Dbfetch
LOCUS NM_001275516 3071 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster arginine methyltransferase 4, transcript variant B (Art4), mRNA. ACCESSION NM_001275516 VERSION NM_001275516.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3071) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3071) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3071) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3071) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3071) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3071) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3071) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3071) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3071) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3071) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3071) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3071) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3071) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3071) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3071) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3071) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3071) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3071) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3071) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3071) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3071) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3071) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3071) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3071) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3071 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3071 /gene="Art4" /locus_tag="Dmel_CG5358" /gene_synonym="CARM1; CG5358; dArt 4; Dart4; DART4; Dmel\CG5358; PRMT4" /note="Arginine methyltransferase 4" /map="85F4-85F4" /db_xref="FLYBASE:FBgn0037770" /db_xref="GeneID:41219" CDS 382..1974 /gene="Art4" /locus_tag="Dmel_CG5358" /gene_synonym="CARM1; CG5358; dArt 4; Dart4; DART4; Dmel\CG5358; PRMT4" /EC_number="2.1.1.319" /EC_number="2.1.1.321" /note="CG5358 gene product from transcript CG5358-RB; CG5358-PB; Art4-PB; CARMER; coactivator Arg methyltransferase for Ecr/Usp; arginine methyl-transferase 4; arginie methyl transferase 4" /codon_start=1 /product="arginine methyltransferase 4, isoform B" /protein_id="NP_001262445.1" /db_xref="FLYBASE:FBpp0305840" /db_xref="GeneID:41219" /db_xref="FLYBASE:FBgn0037770" /translation="MSSLRPEEARKLATAASVSPLSNCQFCGVVISSIADEQKLEFTN KYKGSCTLLCSYDSQGVVLRVVSDDDRSHVLKEYMIAADTDAAQMGRRSYAVSLDADN LVLRFASEQDQQLFRKVVENVKHLRPKSVFSQRTEESSASQYFQFYGYLSQQQNMMQD YVRTSTYQRAILGNAVDFQDKIVLDVGAGSGILSFFAVQAGAAKVYAIEASNMAQYAQ QLVESNNVQHKISVIPGKIEEIELPEKVDVIISEPMGYMLYNERMLETYLHARKWLKP QGKMYPTHGDLHIAPFSDESLYSEQYNKANFWYQSAFHGVDLTTLHKEGMKEYFRQPI VDTFDIRICMAKSVRHVCDFLNDKEDDLHLISIPLEFHILQTGICHGLAFWFDVEFSG SSQNVWLSTSPTAPLTHWYQVRCLLPMPIFIKQGQTLTGRVLLEANRRQSYDVTIDLH IEGTLISSSNTLDLKNPYFRYTGAPVQAPPGTSTQSPSEQYWTQVDTQGSRNSSSMLN GGISVNGIGEGMDITHGLMHPH" ORIGIN 1 tatttgttcc agctctagca ctttttgcaa aaaagaacgc atgttccgtg tgaaatcaat 61 acgaaatcaa caagagcgat cgattttgag taatcgtccg agttgaaaag cagcgcacta 121 tatagttccc agcgccaatt aatccagctg cccgagtcac cagccatttt gtgtgtggtg 181 gaaaattttg cagatagaaa aaattgcgcg tctgtctgtc tgcatctgcg tatctgtgtg 241 tgtgcgtgtg ctagagtgtt tgtgtgtgtg cgtgcgtgcg tgtgtatagc gaggtctaca 301 ttgtcaatta acaagggaaa aaagacgctt gtggtcctgc tttgttcctt tgcctcttta 361 ccctccaaaa agccagccaa catgtccagc ctgcgacccg aggaggcccg aaaactggcc 421 accgccgcct ccgtttcgcc gctgagcaat tgccaatttt gcggcgtggt aatcagctcg 481 attgccgacg agcagaagct agagtttacc aacaaataca agggaagctg cacgctgctc 541 tgcagctacg attcccaggg tgtcgtcctc cgtgttgtgt cagacgacga ccggagccac 601 gtgctcaagg agtacatgat agccgccgat acggatgccg cccaaatggg acgaaggagt 661 tatgccgttt ccctggacgc cgacaatcta gtgctgaggt ttgccagcga gcaggaccag 721 cagctcttcc gcaaagtggt ggagaacgtg aagcacttga gacccaagtc cgtgttctcg 781 cagcgcactg aggagtcgtc cgcctcgcag tacttccagt tctacggcta cctcagtcag 841 cagcagaaca tgatgcagga ctatgtaagg acaagcacgt atcagcgggc cattctaggc 901 aatgctgtgg attttcagga caagatcgtc ctggatgtgg gcgccggctc gggcattctc 961 tccttctttg ccgtgcaggc gggagctgcc aaagtgtacg ccattgaggc ttccaacatg 1021 gcccagtacg cccagcagct ggttgagtcc aacaatgtgc agcataagat ctctgtgata 1081 ccggggaaga tcgaggagat cgagctgccc gagaaagtgg acgttatcat atcagagcct 1141 atgggctata tgctgtacaa cgagcgcatg ttggagacct atctgcatgc cagaaagtgg 1201 ctcaagccgc aaggaaagat gtaccccacg cacggcgact tgcacatagc acccttttcg 1261 gacgaatcgc tctactcgga acaatataac aaggccaact tctggtacca gtcggcgttc 1321 cacggcgttg accttaccac gctgcacaaa gagggcatga aggagtactt ccgacagccc 1381 attgtggaca ccttcgacat ccgcatatgc atggccaagt cggtgcggca cgtgtgcgac 1441 tttctcaacg ataaggagga cgatctgcat ttgataagca tccccctgga gtttcacatt 1501 ctgcaaactg gcatctgcca tgggctggcc ttttggtttg atgtggagtt tagcggcagc 1561 agccagaatg tgtggctctc aacgtcgccc acagcgcctc tgacacattg gtatcaggtt 1621 cgctgccttc tgcccatgcc catctttatt aagcagggcc agacgctgac cggccgtgtc 1681 ttactggagg ccaatcggcg gcagtcgtat gacgtgacca tcgacctaca catcgaaggc 1741 acgctgattt cgtcgagcaa caccctggac cttaagaatc cgtattttcg gtacacgggg 1801 gccccggtcc aggcaccgcc ggggactagt acccaaagtc catctgagca gtactggaca 1861 caagtggaca cgcaaggatc acgcaattct tcaagcatgc taaatggagg gatcagcgtg 1921 aacggaatag gcgaaggcat ggacatcact catggactta tgcatccgca ctaggggggc 1981 ggtggatcga ataacaatac atctttctgg gaattccctt tgctctaagt ccgctcactt 2041 tctacgcttg atcctaattt tgccaatttt tgttttgtta cagtttatga ttaggttatt 2101 tattgaaaag tgtaaaatat ttttatctat tttcgaaagt tagttctgtt ctgttttgca 2161 taccttttaa caacctcttt ccctatcgtg ctatacttat cctcccttct cttacccatt 2221 taatcgatcg gacaaatcga aggaaatcca gcatcccagc aagtaaccaa catacaaaca 2281 atcaacaaat caaggcagac taatgtagtt gtttagaaca cgcagcatat taataagcct 2341 aagctaattt aagcccatag taattagagt ttttaacgta tgtgaattgt aataccgata 2401 tttagcccgc acgggactgc gcttcaggaa gtttattagt taatatgccg attgccaatt 2461 gcagattttg ccgtaagctt tgaacaaacc aacaaattca gattgtactg tatctattat 2521 gtgtgttatt atactatata ttgtgtgtac ctccagctag tttcaatttt tgtacttgtc 2581 gaccgtgttt atgtttagtt cgtttcaaaa tgtaagaaat tgctcatagg atttagtgct 2641 aagctacgat atcattacta aaggccgacc tgggtcgaga gattatactt atacccccaa 2701 tacgattatg attaattcag ttcagtggag gcacacctcg ttcgatccta agttacgcat 2761 ccaagcccag atcctgtcat agacccaact atatcgctgc cagcaagccg agcgctatat 2821 aagcatatac acctagatat acgcgttagg tacgccaacc tatacacacc ccgacattct 2881 cgcattcgta tcctgtttgc ggactgtact ttatagagca gcaagtagaa acacaaaaac 2941 actacaacac ccaatacact gcaaacataa atataaagca aaacatatac aattatatat 3001 atatatatat atatacgaat agatataccg catgtatgca gatgagagaa caatgtcaaa 3061 gcaaaagcag c //