Dbfetch
LOCUS NM_001274490 3851 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant H (CG42540), mRNA. ACCESSION NM_001274490 VERSION NM_001274490.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3851) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3851) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3851) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3851) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3851) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3851) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3851) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3851) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3851) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3851) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3851) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3851) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3851) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3851) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3851) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3851) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3851) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3851) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3851) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3851) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3851) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 3851) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3851) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 3851) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 3851) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3851 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3851 /gene="CG42540" /locus_tag="Dmel_CG42540" /old_locus_tag="Dmel_CG13719" /old_locus_tag="Dmel_CG32245" /gene_synonym="CG13718; CG13719; CG32245; CG7468; Dmel\CG42540" /map="64B10-64B11" /db_xref="FLYBASE:FBgn0260657" /db_xref="GeneID:38562" CDS 730..1911 /gene="CG42540" /locus_tag="Dmel_CG42540" /old_locus_tag="Dmel_CG13719" /old_locus_tag="Dmel_CG32245" /gene_synonym="CG13718; CG13719; CG32245; CG7468; Dmel\CG42540" /note="CG42540 gene product from transcript CG42540-RH; CG42540-PH" /codon_start=1 /product="uncharacterized protein, isoform H" /protein_id="NP_001261419.1" /db_xref="FLYBASE:FBpp0305760" /db_xref="GeneID:38562" /db_xref="FLYBASE:FBgn0260657" /translation="MVEEFLEKLPEIDTRYEDIVPMEQVSSMVSNGGGSVAMQRDDEY RNRIMKTDEEISDKASTCGKLLIFLSVALVIMTLPFSLFVCFKVVQEYERAVIFRLGR LMQGGAKGPGIFFILPCIDSYARVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSN ATVSIANVENAHHSTRLLAQTTLRNTMGTRHLHEILSERMTISGTMQVQLDEATDAWG IKVERVEIKDVRLPVQLQRAMAAEAEAAREARAKVIAAEGEQKASRALREASEVIGDS PAALQLRYLQTLNTISAEKNSTIVFPLPIDLITYFLKTNEATTQQNARAAAAAIGNTP PPLQLAPQQQMGQQQQPQYQQPQQQQQQYQPQQQQQQQQQQPQQQDQLYQQGQQISSA M" ORIGIN 1 gcagtttgtt gttagtgctg aacggcagtg aacggacagc gcttgttggt tgttcgtctc 61 tcgcacacat agggcccgaa aaagttgagc tgccgttttt cgagggagtt ttggcacatg 121 ttttgtttcc gcaacagctt cttttccact ccgcttcccg ataatattgc atttttgaaa 181 acttcgcttg tttgcccatt tgtgtgtggg ctaaaactac tgaccgaatc gagtgccaag 241 tgaccagaaa tacacaacac acaccccagt tcgccatcac actagagggg ctaagacaat 301 cacacaagac atcaacggaa agtgcaaaaa ccttagatta aacttagatc gactgccaaa 361 actcaggcag tccatacagc cacaaaaagg acagcaacct acgaatttct cagtgtgtga 421 catccaaatt ctatattcta caaaaaagtc aataagcaaa aaacaacaac aacaggtgtt 481 tcagctttat ctattgtcaa aaccaaagag ccacaaaata attaagccca acagcggcaa 541 ttagcatttg tccataattg ataagcagaa actttaattt agtgcgtgtc aatttgaata 601 gtatcgtatc ctgcgtgctg actgtgtgtg tgcgtgtgtg tgcgagtgcg tgagctagtg 661 tgtgtgtgtg tgattgcgtg ggggcttgta tgtgtgtggc tgctgtgctc ggcgcacgtg 721 caacgaaaga tggtcgagga gttcctggag aagttgccag aaatcgacac acgctacgag 781 gatattgtgc ccatggaaca agtgagctcg atggtctcca atggcggtgg cagcgtggcc 841 atgcagcgcg atgatgagta caggaatcgg atcatgaaaa cggacgagga aatcagcgat 901 aaggcatcaa catgcggaaa attgctaata tttctttccg tggctcttgt gataatgacg 961 ctacccttca gtctctttgt ttgctttaag gtggtgcagg agtacgagcg cgcggttatc 1021 ttccgtttgg gtcgtcttat gcagggcggt gccaagggcc caggtatctt cttcatcctg 1081 ccctgcattg actcctatgc ccgtgtggac ttgcgtactc gcacatacga tgtgccaccg 1141 caggaggttc tcacaaagga tagcgttacg gtttcggtgg atgcagtggt ttactatcgg 1201 gtatcaaatg cgaccgtctc tatcgcgaac gtggagaatg ctcaccattc gaccaggcta 1261 ctggcacaga ctactctacg aaacacaatg ggaactcggc atttgcatga gatactcagc 1321 gagcgtatga cgatttccgg cacaatgcag gttcaactcg acgaagccac cgatgcctgg 1381 ggcatcaaag ttgaacgtgt ggaaatcaag gacgtgcgtc tgccggtgca actgcaacgt 1441 gccatggccg cggaggcaga agccgcccgg gaagcccgcg ccaaagtcat cgccgccgaa 1501 ggagaacaga aggcgtcgag ggctcttcgc gaggcgtccg aggtgattgg cgattcgccg 1561 gctgccctcc aactgcgcta ccttcagaca ctcaacacca tatctgcgga gaagaactcg 1621 acgattgtgt tcccgctgcc catcgattta ataacatatt tcctgaagac caacgaggcc 1681 acaacgcagc aaaatgcccg agcagctgcg gcagcaattg gcaacacacc gccgccattg 1741 caactggcgc cgcagcagca gatggggcag cagcaacagc cgcagtacca acagccgcag 1801 cagcagcagc agcagtacca accgcagcag caacaacagc agcagcagca acagccgcag 1861 cagcaagatc aactctatca acaggggcag cagatctcat cagccatgta aatcagctta 1921 agatcacaaa agtttcggct tcgtcgactc taaaatgtcc tgcacaatgt ttgaaaaata 1981 tcctgttagc ataaaaatac atcaggaatt tgtatcatat atgcatttcc tttaaagaaa 2041 tgcatatcca aatatcgata ggaaaaagtg taactgaaca ggcttttttc tccagtcgaa 2101 aatattgctt cattttcaaa ggctgggcaa ctctgacgac caacttaaaa atgtgtatct 2161 caaatcccca tatccctttc ccctgagatg cacattttga gttactatcc tttaggaaat 2221 gctggaaagc tggctatgta attcttgtta gggaatgtaa tgtaatgcat ttttctgggc 2281 tttttaagca gcagctctaa atataattgt gcagagcgtt tcaacagaaa aacccaagaa 2341 caaaaaacaa ccaacggaaa caacgattca aaagaatcaa aaatcttagt tcataacacc 2401 gataagtgcg attcgaatgc gttagtcgac tgcagatcct tcaagaaaga aacgagggat 2461 ctgaggtcaa atagatacaa agatacaaac ctagactagt ttcatacgag gcgaaaatag 2521 agtttaatat ttgtagcttt acgaccagag gatgcaattc taaatattaa atgtaggaac 2581 tagcggtgca actcaaattt agcacacaca acacaaaaat caaagtaaaa tacttactat 2641 taaaatcata ccatatgatg tgcggtcgtt caggtgaaaa ttctaaaacc aaccagtttt 2701 gaaagtcttg aattgtgaaa tttgaaatag tcaaaaatgg ttggtttggt tttgtctttt 2761 cacgaactga gcgagccaca gattattgtt tgtttttctc tcaatattcc acgaaggtcc 2821 gtttccttgc attctagtta agtgttagac cattttgtta ctttaattac gtattttatt 2881 aaaaatttct ttttaataat aaattaatta actgatctaa gaaaacgggc cgtcgttgaa 2941 ccaaaatatt caatgaactg ttgacaaagg cgttttgtaa ttgtttatcc gtaagatggt 3001 taccctgtta attatggatg aatctgatta cttaaaatat tgctgtatac ttagctatgc 3061 aaatttaact ttaagtcgtg atcaggttag ttcgtataaa atagagttac tgttgttcaa 3121 aaccaattaa aactttatag gactttaata actctcatta tgaacagttg tactcatatg 3181 gtacactcca actaatacaa ctgttaatct gtttccactg gagctaatcc aggcatctag 3241 aggatttttt ttgatcatag tgggtttaga tatctattaa aaatatcgat cagttttaaa 3301 agttatctga acccacgcta acagatgaaa tcaactagtc agcaacgttc gtaggtccaa 3361 aatacgaatg ccaaacaata aataagagta atacgaattt attgtacata caataaacaa 3421 atagagcatt taagccgtac agaactgttt taccaattga caccttaatt aatattgcat 3481 attcgtatcg ggtatacacc acacacaaac acatacacag gatcgtagaa ggtagcctct 3541 ctcgaagtag aatccgtcta cttgaatatg tctgaagtac gaagaagtcg acgaaagaaa 3601 tgcatcttat gctagaatgt atttgcaaca cgaaaaagtt tactttttag cgcacttcat 3661 ggaatacgaa acgagttatt gatataataa tatatataca tatgcaagca taacgaacta 3721 catattatgt acaattttgc ctttgaaaat ttttaaacag aaacgatttc attatccaca 3781 tacaattaga tttatgtgta aaggaacaat aaaatttctt caactttttt ggtatccaaa 3841 agagcaaaaa c //