Dbfetch
LOCUS NM_001275695 2945 bp mRNA linear INV 26-DEC-2023
DEFINITION Drosophila melanogaster gilgamesh (gish), transcript variant L,
mRNA.
ACCESSION NM_001275695
VERSION NM_001275695.1
DBLINK BioProject: PRJNA164
BioSample: SAMN02803731
KEYWORDS RefSeq.
SOURCE Drosophila melanogaster (fruit fly)
ORGANISM Drosophila melanogaster
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE 1 (bases 1 to 2945)
AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St
Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K.,
Strelets,V., Russo,S.M. and Gelbart,W.M.
CONSRTM FlyBase Consortium
TITLE Gene Model Annotations for Drosophila melanogaster: Impact of
High-Throughput Data
JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015)
PUBMED 26109357
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 2945)
AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St
Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B.,
Russo,S.M. and Gelbart,W.M.
CONSRTM FlyBase Consortium
TITLE Gene Model Annotations for Drosophila melanogaster: The
Rule-Benders
JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015)
PUBMED 26109356
REMARK Publication Status: Online-Only
REFERENCE 3 (bases 1 to 2945)
AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I.,
Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R.,
Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G.,
Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N.,
Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A.,
Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E.
TITLE The Release 6 reference sequence of the Drosophila melanogaster
genome
JOURNAL Genome Res 25 (3), 445-458 (2015)
PUBMED 25589440
REFERENCE 4 (bases 1 to 2945)
AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M.,
Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F.,
Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E.
TITLE Sequence finishing and mapping of Drosophila melanogaster
heterochromatin
JOURNAL Science 316 (5831), 1625-1628 (2007)
PUBMED 17569867
REFERENCE 5 (bases 1 to 2945)
AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
TITLE The Release 5.1 annotation of Drosophila melanogaster
heterochromatin
JOURNAL Science 316 (5831), 1586-1591 (2007)
PUBMED 17569856
REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325]
REFERENCE 6 (bases 1 to 2945)
AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D.,
Ashburner,M. and Anxolabehere,D.
TITLE Combined evidence annotation of transposable elements in genome
sequences
JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005)
PUBMED 16110336
REFERENCE 7 (bases 1 to 2945)
AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A.,
Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A.,
Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W.,
Celniker,S.E., Rubin,G.M. and Karpen,G.H.
TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly
JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002)
PUBMED 12537574
REFERENCE 8 (bases 1 to 2945)
AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J.,
Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E.,
Rubin,G.M., Ashburner,M. and Celniker,S.E.
TITLE The transposable elements of the Drosophila melanogaster
euchromatin: a genomics perspective
JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002)
PUBMED 12537573
REFERENCE 9 (bases 1 to 2945)
AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S.,
Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E.,
Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L.,
Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D.,
Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J.,
Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M.,
Rubin,G.M. and Lewis,S.E.
TITLE Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review
JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002)
PUBMED 12537572
REFERENCE 10 (bases 1 to 2945)
AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W.,
Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E.,
Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M.,
Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S.,
Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M.,
Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W.,
Gibbs,R.A. and Rubin,G.M.
TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence
JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002)
PUBMED 12537568
REFERENCE 11 (bases 1 to 2945)
AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D.,
Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F.,
George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N.,
Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X.,
Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D.,
Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L.,
Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D.,
Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M.,
Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S.,
Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P.,
Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A.,
Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B.,
Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I.,
Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S.,
Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C.,
Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S.,
Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z.,
Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J.,
Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J.,
Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z.,
Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C.,
Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A.,
Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C.,
McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C.,
Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L.,
Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K.,
Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S.,
Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K.,
Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I.,
Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C.,
Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R.,
Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A.,
Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT,
Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F.,
Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H.,
Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O.,
Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C.
TITLE The genome sequence of Drosophila melanogaster
JOURNAL Science 287 (5461), 2185-2195 (2000)
PUBMED 10731132
REFERENCE 12 (bases 1 to 2945)
AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R.,
Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R.,
Smith,E., Yu,C. and Rubin,G.
CONSRTM Berkeley Drosophila Genome Project
TITLE Drosophila melanogaster release 4 sequence
JOURNAL Unpublished
REFERENCE 13 (bases 1 to 2945)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 14 (bases 1 to 2945)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 15 (bases 1 to 2945)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 16 (bases 1 to 2945)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 17 (bases 1 to 2945)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 18 (bases 1 to 2945)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 19 (bases 1 to 2945)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 20 (bases 1 to 2945)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 21 (bases 1 to 2945)
AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R.,
Park,S., Svirskas,R. and Karpen,G.
TITLE Direct Submission
JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne
Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
REMARK Direct Submission
REFERENCE 22 (bases 1 to 2945)
AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S.,
Svirskas,R. and Rubin,G.
TITLE Direct Submission
JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
Lawrence Berkeley National Laboratory, One Cyclotron Road, MS
64-121, Berkeley, CA 94720, USA
REMARK Direct Submission
REFERENCE 23 (bases 1 to 2945)
AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
CONSRTM Drosophila Heterochromatin Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project,
Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron
Road, Mailstop 64-121, Berkeley, CA 94720, USA
REFERENCE 24 (bases 1 to 2945)
AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J.
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive,
Rockville, MD 20850, USA
COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This
record is derived from an annotated genomic sequence (NT_033777).
##Genome-Annotation-Data-START##
Annotation Provider :: FlyBase
Annotation Status :: Full annotation
Annotation Version :: Release 6.54
URL :: http://flybase.org
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..2945
/organism="Drosophila melanogaster"
/mol_type="mRNA"
/db_xref="taxon:7227"
/chromosome="3R"
/genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2]
bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]"
gene 1..2945
/gene="gish"
/locus_tag="Dmel_CG6963"
/gene_synonym="anon-WO0118547.425; CG6963; CK1; CK1-gamma;
CK1gamma; CK1[[gamma]]; CKI-related; CKIgamma;
Dmel\CG6963; Gish; Hrr25; ms(3)89B; NEST:bs27c08; spider;
Spider"
/note="gilgamesh"
/map="89B9-89B12"
/db_xref="FLYBASE:FBgn0250823"
/db_xref="GeneID:49701"
CDS 1041..2654
/gene="gish"
/locus_tag="Dmel_CG6963"
/gene_synonym="anon-WO0118547.425; CG6963; CK1; CK1-gamma;
CK1gamma; CK1[[gamma]]; CKI-related; CKIgamma;
Dmel\CG6963; Gish; Hrr25; ms(3)89B; NEST:bs27c08; spider;
Spider"
/EC_number="2.7.11.1"
/note="CG6963 gene product from transcript CG6963-RL;
CG6963-PL; gish-PL; spider; gilgamesh; casein kinase
1gamma; CKIg-like; NEST:bs27c08"
/codon_start=1
/transl_except=(pos:2445..2447,aa:OTHER)
/product="gilgamesh, isoform L"
/protein_id="NP_001262624.1"
/db_xref="FLYBASE:FBpp0303074"
/db_xref="GeneID:49701"
/db_xref="FLYBASE:FBgn0250823"
/translation="MQRRERQASGGGPQTTTAGPSAGNVANATTALAGGKSSSNNMYS
TRQSVSTTTGVLMVGPNFRVGKKIGCGNFGELRLGKNLYNNEHVAIKMEPMKSKAPQL
HLEYRFYKLLGSHADNAPDGIPRIYHLGTCGGRYNAMVLELLGLSLEDLFNICARKFS
LKTVLMIAKQLLHRIEYVHSRHLIYRDVKPENFLIGRTSTKREKIIHIIDFGLAKEYI
DLDTNRHIPYREHKSLTGTARYMSINTHMGREQSRRDDLEALGHMFMYFLRGSLPWQG
LKADTLKERYQKIGDTKRATPIEVLCDGHPEEFATYLRYVRRLDFFETPDYDFLRRLF
QDLFDRKGYTDEGEFDWTGKTMSTPVGSLQTGHEVIISPNKDRHNVTAKTNAKGGVAA
WPDVPKPGATLGNLTPADRHGSVQVVSSTNGELNPDDPTAGHSNTPITQQPEVEVVDE
TKCCCFFKRKKKKSTRQKXLDGVQCSPEREAVTLLRATSHSNSRDSVLNNPSQDYIQQ
ATSQHTLRYPPSASMLTPTPTTNTPTLPL"
ORIGIN
1 gcagattcgt tttttagtcc caaatcagcc gcaaaaacag tgtcgaacat tgctttgatt
61 tccacgatcg tgagcattaa aagtttaggc gtgatactga ccggttaaat ttcccttaat
121 tgaaatttaa ctacatattt aaacagcaac atagtccctt ttgcctaaaa tgtcatcaaa
181 aactgggagg aaaaatatca tagcaacaat ctgaatgaat tcggagattc agatctgttg
241 tcacaaaaat tgttggataa aatgtgcgaa agtgtgtttg tcaaattgtt tagccaaaat
301 tatttgttta catagttgtt cagcgtagca cgaggctgtt ttccttaatt cttaacaaca
361 tagatacact cgccttggct aatttacacc ggaacctaaa gccgattaac aataggaaaa
421 tagtcctacg acaaatagcc cgccttttga catatgaaca cataactaaa ctaccacaca
481 gctcaccaaa aacataaaat aaattcggaa agtatagcac caaagctgaa atttcaagga
541 gatgctgctc aaatttcata cttgatgtca aacaacgacg accccatagc aacaacaaca
601 acaacagcag aaagagaagg aaaaggaaca actggaataa ctgtaagcta gcgaacagag
661 ggagagaggc aatctctgta cacacacctg tcgtccagcg ggggaaagag caaaagagag
721 cgacggatct cccgtgtgtg ttgttcgcat gcgcgacatg cgcggacgct aagtgagtgt
781 gagtgagtgc gcgaatgcgt gtgagtgtgg gcggtgagga taattcgctc aattcgcacg
841 catcccacag atcctgcaga tcctccagtt tgttcgtcaa acagagtcag catttcggat
901 caaaccagtt gcctgtcagc aacattaaca gcctcaacgt tggaaaaaaa aaaacaaaag
961 cagcagcggc agtcgataaa aaaatcatta tcaaaattac ggaaaagcga tcaaaattca
1021 agcgagatta gctaggcgaa atgcagcgac gagaacggca agcaagtggc ggtggcccac
1081 aaacgacaac tgccggtcca tccgctggta atgtggcaaa tgccaccaca gccctagccg
1141 gtggtaaaag ctcaagcaat aacatgtatt ccacccgcca atctgtaagc accacgaccg
1201 gtgtacttat ggtcggacca aattttcgtg tcggtaaaaa aattggctgt ggtaattttg
1261 gcgaattgcg tttaggcaaa aacctttaca acaatgaaca tgtagcaata aaaatggagc
1321 ctatgaagtc aaaggctccg caactacact tagagtatag gttttataaa ctattaggat
1381 cacatgccga taacgcccca gatggcatac cacgcattta tcatttgggc acttgcggtg
1441 gccgttacaa tgccatggtt ttagagttat tgggattatc attagaagat ctcttcaata
1501 tttgcgcccg taaattttca cttaagactg tattgatgat agcgaaacaa cttctccacc
1561 ggatcgaata tgttcatagt cggcacttaa tatataggga tgtgaaacca gagaactttc
1621 tcattggcag aacgtcaaca aaacgtgaaa aaattataca tataattgat ttcggtttgg
1681 ccaaagaata cattgattta gatacaaata ggcatatacc atatcgggag cataaatccc
1741 taactggaac ggcacgttat atgtcaatca acacgcacat ggggcgtgag cagtcgcgac
1801 gcgatgatct ggaggcattg gggcatatgt ttatgtattt cttaaggggt tcactgccgt
1861 ggcaaggcct aaaggctgat acactcaagg agagatatca aaaaatcggt gatacgaaac
1921 gagcaacgcc catcgaggtg ctttgtgatg gacatccgga agagtttgcg acatatttgc
1981 gttatgtacg gcggttagat tttttcgaaa ctcccgacta tgattttctg cgaagactgt
2041 ttcaagactt attcgatcgt aagggataca ccgacgaggg cgagttcgac tggacaggga
2101 agacaatgtc aacgcccgtc ggatctctgc aaactggcca tgaagtcatc atttcaccaa
2161 ataaagatcg tcataatgtt acggctaaga caaatgccaa aggaggtgtt gctgcgtggc
2221 ctgatgtgcc aaagccgggg gcaacactgg gcaatctaac gccggccgat cggcatggtt
2281 cagtacaggt tgtgagttcg acgaatggcg aactaaatcc ggacgatccc acggccggac
2341 actcaaacac gcccatcaca cagcagccgg aagtcgaagt ggtcgatgaa acaaaatgtt
2401 gttgtttctt taaacgaaag aagaagaaat cgacgcgcca aaaatgacta gacggtgtac
2461 aatgtagtcc agaacgcgag gcagtcaccc tgctgcgtgc cacttcacat tcaaactcac
2521 gggatagcgt attgaataat ccgagtcagg attatatcca gcaggcaacg tcgcagcata
2581 cgttgcgtta tcctccatcc gcgtcgatgt tgacgccaac accaactaca aacacaccga
2641 cacttccgtt gtaatttata taaatataaa gccagatgca aaatgcagaa agcaacaaaa
2701 aaaatattaa acgaaaccca acaaaacaaa aacaaaacaa atgaaccccg tacacattaa
2761 atacactaaa aaacagtaaa aacaaacaaa atgaaaccaa ttttgattaa ttattgtaat
2821 gattgtattt tattattatt tttattattt accaattttg cgtttattat ataaattatt
2881 ataattatta attatattat taattaatgc tattataaat aaaaaagaaa agaaaattca
2941 aacgt
//