Dbfetch
LOCUS NM_001274444 3575 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster Ecdysone-induced protein 63E (Eip63E), transcript variant N, mRNA. ACCESSION NM_001274444 VERSION NM_001274444.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3575) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3575) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3575) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3575) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3575) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3575) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3575) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3575) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3575) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3575) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3575) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3575) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3575) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3575) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3575) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3575) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3575) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3575) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3575) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3575) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3575) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 3575) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3575) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 3575) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 3575) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3575 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3575 /gene="Eip63E" /locus_tag="Dmel_CG10579" /gene_synonym="cdc2-63E; CG10579; Dmel\CG10579; EIP63E; L63; Pftaire; PFTAIRE" /note="Ecdysone-induced protein 63E" /map="63E3-63E5" /db_xref="FLYBASE:FBgn0005640" /db_xref="GeneID:38433" CDS 1024..2640 /gene="Eip63E" /locus_tag="Dmel_CG10579" /gene_synonym="cdc2-63E; CG10579; Dmel\CG10579; EIP63E; L63; Pftaire; PFTAIRE" /EC_number="2.7.11.1" /EC_number="2.7.11.22" /note="CG10579 gene product from transcript CG10579-RN; CG10579-PN; Eip63E-PN; PFTAIRE" /codon_start=1 /transl_except=(pos:2590..2592,aa:OTHER) /product="Ecdysone-induced protein 63E, isoform N" /protein_id="NP_001261373.1" /db_xref="FLYBASE:FBpp0303101" /db_xref="GeneID:38433" /db_xref="FLYBASE:FBgn0005640" /translation="MATTTTTTTTTGATNAKDGVTMREKKGGALQKLKKRLSHSFGRL TISREDGDESTHHHHHHHHHRGGHGGHHNHGNKVPYNGYNSEEYLDRLEPNGNIPADK TNCRYGAQESAKNDNNKPQDWRSTDSTDHHDRVQRQLSVSSDSKLLDEDIREEMKYHS HVVMRPKKPPRPKSEVFLNKQETHPRRKRFSAFGGDSPFGKQEAYVKLEPLGEGSYAT VYKGFSKLTYQRVALKEIRLQEEEGAPFTAIREASLLKELKHSNIVTLHDIVHTRETL TFVFEYVNTDLSQYMEKHPGGLDHRNVRLFLFQLLRGLSYCHKRRVLHRDVKPQNLLI SDCGELKLADFGLARAKSVPSHTYSHEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIF VEMVTGMPTFPGIRDTYDQLDKIFKLLGTPTEDTWPGVTHFPGYKPHKLGFYRPRKLG HNFPRLYDIIEGETIANGFLQLNPEQRLGADDALQHPYFAQLPKKLYELPDETSIFTV EGVQLYTEPNRQNKXKLKQVLSVDGVRFYC" ORIGIN 1 cccctgcctg gccacactgg cgatgtggtg tgaccaaatt cgtgctcgct ccgcgagtcg 61 ccgtcaaaaa acaactgtga aattgcacaa gaaactaaac aaataatcgc gtaaaattac 121 cgaaaacatg tgcagcggcc gttagcagcg tgcggcaact aatcgagcca gtgaaaacgt 181 gcaggtgcga gcgagaaaac acgcgtacgc gtcactagca acaacaacaa acacacagtg 241 caccaactct cgcataagca cgcacacaca cacacacaca cgcgcgcaca catgcataaa 301 caccgacgca catgcaacaa aaataaaata aaaacaaaag agcaagcgaa ataataacag 361 aaataaattt gataaattca attataaatt aaggcagctg cttgtgtgct aagcaaaaat 421 attaaataga aagtcttggc cacttaagtg aaccaaaatt agagaagcag cagagtgccc 481 aaaatatcaa tatatagatt tgatatctaa aagtaacgaa agttaactta aaaccttaat 541 ggtggacaat ggatcaaaaa aacaaaatcc ctactaaaat aaattccaaa tacttgctaa 601 atgaatgaaa cccgcaaata aagtcgattc ttaccaagat aaccaaaact agcttcatga 661 cttttaattc ttgttgtttt aatttttgtg cacttcctgg ttacggaaca cctggaaaac 721 cccatcctcg cctttttcca cgctgattaa caaatctcgc gtttttcccc cctatcagct 781 gacatacgca tacaaagccc atccagttgc caccccctac ttcttgcacc tgtaaagaac 841 aggtgactaa tacactgctc gcgaagtttg tcagctgctg gcgccgtgga agcaacaaca 901 acaaaactaa ccacatccac atcggcaaca acaacatcgg ctttctacag agcagcgacg 961 tcggcgtcgg cagaggcctc tgcctgcaca acaccagcaa caataaaatc aaaaactaaa 1021 actatggcca ccaccaccac aacaacaaca acaacggggg caacaaatgc taaagatggc 1081 gtcacaatgc gcgagaaaaa gggaggagcc cttcagaagc tcaagaagag actttcgcac 1141 agcttcggca gattaacaat ttcccgcgaa gatggcgacg agtcgacgca ccaccatcac 1201 caccaccatc atcatcgcgg tggacatggc gggcaccaca accacggtaa caaagttcca 1261 tacaacggct acaattcgga ggaatacttg gaccgactcg aaccgaatgg caatataccc 1321 gctgacaaga caaattgcag atatggagca caagagtctg cgaaaaatga taataacaaa 1381 ccacaagact ggcgcagcac ggacagcacc gaccaccacg atcgcgtcca gagacagctt 1441 tccgtgtcct ccgacagcaa gttgctcgac gaggacattc gcgaggagat gaagtaccat 1501 tcgcacgtgg tcatgcgtcc caagaagccg cccagaccca aatccgaggt ctttctgaac 1561 aaacaggaaa cgcatccgcg ccggaaacga ttcagtgcat ttggtggcga ctccccattt 1621 ggcaagcagg aggcctatgt taaactcgag ccgctgggcg aaggctccta tgcgacggtc 1681 tacaaaggat ttagcaaatt aacctaccag cgggtggcgc tgaaggagat tcgcctgcag 1741 gaggaggagg gagcaccctt caccgcgatt cgcgaggcct cgctgctgaa agaactgaaa 1801 cacagcaaca tcgtcacgct gcacgacatt gtccacacgc gcgagacgct gacctttgtc 1861 tttgaatatg tgaatacgga tctgtcgcaa tacatggaga agcatccggg cggcctggat 1921 catcgcaacg tgcgcctgtt cctcttccag ctgctccgtg gactctccta ctgccacaag 1981 cggcgtgtcc tccatcggga tgtcaagccg cagaacctgc ttattagcga ctgcggcgaa 2041 ctgaagttgg ccgatttcgg actggccagg gccaagagcg tgcccagcca cacctactcc 2101 cacgaggtgg tcacgttatg gtaccgccct ccagatgtcc tgctgggcag cacggagtac 2161 tcgacctcgc tggacatgtg gggcgtgggc tgcatcttcg tggagatggt gaccgggatg 2221 ccgacgtttc cgggcatacg tgatacctac gatcagctgg acaagatatt caaattgctg 2281 ggcacgccca ccgaggacac gtggccggga gtcacccact ttcccggcta caagccacac 2341 aagctgggtt tctatcgacc acggaaactg ggtcacaact tcccacggct atacgacatc 2401 atcgagggcg agacgatagc taacggcttc ctgcaactga atccggagca gcgtttgggc 2461 gccgatgatg cactgcagca tccgtacttt gcgcagttgc caaagaaact ctacgaattg 2521 ccagacgaaa cctcaatttt caccgtggaa ggcgtgcagc tttacacgga gccaaatcga 2581 cagaataaat gaaaattaaa gcaagtcctc tctgtggatg gcgtacgttt ctactgttag 2641 gatccaaatc acccaatcaa catcctcctg gactatcaat ctgtcaatca acctatcgca 2701 tcatccagca atcgacagcc atatataatg caagaggaac ttctcgcccg cgcagaagtt 2761 ttgtactata attctatgat actttttagt tattagttcg atttcgcagt gagttagctg 2821 agggagttta gcagaagaca cggcaccaac ggcagcattt tattttcagt caaattgctt 2881 aaagttagtt tagatttctg tagatttctc gccatcctgc agccgcgtcg taaaggatac 2941 tcagtttagt caaagcgcag acacgttttt ctgtattctt ttgtaagcta acaaaaattt 3001 acatttaatg gtagctttta gtgagtgaat tgcctctgtg gattacgcaa tattttcgat 3061 tgcaatgagt gagagataat catcatgatg tttgatatgc tcgtgtgtat ttcgttttca 3121 ttattttttc ctttagtttt tattcgatat tttctacgcg aatgttcgac tgcggagtgt 3181 tgattaaaat tgcaaatata aattcaattg gttactgctt taatagagtg caattaataa 3241 aaattaatga attggcggca atgcgccaaa aaaaaaaaat gaatcaatta atcaaataat 3301 gatgtgctca aaaggtgtac gattatttcc aagcaattac tcaacttaaa attatgcaca 3361 ttttcaaatt aagacttgtt tagttctgct cacagctcct tttaattgtt ggattgtata 3421 attttgtaac gtttcctttg tcattttaaa atatatcagt tcgccgcgct gtttaagtga 3481 taattttata actattaaat gaatttatgt aaaaagcaag taaatcaatt attaacaata 3541 tgtaaaacaa taaatttaaa ccatttatac aattt //