Dbfetch
LOCUS NM_001276111 3586 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster snustorr (snu), transcript variant G, mRNA. ACCESSION NM_001276111 VERSION NM_001276111.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3586) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3586) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3586) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3586) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3586) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3586) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3586) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3586) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3586) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3586) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3586) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3586) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3586) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3586) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3586) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3586) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3586) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3586) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3586) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3586) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3586) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3586) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3586) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3586) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3586 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3586 /gene="snu" /locus_tag="Dmel_CG9990" /gene_synonym="CG9990; DmCG9990; Dmel\CG9990; Snu" /note="snustorr" /map="98E1-98E2" /db_xref="FLYBASE:FBgn0039594" /db_xref="GeneID:43391" CDS 511..2805 /gene="snu" /locus_tag="Dmel_CG9990" /gene_synonym="CG9990; DmCG9990; Dmel\CG9990; Snu" /note="CG9990 gene product from transcript CG9990-RG; CG9990-PG; snu-PG" /codon_start=1 /product="snustorr, isoform G" /protein_id="NP_001263040.1" /db_xref="FLYBASE:FBpp0307763" /db_xref="GeneID:43391" /db_xref="FLYBASE:FBgn0039594" /translation="MAATNNDGGTQPNAVAAWGAPANGPRNTQAAVSVRHAFKAYGKK KNANQVLNNLNMTVPKGTIYGLLGASGCGKTTLLSCIVGRRYMDAGEIFVLGGKPGTR GSGVPGKRVGYMPQEIALYGEFSIQETMMYFGWIFGMDTKEILERLQFLLNFLDLPSE KRLVKNLSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVHITKAGQK TVIITTHYIEEARQAHTIGLMRSGHLLAEESPSVLLSIYKCISLEEVFLKLSRIQSQK GDVTHVNFSNNISLHAMAFGSKMDKPSSSQEGGVVGLNFHQSKEVLINDSNGSIYTLN QEPYSPPPSRRNNNPNDEESCQDCYSNLCKITSKGKIRALLTKNMLRMWRNVGVMLFI FALPVMQVILFCLAIGRDPQGLNLAIVNGEMNDTENCYWEDGCHFKNLGCRYLSHLNT SVVKTYYEDLDDAKEAVRKGTAWGAVYISENFTDAFIARANLGRDSDDETIDSSEVKV WLDMSNQQIGVMLNRDIQLAFRDFAMGLLGQCGSNPKLGDVPIQFRDPIYGTMNPSFT DFVAPGVILTIVFFLAVALTSSALIIERTEGLLDRSWVAGVSPFEILFSHVITQFVVM CGQTTLVLIFMLVVFGVTNNGDLFWVIVLTLLQGMCGMCFGFLISSVCELERNAIQLA LGSFYPTLLLSGVIWPIEGMPVVLRYISLCLPLTLATSSLRSILTRGWAILESDVYIG YVSTLSWIVGFLVLTLLVLRAKRG" ORIGIN 1 cgtttatagt cgcgcttgaa acgcacgtgc aaaagtgcaa tcgccgtccg ctcgcttacc 61 gctcgctcgc tacctctctg tcgcactcgc tcttgcgctg cctccatctc tgtcgcatcc 121 attgacaaag tgtaaagtgc aaagctagca gcgccaacgt cgacgcagcg ccagcgtctc 181 agcatcagct taagtcaact cagctcggct cagtccgcct tttggccagc gactcaaagt 241 cagtcttggc cgaacctttc agcgcaacgc aagtgctccg gttatacgct ccctcggtcc 301 gttcgtcgtt ttttgtgtga acccccgtgg aacgtcgaca gatcccattc atcggcgatc 361 gagattacaa gcgatcgcgt tcgtgtccta agtctttcgt ttggcaagaa gtggattata 421 aaaagaaacc cgcgaaacga ctgaaattgt gtgcaaacat atttgctccc aggccaacta 481 gtacgcgcat ttatttccac agactccgcg atggcggcca caaacaacga tggtggcacg 541 cagccgaatg ccgtggcggc atggggtgct ccggccaatg gaccccggaa cacacaggcc 601 gccgtatccg tgcggcatgc cttcaaggcg tacggaaaga agaagaacgc caaccaggtg 661 ctgaacaacc tgaacatgac cgtgcccaag ggaacaatct atggtcttct gggagcctcc 721 ggatgtggca agaccaccct gctctcctgc atcgttggac gtcgttacat ggacgccggt 781 gagatctttg tgctgggcgg caagcccggc actaggggat caggtgttcc cggaaagcgt 841 gtgggctaca tgccccagga gatcgcactg tacggagagt tctccatcca ggagaccatg 901 atgtacttcg gctggatctt cggcatggat accaaggaga tcctggaacg tctacagttc 961 ctgctcaact tccttgatct gccgtcggag aagcgactgg tgaagaatct cagtggtggt 1021 cagcagcgtc gtgtgagttt cgctgtggcc ttgatgcacg atccagaatt gctgatcctg 1081 gacgaaccca ccgtgggtgt ggatccactg ctgcgtcaga gcatctggaa tcacctggtg 1141 cacatcacca aggcgggcca aaagacggtc attattacca cacattatat tgaagaggca 1201 cgacaggcgc atacgatcgg tctgatgcgg tcgggtcacc tgctggccga ggagtcaccc 1261 agcgtcctgc tctccatcta caagtgcatc agcctggagg aggtattcct caagctgtcc 1321 cgcatccaaa gccaaaaggg cgatgtgacc cacgtgaact tcagtaacaa catctcgttg 1381 cacgccatgg cctttggcag caagatggac aagccgagtt ccagccagga gggcggcgtg 1441 gtgggcctca acttccacca gagcaaggag gtgctcatta acgacagcaa tggctccatc 1501 tacacgctca accaggaacc ctacagtccg ccgccgtccc ggcgcaacaa taatcccaat 1561 gatgaggaga gctgccagga ctgctattcc aacctgtgca agatcacctc caagggcaag 1621 attcgcgccc tgctcaccaa gaacatgctc cgcatgtggc gcaacgtggg cgtcatgctc 1681 ttcatcttcg ccctgcccgt catgcaggtg atccttttct gcttggccat cggacgagat 1741 cctcagggcc ttaacctggc catagtcaac ggagagatga acgacacgga aaactgctat 1801 tgggaggatg gatgccactt caagaacctg ggatgtcgtt atctgagtca tttgaatacg 1861 agcgtagtta aaacatatta tgaggacctg gacgatgcca aagaggccgt gagaaagggc 1921 acagcttggg gggcggtcta catcagcgag aacttcacgg acgcctttat tgcccgagct 1981 aatttgggac gtgactccga cgacgaaacg atcgactcct ccgaggtcaa ggtctggctg 2041 gacatgtcca accagcagat cggcgtcatg ctcaatcggg acatccagtt ggccttcagg 2101 gacttcgcca tgggccttct cggccagtgc ggcagcaatc cgaaattggg cgacgtgccc 2161 attcagttca gggaccccat ctacggcacc atgaatccat cgttcaccga tttcgtggca 2221 cctggcgtga tcttgaccat tgtattcttc ttggctgtcg ctttgacgtc atcggctctg 2281 atcattgagc gcactgaggg cttgttggat cgctcctggg tggctggcgt ctcgcccttc 2341 gagattctat tctcgcacgt gatcacccag ttcgtggtga tgtgcggaca gaccactctg 2401 gtgttgatct tcatgctggt ggtgttcggg gttaccaaca acggcgacct attctgggtc 2461 atcgtgctga ccctgttgca gggcatgtgt ggaatgtgct ttggcttcct catctcctcg 2521 gtgtgcgagc tggagaggaa tgccatacag ctggcgctgg gctccttcta tcccaccctg 2581 ctgctgtctg gagtgatctg gccgattgag ggcatgcccg tggtgctgag atacatatca 2641 ctgtgcctgc cactaacgct agccacctct tcgctgcgct ccatcctcac acgtggctgg 2701 gcgatactgg agtcggatgt gtacatcggc tatgtgagca cgctgtcctg gattgtgggc 2761 ttcctggtgc tgacgcttct cgtgctgcga gccaaacgcg gctaggatct tcagatatta 2821 cgctactttt agatgcctaa ctttagaaca cgataagtcg tcctaattag tttacaccca 2881 cttcgggtct tcttcttaat tccactttcg agtttcactt cccttcgtat ctgcccaaat 2941 gtcataaatt atttaagcac attcgcagct ttccttagct ttccactcgg cactcgtttt 3001 tccttagact aagttccgca ctttcgtagt ttaaagcgta aggtttaggt actcctaaat 3061 gaaatgttgt aaatattttg tgtcacgaat tcagtaatcc gttgctctag atgtccatta 3121 tttgcaaccc tctgtactag accttttctc gacgccgaca cgggcagttt atcacataca 3181 aacgcaacta attttatata ttttcaatgg actgtgattg ttttttctac ataattcacg 3241 cgaatacacg tagggcaagc ctaaacaaaa agaaaacaca atgaaaacga acaaaaacaa 3301 tggtgggttt tgttattaac attaagtagc ttaaagcatt tttgtatggg tttaagtttt 3361 ttaaggtaaa acataattaa atacaataat gtacgcaacc ctaaagagta tgtaaaaata 3421 tatttcagga aatattttgc gcagagcata aatatttcac aacgaacaaa cataagacaa 3481 tgaacaacga acaagtgaaa aacgttctta tttaagtaaa tattaatgtg aacgcagtta 3541 tgtataaata ataataaagc gtgaataaat aaataaagtt aaattt //