Dbfetch
LOCUS NM_001275114 3556 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster glycogen binding subunit 76A, transcript variant B (Gbs-76A), mRNA. ACCESSION NM_001275114 VERSION NM_001275114.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3556) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3556) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3556) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3556) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3556) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3556) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3556) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3556) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3556) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3556) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3556) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3556) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3556) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3556) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3556) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3556) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3556) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3556) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3556) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3556) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3556) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 3556) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3556) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 3556) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 3556) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3556 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3556 /gene="Gbs-76A" /locus_tag="Dmel_CG9619" /gene_synonym="149039_at; CG9619; Dmel\CG9619; GBS-76A" /note="Glycogen binding subunit 76A" /map="76A3-76A5" /db_xref="FLYBASE:FBgn0036862" /db_xref="GeneID:40102" CDS 216..2261 /gene="Gbs-76A" /locus_tag="Dmel_CG9619" /gene_synonym="149039_at; CG9619; Dmel\CG9619; GBS-76A" /note="CG9619 gene product from transcript CG9619-RB; CG9619-PB; Gbs-76A-PB" /codon_start=1 /product="glycogen binding subunit 76A, isoform B" /protein_id="NP_001262043.1" /db_xref="FLYBASE:FBpp0303842" /db_xref="GeneID:40102" /db_xref="FLYBASE:FBgn0036862" /translation="MNDPGDIPLTHTSTPDSRPPCSIISIIPTIGMSSCRGRAEAFAR SLSSKLRTLGSQTTEEGEGNAEDEPIINGTSTNTWVNSHDSEQTVTDLQPLRHESDSF FDFDCELESPGSPVDECEYLRLIETASNTPHNSTAESGYACASMASSHSSSNDGPYFD ASASTSTAAAAQDQTLPASEHKEYVNTLQLNGKHGLANGVQEEQPAFQDDVQEDEAFL QAQILNELQKHSNSLTEVEQTKPEEGKLTNGHLEKVEELELKDVLEVAGTTNRAPKVI AAPQEVEAFADRSQEQSPNDRVQKESSQERVPEGTPFEGVQGESPSDRVQTDASDERV QEEISNDTVQVESNHKSATESISTEVTTLERSPEESRNDELSPDSGVDETDKSASNLT VDVDLAQIEQAKQDATEAVEKSGAPSRGTTVDTTDDEDDCRPQRIRRCSSLKTGKTPP GTPGRKKIVRFADVLGLDLADVKTFLDEIPTIPKSAFEDLEILESEPPLQLGPKSDKL LMPLFQQPGGLPKFLDAVREKQVSLENAAVTDNINQTISGSVRVRNLDFHKSVHIRYS LDGWRSYADLQANYVENSCDGFSDIFTFVLFGNSLHVGQRLEFAVRFQCKGQQFWDNN YGANYCFQCLPSSTHTAGGSTASPPSVATGAVSTGHSASLVGLLSPTAGDAWCSSFY" ORIGIN 1 cagggcacgc gaatacctac gggtccacca gcgcatatag taactatata tacccagaat 61 cggtgtatgt gggcgatatt tatgccacga cttttgacaa gcagttcttt ttattgctac 121 gccgacgagc gcgagtagaa cgctggccaa aacgccaaaa ggggaaagcc ttggaataat 181 attaaaacat cagatattcc gcagatcgga cgtaaatgaa cgatcccggc gatataccac 241 tgacacacac aagcactccg gacagcaggc cgccctgcag catcatttcc atcataccca 301 ccatagggat gtcctcatgt cgcggaagag ccgaggcatt cgcacggagt ctgtcctcca 361 agctgcgcac cttgggatca cagacaaccg aggagggcga gggcaacgcg gaggatgagc 421 cgatcataaa tggaaccagc acgaacacgt gggtcaactc gcacgactcg gagcagacgg 481 tgacggacct gcagccactg cgccatgagt ccgactcctt cttcgacttc gactgcgagc 541 tggagtcgcc ggggagtcct gtggacgagt gcgagtacct gcgcttgatc gaaactgcct 601 cgaatacgcc gcacaactct acggcggagt cgggctatgc ctgcgcttca atggccagca 661 gccatagtag cagcaatgat ggtccgtact ttgatgcatc cgcttccaca tccacagctg 721 cagctgccca ggatcagacg ctgccagcct cggaacacaa agagtatgta aataccctac 781 aactaaacgg aaagcatgga ctggccaatg gagtgcagga ggagcagcca gctttccagg 841 atgatgtgca ggaggacgag gccttcttgc aggcacagat cctcaatgag ctccagaagc 901 acagcaacag tttgacggaa gtggagcaga caaagcccga ggagggcaag ctcaccaatg 961 ggcatctcga gaaggtggag gagctggaac tgaaggacgt cctggaggta gctggtacta 1021 caaacagagc tccaaaggtg atcgccgctc cacaagaagt ggaagccttt gctgatagaa 1081 gccaagagca atcacctaat gacagagttc aaaaagaaag ctcccaggaa agggttccag 1141 aaggaactcc attcgaagga gtccaaggag aatctcctag cgacagagtc cagacggacg 1201 cgtccgatga aagggttcaa gaggaaattt ccaacgatac agttcaagtg gaatccaacc 1261 acaaatccgc cacagaatca atttccaccg aggtaaccac gttggaaaga tcaccagagg 1321 aaagcaggaa tgatgaactc tcgccagaca gtggtgtgga tgaaacagac aagtcggcca 1381 gtaatctcac cgtagatgtg gacctggccc aaatcgaaca ggccaaacag gatgccactg 1441 aggctgtgga aaagagtggt gcccccagtc ggggtaccac agtcgatacc acagatgatg 1501 aagacgattg tagaccacag cgcatcaggc gttgttcctc cctgaaaacg ggaaagacac 1561 cacccggaac tccgggtcgc aagaagatcg ttaggtttgc cgacgtcctt ggcttggatc 1621 tggccgatgt aaagaccttc ctggacgaga tacccaccat accgaaatcg gcgttcgagg 1681 acctggaaat actggagtcg gagccgccac ttcagctggg gcccaagtcc gacaagctat 1741 tgatgcctct gttccagcag ccaggaggcc tgcccaagtt cctcgatgcg gtccgggaga 1801 agcaggtgtc cctggagaac gctgccgtga cggacaacat caaccagacg atatccggat 1861 ctgtgcgtgt gcgcaatctg gactttcaca agtcggtgca cataaggtac tcgctggacg 1921 gatggagaag ctacgccgac ctgcaggcaa actacgtgga gaactcttgc gatggcttct 1981 ccgacatctt caccttcgtg ctgttcggta actcgctgca cgtgggccag aggctggagt 2041 tcgccgtaag gttccagtgc aaaggccaac agttctggga caacaactac ggggccaact 2101 actgcttcca gtgtttgccc agctcgacac ataccgccgg cggctccacg gcatcgcctc 2161 cgtctgtggc gactggcgcc gtatccaccg gccatagtgc cagtctggtc ggattgctaa 2221 gccccacggc gggcgatgcc tggtgcagct ccttctacta accggtggcg atgggcccgc 2281 actaaaggca ctagcatccc gtctagaatc caacaccctc tcccatgccc aatccaacga 2341 cacgacacca agatctggga aagtttccgg gccttgacgt ggtgtctatg tcccagtaag 2401 aaatcaaatc caagcagtcc catatgaccg cccagtcaga gatcacagat cagaatacca 2461 accttcgtgg ggctaactct tcattggggt gattggattt tttgttagaa aatccacaag 2521 gaactaagta tttttttggc aattcttaac gtaacgtatc aacacaactg gaactaattt 2581 ggaatgaaat tttcagtcaa aggcagatta agttttgata ttttggaact taagagctgt 2641 tattaacaac aagaactatt gtacgaaatg tcaagaaatt acataactcc cacaagaata 2701 tttcagtccc tgcacgtcga taaatcgaac caccctagcc ttccaaggac ggcaaacatt 2761 gtttatatat ttttatagaa tgaatggaaa agattgaagg gttagtgaag ggcaagagga 2821 gctgtaagag cgccacaaaa aaactaaaga atcaaaccag agtagtgcga actagaacaa 2881 aagccagcaa ggttcgaatg aatcccaaag atagttgtta gtcgtatgtt ataagaagag 2941 caagtgataa caaactaaaa ctcagatcag tttcttcaat gtcttcttct gtttttagtt 3001 acttttccca atttttattt ggtttgttcc taggtttgtt tgtcatgcga aagcgattgc 3061 cagttggatc gggctattaa gattgtgtat ctgccagata atgtatcatg atgatttaaa 3121 tgaatcagtt ttgtgaaaag attaattgcc attaatcaca gttctgaata tgagcttagc 3181 accattttaa tactttttgt tcggtaaaag cagatccgtt cgagcacaga gaccatgtca 3241 aaagttaact ataactaacc accatccact atctagtcaa ctcgagttta cttttgctac 3301 cttttgacta ttcgcagtca aaaaggatat tctccaatcc gatgatattt gtagcccgat 3361 cggaaaaacc ccttttagcc atcagacaca gcagacaagc cttaactttt gtttctctta 3421 attgttgata ttcttctaat gtttgatttt ttatatgctt taattttaat ttaaacgatt 3481 tgaatatttt ctatgtatat gttgatgcgt aatatatcta tcgtaatatt atataaatat 3541 atatacaaaa taaaat //