Dbfetch
LOCUS NM_001275422 2748 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster Arginyl-tRNA synthetase, mitochondrial (ArgRS-m), transcript variant B, mRNA. ACCESSION NM_001275422 VERSION NM_001275422.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2748) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2748) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2748) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2748) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2748) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2748) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2748) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2748) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2748) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2748) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2748) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2748) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2748) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2748) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2748) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2748) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2748) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2748) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2748) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2748) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 2748) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2748) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 2748) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 2748) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2748 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2748 /gene="ArgRS-m" /locus_tag="Dmel_CG10092" /gene_synonym="atl; CG10092; Dmel\CG10092" /note="Arginyl-tRNA synthetase, mitochondrial" /map="84E4-84E4" /db_xref="FLYBASE:FBgn0037526" /db_xref="GeneID:40929" CDS 63..1847 /gene="ArgRS-m" /locus_tag="Dmel_CG10092" /gene_synonym="atl; CG10092; Dmel\CG10092" /EC_number="6.1.1.-" /EC_number="6.1.1.19" /note="CG10092 gene product from transcript CG10092-RB; CG10092-PB; ArgRS-m-PB; arginyl tRNA ligase" /codon_start=1 /product="Arginyl-tRNA synthetase, mitochondrial, isoform B" /protein_id="NP_001262351.1" /db_xref="FLYBASE:FBpp0305960" /db_xref="GeneID:40929" /db_xref="FLYBASE:FBgn0037526" /translation="MERPHIGLFTYKICNALKELTERMIRLRQAICEQLPHLKNACYA LEVPVKKQQLQNSRRPTVEWILPSAFAQQEVELLDSLKKRRFEAYVENVRIVPSAGRS AAKIEFQLQPQVFVEQLLQTKEIALHPSPFAAEHIVVEYSSPNIAKPFHVGHLRSTII GNVLANLHEHLGYRTTRLNYLGDWGTQFGLLVLGVQLLNVSDKEMQLSPIETLYKSYV AANKAAEQRPEIAQQARDLFAALEGGTDKSMAKKWQQYRNYTIEDLSKVYNRLGVHFD SYEWESQYSQQQIQDVLDKLRSAGLLQPEHDGREIVVVDGRRIPVIKSNGSTLYLARD IAALLERLSRFQFSRLLYVVDNGQADHFNALFKTTAALDDRLSLEQLQHVKFGRIYGM STRQGKAIFLKDVLDEARDIMREKRNISATTRENYNLDDEHVCDILGVSAVLVNVLKQ RRQRDHEFSWQQALQVNGDTGIKLQYTHCRLHSLLDNFRDVDLDDIKPDWKHFSTEPA DALDLLYALARFDQSVWQSKEQLEACVLVNYLFGLCNATSQALKRLPVKQESSLEKQL QRLLLFHAAKKTLRHGMELLGLRPLNQM" ORIGIN 1 ggttagtctg tgatgtcaaa acagctgatg tgcagcgata ccgttggatt tttcggcggc 61 tcatggaacg gccacacatt ggcttgttta cctataaaat ctgtaatgca ttgaaagaac 121 taacggaaag gatgattcgc ttacggcaag caatttgtga gcagctgccg catctcaaga 181 atgcctgcta tgccctggag gtgcctgtca agaaacaaca gctacagaat agccgacgtc 241 caactgtgga gtggattctg ccctctgcgt ttgcgcaaca ggaggtggaa ctactggact 301 cattgaagaa gcgcagattc gaggcctatg tggaaaacgt tcggattgta cctagcgctg 361 ggcgcagtgc agccaaaatc gagtttcagc tgcagccaca ggtctttgta gaacagctcc 421 tccaaactaa agagattgct ttacatcctt cgccctttgc tgcggaacac atagtggttg 481 agtacagctc gcccaacata gccaaaccct tccacgtggg ccacctgcgc tccacaatca 541 tcggcaatgt tctggccaac ctgcatgagc atttgggcta ccgcacaaca cggttgaact 601 atctggggga ttggggcacg caatttggac tactggtatt gggagttcaa ctgctgaatg 661 taagcgacaa agagatgcaa ctatccccaa tagaaacgct gtacaaatcc tacgtggccg 721 ccaacaaggc tgctgaacaa agacctgaaa tcgcgcaaca ggcgagggac ctcttcgccg 781 ccttggaagg aggaacggat aaatcaatgg ccaagaaatg gcagcaatac agaaactaca 841 ctatagagga tctatccaaa gtctataaca gattgggcgt tcacttcgat agctacgaat 901 gggaatccca gtactcccag cagcaaattc aggatgttct ggacaaactg cgaagcgctg 961 gactcctcca gccggagcac gatggtcgtg agattgtcgt ggtggacggc cgacgcattc 1021 ctgtgatcaa gagtaatgga tccactttgt acctggccag ggacatagct gccctgctgg 1081 agagactctc caggttccag ttctcacgct tgctctacgt cgtggacaat ggtcaagcgg 1141 atcattttaa tgcccttttt aaaacaacgg cagccctgga tgaccgccta agtctggaac 1201 agctgcaaca tgtgaaattt ggacgcattt atgggatgag cactcgtcag ggaaaggcaa 1261 tctttctaaa agatgtccta gatgaagcac gagacataat gcgggaaaag cgaaacataa 1321 gtgccactac cagagaaaat tacaatctgg atgatgaaca tgtatgtgat attttgggcg 1381 tgtcagccgt cctggtcaat gtccttaagc agcgaaggca acgagatcac gagttcagct 1441 ggcagcaggc actccaagta aatggtgaca caggaatcaa gcttcaatac acacactgcc 1501 gcctgcacag tttgctggat aatttccgag atgtagatct ggacgacatt aagcccgact 1561 ggaagcattt ctctacggag cctgcggatg ctttggatct gctctacgca ctggcacgtt 1621 tcgatcaaag cgtttggcaa tcgaaggaac aactggaggc ttgtgtcctt gtcaactatc 1681 tctttggatt gtgcaatgcc accagtcaag cgctgaaaag attgcctgtg aaacaagagt 1741 ccagcctaga gaagcaactc caacgcctgc ttctttttca cgctgccaaa aaaacactgc 1801 gacacggaat ggagctcctt ggcctgcgtc cactgaacca aatgtagacc aattagacct 1861 aaggcaccgc agttaacaca atttatattt attaaaacac ttcgctataa aatgcagcct 1921 agtgttgcag atgcacgtgc ccgtctagcg cttcttccac gtgtacttgc ggcgtgctcc 1981 ttcctgcccg aacttcttac gctcccgacg gcgatagtca cgtgtcagca ggccggctgc 2041 aacataaata gcaattagtg gcaataagtc aactgctgcg gctgcatagg agcctcattc 2101 acttacccag acgcattgac tcaatcatct cttgatcgac aaagctgcgc aaactcatgg 2161 cgatgcccca gcggatggct ccagcctgac cggaaggtcc gcctccctcg acgttggcct 2221 ccacatcgac tttgcccagc agctcgctaa attgcagcgg gaagagcagc tggaaaaaat 2281 cgagataacg aatcggcgaa tgagaatggt ataatgtcgt ggccgttaga tgtcaagttc 2341 gagcgcccga ggcagccatt gtacggatga tctctctgta ttcaaatgac gctgcgatag 2401 cgcttcctgt acaacaatgc cgatagataa tggcggaatg gttagccaaa ttaaatgtct 2461 ctcggccgcg gccactaaac tgcaacagat tgttgcatgt ccgtctggca attagtggac 2521 tcgtcaatcg agtgggtggg agctgaaagg ttcgtctgcc gggctaggtg tgatgcaaat 2581 tataagcgca ttatagcaat gcatcaagac cggataattg cggagccgcg ggcatgttca 2641 gcacgcgcta tcccgttaat aggttgaata atagttggct ttacgtaatt agtcgagttc 2701 ttttgagagt caattaaaga aggttgagta acgcaaaaag ctactttt //