Dbfetch
LOCUS NM_001274511 3655 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster lamina ancestor (lama), transcript variant D, mRNA. ACCESSION NM_001274511 VERSION NM_001274511.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3655) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3655) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3655) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3655) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3655) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3655) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3655) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3655) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3655) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3655) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3655) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3655) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3655) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3655) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3655) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3655) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3655) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3655) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3655) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3655) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3655) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 3655) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3655) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 3655) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 3655) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3655 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3655 /gene="lama" /locus_tag="Dmel_CG10645" /gene_synonym="CG10645; Dmel\CG10645" /exception="dicistronic gene" /note="lamina ancestor" /map="64C12-64C13" /db_xref="FLYBASE:FBgn0016031" /db_xref="GeneID:38610" CDS 1302..3278 /gene="lama" /locus_tag="Dmel_CG10645" /gene_synonym="CG10645; Dmel\CG10645" /note="CG10645 gene product from transcript CG10645-RD; CG10645-PD; lama-PD" /codon_start=1 /product="lamina ancestor, isoform D" /protein_id="NP_001261440.1" /db_xref="FLYBASE:FBpp0305772" /db_xref="GeneID:38610" /db_xref="FLYBASE:FBgn0016031" /translation="MLKVVGASWQKTRIGTYILIGAGLLVIGAFFIGYMERPEYDGTY CATALWTKQVGFQIENWKQQNDLVNIPTGVGRICYKDSVYENGWAQIEVETQRTYPDW VQAYAAGMLEGSLTWRNIYNQWSNTISSSCERDESTQKFCGWLRDLLTTNYHRLKRQT EKAENDHYWHQLHLFITQLEGLETGYKRGASRARSDLEEEIPFSDFLLMNAAADIQDL KIYYENYELQNSTEHTEEPGTDQPKNFFLPSATMLTKIVQEEESPQVLQLLFGHSTAG SYSSMLRIQKRYKFHYHFSSKLRSNTVPGVDITFTGYPGILGSTDDFYTIKGRHLHAI VGGVGIKNENLQLWKTVDPKKMVPLVARVMAANRISQNRQTWASAMSRHPFTGAKQWI TVDLNKMKVQDNLYNVLEGDDKHDDAPVVLNEKDRTAIQQRHDQLRDMVWIAEQLPGM MTKKDVTQGFLVPGNTSWLANGVPYFKNVLELSGVNYSEDQQLTVADEEELTSLASVD KYLRTHGFRGDLLGSQESIAYGNIDLKLFSYNARLGISDFHAFAGPVFLRFQHTQPRT LEDEGQDGGVPPAASMGDERLSVSIEDADSLAEMELITERRSVRNDMRAIAMRKIGSG PFKWSEMSPVEEGGGHEGHPDEWNFDKVSPKWAW" ORIGIN 1 atcagtctgt ccgctgcgca tagtcgaaac ggaaggaaaa tcgctttaat tctctgtgat 61 ctgtgtttgc gtgttgaact cgagttttca gttcgttgtt atctgttcaa tttcatttgg 121 atgtgcaatt gccgacgcta aaaatatata cgtaacgcgt gcaagaaatt gagagtattg 181 cccgacgctc aactaaatta caaaaaagaa attttatttc atatataaac gccacgttct 241 cgcgttctaa caaactcccc aataaaaaac acactcaagc agcacattac atatactcga 301 ccacgctgta taattagtta ctagccgttg atatttccaa tacgccgcat agcaacaata 361 accatatcaa acatttcgat aatctgatgt gacacaagtt tttgcatcga aatagccgtg 421 tgtgtgtgtg tgtgtgtgtt tggttcccat tcgccgccaa tcaaaccaat cgcattgaga 481 gtgtaatccg ggaaaagtta tacacaccta aacctgcgcc ttttcaatgt agcccttcat 541 ggataattaa cacgtgagcg ttgtgtgact atatagcaaa atcgtgttaa aatcgtgttc 601 gcagtggctg aatttagcag cgatccaacg aatagtgtca tctcgaaccc agacaccccc 661 cacaccccct gcgaatttct cttatttgtc ggcgcggaat ttgcctgagt cacgagccat 721 ttcaattttc cgatatctgt atctgaatcg taacagatca catgagtgtc gggcaggcgg 781 ttgacatggg tgaggaccca gtaaacagag ctccacgcga gatactcact gaacttcaag 841 cttcttcaaa tgggttgact tgtgatattg ctgcttcctg gacccgggaa acaaaaggga 901 tacaaattga acctcaaaag acatagccaa gctgcaataa aaccatcgcc aaaccaccgc 961 cgccatttaa agtcaatagt tagcacgaat ataaccacct agaaaccgtt ggaatctctg 1021 cttgaaagca gcgcaccacc catgaaccaa tcggccaagg cgctcaacag cgtggccacc 1081 gagatcagca cctcctgctc ctccagcacc ttcaccaacc atccacagaa ccacctgcac 1141 actggccacc tgattgccca tcgtcttgga cactcctacg ccgctcgtgc cgatcacaat 1201 tatctgggat aagttctgca attggaatct gactggtgaa acacgtttct cgagaggatt 1261 ttccattttt gcatcgtagc agcttcacga cggccggcac aatgttaaaa gtcgttggtg 1321 catcgtggca aaaaacgcgg atagggacct acatcctaat cggtgctggt ctcttggtca 1381 tcggagcctt cttcattgga tatatggaga ggccggagta cgatggcacc tactgtgcca 1441 ccgctctgtg gaccaagcag gtgggcttcc agattgaaaa ctggaagcag cagaatgatc 1501 tggtcaacat tcccacgggt gttggcagga tttgttataa ggattcggtt tatgagaatg 1561 gttgggccca aatcgaagtg gagacgcaaa gaacttatcc ggattgggtg caggcctatg 1621 ccgccggaat gctggagggc tcgctgacct ggaggaacat ctacaatcag tggtccaata 1681 ccatttcctc ttcttgcgag cgcgatgaaa gcacccagaa attctgcggt tggctcaggg 1741 accttttgac caccaactac catcgcctga agaggcagac tgaaaaggct gagaatgatc 1801 actactggca tcagctgcat ctgttcatca cccagctgga gggcctggaa actggctaca 1861 agcgaggagc atcccgggca cgatccgact tggaggagga gataccattt tccgattttc 1921 tgctgatgaa cgccgctgcc gatattcagg atctcaagat ctattacgag aactatgagc 1981 tgcagaatag tacggaacat accgaggaac ccggaacgga tcagccaaag aacttctttc 2041 tgccgagtgc caccatgctg acgaagatcg tccaggagga ggagtcgccg caggtactac 2101 agttgctctt tggtcacagc acggctggaa gttactcctc catgttgaga atccagaagc 2161 ggtacaagtt tcactatcac ttctcgtcga aactgcggag taacacggtg cccggtgtgg 2221 atatcacttt cactggttat cctggcattc tcggatccac cgatgacttc tacaccatca 2281 agggtcgtca tctgcatgca atcgtaggag gagtgggcat caagaacgag aatctgcagc 2341 tgtggaagac ggtggatccg aagaagatgg tgcccttggt ggctcgtgta atggccgcca 2401 atcggatatc ccagaatcgt cagacttggg ccagtgccat gtccagacat ccatttacgg 2461 gagccaagca gtggatcacc gttgatctga acaagatgaa ggtgcaggat aatctgtaca 2521 atgtccttga aggcgatgac aagcatgacg atgctccagt agtgctgaac gaaaaggata 2581 ggacagccat ccagcagagg cacgatcagc taagggatat ggtttggatt gccgagcagc 2641 tgccgggcat gatgaccaaa aaggatgtta ctcagggatt cctggtgccc ggcaacacgt 2701 cctggctggc caatggagtg ccgtatttca aaaatgtcct ggagctaagc ggcgtcaact 2761 acagcgagga tcaacagctg acggtggccg atgaggagga gctgaccagt ctggcgtcgg 2821 tggataagta tttgcggact catggattcc gtggtgatct gctgggcagc caggagtcga 2881 ttgcctatgg caacatagat ctgaaattgt tctcctacaa tgcccgactg ggcatcagcg 2941 atttccatgc ctttgcgggt ccagtctttc tgagattcca acatactcag cccaggactc 3001 tggaggatga gggccaggat ggtggtgttc cacccgccgc atccatgggc gacgaacggc 3061 tcagcgtgag catcgaggat gcagatagtc tggcggaaat ggaactcatc acggaacggc 3121 gatctgtgcg aaatgatatg agagccattg ccatgcgaaa gattggcagc ggacccttca 3181 agtggtcaga gatgagtccc gtggaggagg gcggtggcca tgaggggcat cctgatgagt 3241 ggaactttga caaggtctcg ccgaagtggg cgtggtaggc gctgaggagc aggtttcttc 3301 ttttaacccg tagaacccaa tcgaatttgt acccaaaacc cacctccatc cattttgaaa 3361 actggaaagc aataattgtc ctagatttgg taattagtgt cctgtcttgt ctcgtataat 3421 ttgtgtgttc ctagttggta catatcttac gtccatagtc ttctagtgtc tactgtactt 3481 atgtatgtat gcgtgtccaa tcgattattg tcttccagct gtacagcttt ttattttccg 3541 taggtctttt gtaaattagc aacgaaattg gaaatatatt ttttagcaac aaatttttgt 3601 actttagtaa ctattaacaa attgtaaaga aaataaaaac aaaatcatga aaaac //