Dbfetch
LOCUS NM_001276045 3286 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster lipophorin receptor 1, transcript variant R (LpR1), mRNA. ACCESSION NM_001276045 VERSION NM_001276045.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3286) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3286) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3286) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3286) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3286) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3286) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3286) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3286) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3286) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3286) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3286) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3286) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3286) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3286) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3286) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3286) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3286) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3286) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3286) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3286) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3286) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3286) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3286) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3286) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3286 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3286 /gene="LpR1" /locus_tag="Dmel_CG31094" /gene_synonym="CG31094; CG31095; CG4861; CG4870; CG4874; CT15569; Dmel\CG31094; lpr1" /note="Lipophorin receptor 1" /map="96F1-96F2" /db_xref="FLYBASE:FBgn0066101" /db_xref="GeneID:2768687" CDS 48..2654 /gene="LpR1" /locus_tag="Dmel_CG31094" /gene_synonym="CG31094; CG31095; CG4861; CG4870; CG4874; CT15569; Dmel\CG31094; lpr1" /note="CG31094 gene product from transcript CG31094-RR; CG31094-PR; LpR1-PR; lipophorin receptor 1" /codon_start=1 /product="lipophorin receptor 1, isoform R" /protein_id="NP_001262974.1" /db_xref="FLYBASE:FBpp0307224" /db_xref="GeneID:2768687" /db_xref="FLYBASE:FBgn0066101" /translation="MFKSDLCVLIVISLAFSLHSGQSLEAKCDEKQFQCHSGDCIPIR FVCDGDADCKDHSDEQIKECKFIEATCSSDQFRCGNGNCIPNKWRCDQESDCADGSDE ANELCMNACPNNEFKCQTVDQCIPRSWLCDGSNDCRDKSDEAHCNQTCRADEFTCGNG RCIQKRWKCDHDDDCGDGSDEKECPVVPCDSVAEHTCTNGACIAKRWVCDGDPDCSDG SDERSCANVTKTTTPCLSHEYQCKDRITCLHHSWLCDGDRDCPDGDDEHTANCKNVTC RADQFQCGDRSCIPGHLTCNGDKDCADGSDERDCGLSLSLGINQGGCNATSEFDCGGG QCVPLSKVCDKRKDCPDGEDEPAGKCGINECASKNGGCMHQCIDLKVGHHCECHEGYK LSPDKRNCQDINECEVPGKCSQICVNEIGGFKCECEAGYMRDPKNHTRCKASEGHASL LLARRHDIRKIALDHMEMTSIVNSTKAATALDFVFRTGMIFWSDVTTQSIYKAPIDEG NEKTVVLTKSSVTSDGLAVDWIYNHVYFTDTHKCTIELTNFEGSMGKVLVKDSLDIPR SIALDPIEGWMYWSDWGASPRIERAGMDGSHRTTIISYDVKWPNGITLDLVKKRIYWV DGKLNVISSANYDGSQRSQVLYSGEYLRHPFSITTFEDNVYWTDWDKQAVFKANKFTG EDVEPVTAMHMLQHPMVVHVYHPYRQPDGVNHCQSVNGHCSHLCLPAPRINERSPRIS CACPTGLKLMVDGLMCVEDLADQRPVKNHTQIEKTTTPSEQPDSGFIALVVIASLSGF AVLLSVLLLIGYRYCSKRRINSMNFENPIYRKTTTTEDHFSLRKNLPARIYDHTSVMD EEYSPVIGISSY" ORIGIN 1 gaagtctaga tacatacagt ctgaaaaacg tattttcgta cagtacgatg tttaaaagtg 61 atctctgtgt gctgattgtg atctccttgg cgttttcctt acattcaggc caatccctgg 121 aggccaagtg cgatgagaag cagttccagt gccacagcgg cgactgcata cccattcgat 181 tcgtttgcga cggcgatgcg gactgcaagg atcacagcga tgagcagatt aaggagtgca 241 agtttataga ggccacttgc tcgtcggacc aattccgttg cgggaatggc aactgcatac 301 cgaacaaatg gcgctgcgat caggagagcg attgtgccga tggctccgat gaagccaacg 361 aattgtgcat gaacgcctgt cccaacaacg agttcaaatg ccaaacggtc gaccagtgca 421 ttccgcgcag ctggctctgc gatggcagca acgattgccg cgacaagtcc gatgaggcgc 481 actgcaacca gacctgtcgt gccgacgagt tcacctgcgg caatggacgg tgcatccaga 541 agcgatggaa gtgcgaccac gacgacgact gcggcgatgg atccgacgag aaggagtgcc 601 cagtggtgcc ctgcgactcc gtggcggagc acacctgcac gaatggagcc tgcatcgcca 661 agcggtgggt ctgcgacggt gatccggact gctccgatgg ctccgatgag cggtcctgtg 721 cgaatgtgac caagacgacc acgccctgct tatcgcacga ataccagtgc aaggatcgca 781 tcacctgcct gcatcacagc tggctctgcg atggtgaccg cgactgtccc gatggcgacg 841 atgagcacac agccaactgc aagaacgtca cctgccgggc ggaccagttc cagtgcggcg 901 atcgcagctg cattccagga catctcacct gcaacggcga caaggactgc gccgatggca 961 gcgacgaacg ggattgcgga ttgagtctga gtctggggat caaccaagga ggatgcaacg 1021 caaccagcga attcgactgc ggtggaggtc agtgcgttcc actctcgaag gtctgcgaca 1081 agaggaagga ttgtccggat ggcgaggacg agccggcagg aaagtgcggg ataaacgagt 1141 gcgcctcgaa gaacggaggc tgcatgcacc agtgcatcga tctgaaggtg ggccaccact 1201 gcgaatgcca cgagggttac aagttgtctc cggacaagcg gaactgccag gatatcaatg 1261 agtgcgaagt tcccggaaag tgctctcaga tatgcgtgaa cgaaatagga ggcttcaagt 1321 gtgagtgcga agcgggctac atgagggatc ccaaaaatca caccagatgc aaggccagcg 1381 agggacacgc ctccctgctc ctggccagac gccatgacat ccgcaagata gcactcgacc 1441 acatggaaat gacctccatt gtgaatagta caaaggcagc cactgccctg gactttgtgt 1501 tccgcacggg tatgatcttc tggagcgatg tgaccaccca gagtatatat aaagcaccga 1561 ttgatgaggg aaacgaaaag acggtagtgt tgactaaatc ctcggtgacc tcggatggcc 1621 tggctgtcga ttggatctat aaccatgtct actttacgga cacccacaag tgcaccatcg 1681 aactgaccaa cttcgagggc agcatgggta aggtcctggt aaaggactcc ctggacattc 1741 ctcgttcaat tgctttggat cccattgagg gctggatgta ctggtccgac tggggcgcct 1801 ctccgcgcat cgaaagggcg ggtatggatg gctcccaccg caccaccatc atcagctatg 1861 acgtcaagtg gcccaatggt atcaccttag acctggttaa gaaacgcatc tactgggtag 1921 atggcaagct taacgttatc tcgtcggcga actatgatgg ctcgcaaagg agccaggtgc 1981 tctactccgg cgaatacctg cgacatccct tctcgatcac caccttcgag gacaatgtct 2041 actggaccga ctgggacaaa caggccgtct tcaaggcgaa caagttcacc ggggaggatg 2101 tggagcccgt tacagcaatg catatgctcc agcatccaat ggtggtgcac gtgtaccatc 2161 cttaccgcca gccggatggc gtgaatcact gccagtcggt gaatggccac tgttctcatc 2221 tctgcctgcc agctcccagg atcaatgaga ggagtcctcg catatcctgc gcctgtccca 2281 ccggtctgaa gctgatggtc gatggcctca tgtgcgtcga ggatcttgcc gaccagcgtc 2341 cagtgaaaaa ccatactcaa atcgaaaaga ccacaacgcc cagtgagcag ccggattccg 2401 gctttattgc actggtggtc atagccagtc ttagtggatt cgctgtcctg ctatcggtgc 2461 tcctgctcat tggctaccgc tactgcagca agcgacgcat caactcgatg aacttcgaga 2521 accccatcta ccgcaagacc accaccacag aggatcactt cagtttgcgc aaaaatctgc 2581 cggcgcggat ctacgaccac accagtgtca tggatgagga gtactcaccc gtcataggca 2641 tatcctcgta ttagattgat tcctctggaa tcgtgtgaaa tgtggattgg atgattgttg 2701 cgcttggtcg ctgggaaaat tagatgacca atgctaactc gagacccgcg gcagaaacac 2761 acacgcctga agactgagca actctgtgta ttgtgtaaat taattatttt aaaattttaa 2821 ggcacggcaa ggacggcggg tcaccttgga gcgcatcctt aaaggatgct gtacaaaata 2881 ctatgtcgca gagttctatc acaaataaac aaaagaaaaa caaaacagaa atagttacga 2941 gaaacgtaaa aggaaacgag aaatctaatt gctaattata aattacatag ttccaaactg 3001 tatatagctg taagtgtgca ttatttttaa atgacgcaac ttaatattac tatacgtaaa 3061 catgacaaag agatcattgt gcttatggtc tactattaga gcaagttgag aaattatatt 3121 tctgttgtca aggagcagag tcgttttatt atattaaaat tattactgca tacgtattag 3181 ccttttgtta actgtatttg ttaagtgtac atacatatgt atatgtttcc ccactaaaaa 3241 gaaaatatga tgaataataa actcagaaca tacttatgtg tagcgt //