" /db_xref="InterPro:IPR013098" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR016130" /db_xref="InterPro:IPR029021" /db_xref="InterPro:IPR036116" /db_xref="InterPro:IPR036179" /db_xref="UniProtKB/TrEMBL:L8E6H9" /db_xref="WormBase:WBGene00004215" /translation="MNRIARHLRNVARRKGSSLLLFLMLSTVLVAAKEDGKLGEEDED FGWNDEEPPDNQDVQDGGIPLVRKEEFTNNQLYAEAYQSYIQALAYPARLVVRPDSST VVDESKISFFCRADGNPLPSVIWRVNGKSITDHNRISIKSLATGLSTLRFERVSLDDN ATVVSCSADNGVANPVVAEASLTVVPRDKVPIGFPQIELHPSLKSVEQGKTAYVSCRV RGDPRAKVLWLRDLIPLDIRADGRYSVSTIGNPGALMIQHAREEDQGKYECIARNTLG VAHSKAANLYVKVRRVPPYFSYKLERQYVVGVGGNINLTCVAVGYPMPRVFWKKTDLM VLDDPSTAPIGKNVLTLTHVESTENFTCVAVSALGNIEATTTVIAKELPPPPVNIVVS SVTSESVVITWKPPKYNEAINKYVVNYRLKSENKDDAALFAKDSRAEDESDSERYSEG RSSRGKTMETLENSLVIDGLVAFQTYEFTVRSAGPVGVGLESLPVEAQTKPSKPATAP VSPQARSLNRDSILVKWGPCEQPNGLITGYKVYYTNDLVTTPIREWKQHDAKSDEFMT TINGLEPDSRYFVRVIAQNSEGDSPLSTLVTVATRQGIPGQPPMLTVKALDSRRMQLT WDKPLYSSPVVGYTVRYNTSDGEKELTLTSPHEKHVVTGLHPDKYYYFRVAAYSDRGQ GEFTEPMISKTIASIPLSSPTIVSAAATSSKSVEIRWKGPEQKKLNGVLTAYRINYFR LEDSKTANLESVEYDEDMDDSSSFLDRMSVVVPSDATSYVLSDLLPYSSYEITVAAST MDGYGPESSIRVVKTLEDVPSAPRNFNAELTSATSVKLTWDAPAAANGALLGYYVYLD RMVNGEPVVEKGSKKRIVMIRDSSKRYFELDSLDPNTEYSFRLNAFNRNGDGEFSERK SIITQGIPPEAPEIVSVSLDRDEPPVVARIEWKMPKMKPNETPIEKYNLWLRAQGYPD SYVKAKTVDGTDLSTTISGLWMGVVYDVLLAAENREGRSQNATETIATPVGSPDGEPI DVQYEVMKGKIVVSWRPPSEEKRNGNITSYKAILSAMDATADRYEQPVPAPSTSSTFE VNVRRAYLFKVAAATMKGIGPYSPVLTINPDPAALVGPPTNVRVEATSNSTAVVQWDF ESQKADSFVVKYMHEPGNRMDTEKWKQLPVVSIDKENPKRFAVVSDLNAHKPYAFCVL AVKNNRQGPCSDPPTVLESVTPTYMVQNLRVLWKTSNSVQLTWEYNGPRNVGFYVNHT GRKDYVNHELQEKTMSTPGFGQDVDEKHREYLWTNLRPHMMYTIHVGVRTLPPGARKY WPQEVVTITDPTGPPFVDVPKLVDSSGTQPGQQMIRLTPATEEYGPISHYWIILVPAN YSTEDVVNLDPIELEKATAEKRAQLARSLSVSPSKKLKRKASEVGDDSQSASYHPKEK RARRATVPGAYVTARLSADRVKQQYRNNQPFIVGDSQLYDGFTNYPLEHNLHYRLMMR AFAKNDVRTKDSFEQRAPMSEKLSRMYSDSVLTEPFTIKSALRGASQKSSPWVGACIA FLVLFSIVGMLICWWLRCNKKSAGRHPRHGSITKVALTGNIMNGGGGIPGETSKLLST SNEYGRQIMNPYEQMNGNHHMESSMDLYPLPTSHSRSNGYAPVPVAIPSLPNNGNNMT TVSHPAVPIAELANHIERLRMNNNAGFQSEFESIETGQHFTWEHSSADMNKHKNRYAN VAAYDHSRVVLSNVEGYPGMDYINANYVDGYDKPRSYIATQGPLPETFSDFWRMVWEE QSVTIVMLTNLEERSRVKCDQYWPSRGTATYGDIEVTLLESVHLAHYTMRTMRLKMVG EPEVREIKHLQYTAWPDHGVPDHPTPFLIFLKRVKTLNPNDAGPIISHCSAGIGRTGA FIVIDCMLERLRYDNTVDIYGCVTALRAQRSYMVQTEEQYIFIHDAVLDAVNSGSTEV PASRLHQHLHILSQPSADQLSGIDMEFRHLTTLKWTSNRCTVANLPVNRPKNRMLSAV PYDSNRVIMRLLPGADGSDYINASWIDGYKERGAYIATQAPTNETAADFWRAIWEHNS PIIAMLVRTNERGQEQCSDYWPLETGVQVGMLVVEPMAEYDMKHYHLREFRISDINTR EVRTVRQFHFMEWPDVGKPHTADHFLDFVTQVHNTYAQFGCTGPITVHCCSGAGRTAV FIALSIILDRMRAEHVVDVFTTVKLLRTERQNMIQEPEQYHFLYLAAYEYLAAYDNFS " ORIGIN 1 atgaatcgga tagcgcgtca cttacgaaat gtggcacgcc gaaaaggctc gtcgctgctt 61 ctgtttctaa tgctaagtac cgtactggtc gcggcaaaag aggacggtaa gttgggggaa 121 gaggatgagg atttcgggtg gaatgatgaa gagccacctg ataatcagga tgtgcaggac 181 gggggaattc cgttggttcg gaaggaagag tttacaaata atcagcttta tgctgaagct 241 tatcagagtt atattcaagc tcttgcgtac cccgcccgac tagtcgtccg tccagactca 301 tcaaccgtcg tcgatgaatc gaaaatctca tttttctgtc gagcagatgg aaatccgttg 361 cctagtgtga tttggagagt caatggaaaa tccataacag atcataatcg aatatcaata 421 aaatccttgg ccaccggctt atcgactctc cgtttcgaac gtgtctctct ggatgacaat 481 gcgactgttg tgtcctgctc ggctgataat ggagttgcca atccagttgt cgcagaagca 541 tcactaaccg ttgtcccacg agacaaagtt ccgattgggt tccctcaaat tgaacttcat 601 ccatcattga agtcggtcga acaggggaaa actgcttatg tctcttgtcg ggtccgagga 661 gatcctcgag caaaagtcct ttggctccgt gacctgatcc cgctagacat tcgtgcagat 721 ggtagatact ctgtaagtac aatcggaaac cctggagccc tgatgattca gcatgctcga 781 gaagaagatc agggaaaata cgaatgcatt gcaaggaata cattaggagt tgctcactcg 841 aaagccgcaa atctttatgt taaagttcgc cgagttcctc cctacttctc ttacaaattg 901 gaacgtcaat atgttgttgg cgtcggcggg aatatcaact tgacatgcgt tgccgtgggt 961 tatccaatgc cacgtgtctt ctggaaaaag accgatttga tggtacttga cgatccttct 1021 actgctccaa ttggcaaaaa tgtgctcaca ctgacacacg tggaatcgac tgaaaacttc 1081 acctgtgttg ctgtcagtgc tctcggaaac attgaggcaa caacgacagt catagctaaa 1141 gaacttcctc cgccaccagt caacattgtt gtctcatcag taacttctga atctgtagtg 1201 attacctgga agccaccgaa atacaatgaa gctatcaata aatacgtggt taattatagg 1261 ctcaaatctg aaaacaaaga tgatgctgca ttgtttgcga aggatagtag agctgaagat 1321 gaaagtgaca gtgaaagata ttccgaaggt agatcatcgc gtggtaaaac catggagaca 1381 ctagagaata gcctggttat agacggtctt gttgcgtttc agacatacga attcacagtt 1441 cgaagtgccg gtccagttgg cgttggttta gagtcattac cagttgaggc ccaaacaaaa 1501 ccaagtaaac cagcaacagc tcccgtcagt ccacaagcca gaagtctgaa tcgcgattcg 1561 attctggtga aatggggtcc atgtgagcaa ccaaacgggc tcataacagg atataaagtg 1621 tattacacaa atgatctggt tacaactccg attcgagaat ggaaacaaca cgacgcgaaa 1681 tcagacgaat tcatgaccac catcaatggc ctcgaacctg attcaagata tttcgtacga 1741 gtgattgctc aaaactctga aggcgattcc ccattatcca cattggttac ggtagcaacc 1801 cgtcaaggaa tccctggcca acctccaatg ttgacggtta aagcgctcga ctcgaggcga 1861 atgcaattga catgggacaa acctctttac tcgtctccag ttgttggata cactgtccga 1921 tataacactt cggatggaga aaaggagctg acattgacat ctcctcatga aaagcatgtg 1981 gtgactggat tgcatccgga taagtattat tactttagag ttgctgctta ctcggataga 2041 ggacagggag agttcactga accaatgatt tccaaaacga ttgcatcgat acctctatcc 2101 tctccaacaa ttgtgtctgc ggcggcaacg tcctcgaaaa gtgtggaaat ccgatggaag 2161 ggtcccgaac agaaaaagtt gaacggcgtc ttgacggctt atcggattaa ctactttcgt 2221 ctcgaggact ctaaaactgc aaatttggaa tcggttgagt acgacgagga tatggacgat 2281 tcctcttcat ttcttgatcg aatgtctgtt gtggtgccta gtgatgcgac ctcttatgtt 2341 ctatccgatc ttctaccgta ctcatcctac gagattactg tcgcagcgtc gacaatggat 2401 ggatacggcc cggaaagctc gattcgtgtt gtgaaaactc ttgaggatgt accatcagcg 2461 cctcgaaact tcaatgcaga gctgaccagt gccacatcgg tcaaactgac atgggatgct 2521 ccagcagcgg ccaacggagc ccttctcggc tactacgtgt acctggatcg aatggtgaac 2581 ggagaaccgg tcgttgaaaa gggcagcaag aagcgaatag taatgattcg agattcttcg 2641 aaacgatact ttgagctgga tagtctcgac ccgaacaccg agtactcgtt ccgattgaac 2701 gcattcaaca gaaacgggga tggagagttt tcggagcgga aaagcatcat cacacaggga 2761 attccccccg aagcgcccga gatcgtgtct gtatcactgg atcgcgacga gccacccgtc 2821 gtagccagaa ttgagtggaa gatgccgaaa atgaagccga acgagacacc gatagaaaag 2881 tacaatctat ggttacgcgc acaaggatat ccggactcat atgtcaaggc gaagacagtc 2941 gacggaaccg atctatcaac tactatttct ggtctttgga tgggagtagt gtatgatgtt 3001 ctgcttgccg ctgaaaatcg agaaggacga tcccaaaatg ccacagaaac catcgcaacg 3061 ccggttggaa gtcccgatgg tgaaccgatt gatgttcagt acgaagtgat gaaaggaaag 3121 atcgtcgttt catggaggcc cccatctgag gagaagagaa atggtaacat cacaagttac 3181 aaggccattt tgtcggcgat ggatgctact gcggatcgat atgagcaacc ggtgcctgct 3241 ccttccacat catcgacatt cgaggtgaac gtacgcagag cctacctgtt caaagtagcg 3301 gccgccacaa tgaagggtat cggaccctac tcgccagtgc tcacaatcaa ccccgatcca 3361 gctgcacttg tcggacctcc taccaatgtt cgcgttgaag ccacaagcaa ttcgacagca 3421 gttgtgcaat gggatttcga atcacagaag gctgactcat ttgttgtcaa gtacatgcac 3481 gagcctggaa accgaatgga cacagaaaag tggaagcagt tgcccgttgt gagcatagat 3541 aaagagaacc caaaacgatt tgcagtggtc tccgacttga acgcgcataa gccatacgca 3601 ttttgtgtgt tggccgttaa gaataatcga caagggcctt gctctgatcc tccgactgtc 3661 cttgagagtg tcacgccgac gtatatggtt caaaacctga gggttctgtg gaagactagc 3721 aactctgtgc agctcacgtg ggagtataat ggtccgcgaa acgtcggatt ctatgttaat 3781 cacactggac ggaaggatta tgtgaatcat gagctccagg agaaaacgat gtcgacacca 3841 ggatttggtc aagatgttga tgagaagcat cgtgaatatt tgtggacgaa tcttcggcct 3901 catatgatgt acacgataca tgttggagta agaacgcttc cacctggagc cagaaagtat 3961 tggcctcaag aagtggttac aatcactgat ccaactggac caccttttgt cgatgttcct 4021 aaattggttg attcctccgg aactcaacca ggacagcaga tgatcagatt gacacctgct 4081 acggaagagt atggacctat ttctcattat tggattatac ttgttccagc gaattatagc 4141 acggaagatg tcgtaaacct ggatccaatt gaattggaaa aagctacggc tgaaaagcgc 4201 gcccagcttg ccagatcctt gagcgtgtct ccatcgaaaa agttgaaacg aaaagcttcg 4261 gaagttggag atgattcgca aagcgcatct taccatccga aggagaagcg agctcgtcga 4321 gcaaccgtgc caggagcata tgtgactgca aggttgagtg ctgatcgagt caagcaacaa 4381 tacaggaata atcaaccatt tattgtggga gattcacagt tgtatgacgg gttcaccaac 4441 tacccactcg agcacaacct tcactaccga ctgatgatgc gggcgtttgc gaaaaatgat 4501 gtgcgaacca aggacagttt cgaacaacgt gcaccaatga gcgagaagct gtcccgtatg 4561 tactctgatt ctgttctaac tgagccattc acaatcaaat cggctcttcg cggagcttcg 4621 cagaagtcgt ctccttgggt tggagcgtgc atcgccttct tggtcttgtt ctcgattgtt 4681 ggaatgctga tatgttggtg gttgcgttgc aataagaagt ctgctggacg gcatccacga 4741 catggttcta tcacaaaggt tgcgttgact ggaaatatta tgaatggagg tggtggaata 4801 cctggagaaa caagcaagtt attatcgact tccaatgaat acggacgaca gattatgaac 4861 ccctatgagc agatgaatgg aaatcatcat atggaatcat cgatggatct ttatcctttg 4921 ccaacaagtc actctagatc taatggatat gcacctgttc ctgtcgcaat accatctctt 4981 ccaaataatg gaaacaatat gactacagta tcccatccag ctgttccgat agctgaactt 5041 gcgaatcata tcgagaggct tcgaatgaac aataatgcag gattccagtc agaatttgaa 5101 tctattgaaa ctggacaaca cttcacttgg gaacactcgt ctgctgatat gaataagcat 5161 aagaatcgat acgcgaatgt ggctgcctat gatcattcca gagttgtact ttccaatgtt 5221 gaaggatatc caggaatgga ttacatcaac gcaaattatg tggatggata tgacaaacca 5281 agaagctaca ttgccaccca gggaccactc ccggaaacat tttcggattt ctggagaatg 5341 gtttgggagg agcaatcggt tacaattgtg atgttaacaa atctggagga acgaagtcga 5401 gtgaaatgtg atcaatactg gccgagtcgg ggaactgcca catatggaga tatcgaggtg 5461 acactgttgg aaagcgttca tttggctcat tatacgatga gaacgatgcg attgaaaatg 5521 gttggagaac ctgaagttcg agagatcaag catctacagt atactgcatg gccggatcat 5581 ggagttcccg atcatccgac accgtttttg atcttcctga agagggtgaa aacgctgaat 5641 ccaaacgatg caggaccaat catatcgcat tgtagtgctg gaattggaag aactggagcc 5701 ttcattgtga ttgattgtat gctggaacgt ctccgctacg acaatacagt tgatatctat 5761 ggatgtgtta ctgcgttgag agcacagagg agttatatgg tacaaactga agagcaatac 5821 atctttattc atgacgctgt ccttgatgcg gtgaacagtg gatccacaga ggttcctgcc 5881 agtcggttgc atcaacattt gcacattctt tcacaaccat cagctgatca attgtctgga 5941 attgatatgg aattcaggca tttgacgaca ctgaaatgga ccagcaatcg gtgtactgtt 6001 gcgaatcttc cggtaaatcg accaaagaac cggatgctca gcgcagtacc gtatgattcg 6061 aatcgagtaa taatgagatt gcttcctgga gctgacggat ccgattacat caacgcatca 6121 tggattgacg gttacaaaga gcgcggagcc tacattgcca ctcaagcacc aactaacgag 6181 acagccgcag atttttggcg agcaatttgg gagcataaca gcccgataat cgccatgctg 6241 gtacggacaa acgaacgagg acaagagcaa tgtagtgact attggccatt ggaaactgga 6301 gttcaagttg gaatgctcgt cgttgagccg atggctgaat atgatatgaa acattatcat 6361 cttcgagagt ttaggatttc ggatattaat actcgcgaag tccgaaccgt tcgtcaattc 6421 catttcatgg agtggcctga tgtcggaaag ccgcacacag cagatcactt cctcgacttt 6481 gtcacccaag ttcacaatac gtatgctcaa ttcggatgta ctggcccgat tacagtacac 6541 tgttgctctg gagccggacg cactgcagtc ttcatcgcac tttcgatcat tttggatagg 6601 atgcgtgctg agcatgttgt tgatgttttc acaacggtta aactgctccg aacagaacgt 6661 caaaacatga ttcaagagcc agagcagtat cacttcctgt atctagctgc atatgagtac 6721 ctagccgcct atgacaattt ctcgtag //