Dbfetch
LOCUS NM_001274328 3483 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant B (CG12084), mRNA. ACCESSION NM_001274328 VERSION NM_001274328.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3483) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3483) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3483) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3483) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3483) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3483) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3483) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3483) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3483) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3483) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3483) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3483) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3483) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3483) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3483) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3483) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3483) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3483) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3483) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3483) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3483) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 3483) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3483) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 3483) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 3483) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3483 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3483 /gene="CG12084" /locus_tag="Dmel_CG12084" /gene_synonym="BEST:LD02105; Dmel\CG12084; LD02105" /map="62A2-62A2" /db_xref="FLYBASE:FBgn0043458" /db_xref="GeneID:192509" CDS 383..2680 /gene="CG12084" /locus_tag="Dmel_CG12084" /gene_synonym="BEST:LD02105; Dmel\CG12084; LD02105" /note="CG12084 gene product from transcript CG12084-RB; CG12084-PB" /codon_start=1 /product="uncharacterized protein, isoform B" /protein_id="NP_001261257.1" /db_xref="FLYBASE:FBpp0304902" /db_xref="GeneID:192509" /db_xref="FLYBASE:FBgn0043458" /translation="MSCKVRLMEDGSLDEEPLTLKEIAYQKLCNNLDIISSHRPDGQR GLNPGIVLPNEICDGFLENYQRFNRPLDDSVIRLFEDTHRTSLKIVNLRNSTLSSIGL ETLMRHKLFALSLWYCDMISVGSHHLLAHYGDSLRSLELGISSHLLQYAEPNEKEPVD FQLTCPHLRRLVLNGVVMHHRLQFAHLHDLGHLDLTSCVLANFSLEALGSLPNLHTLI LFNVWPIANQLHAICCLRRLCTLDISISSSGNGHGTYDLPDQTLEMLMDNLRHLTHLD ISGTNLAGNGVATKESTTTSGMQQSPKMEQHFALTDIPGLASRTQRPLQFLGLYHTAH WACKRHDIPALEVAGDANEQQILTAARYYHDRPVLLTRVLNDLYHLFRFENCKDIHTA LDVVLSAMDRHLKFKHMQISGSATLFYIVKGRDRSKFGALLRNHIIRTLLNGMEMHIT DDTMLRNGYLTLTQFHMPVDVLFEYERLIKILLHGVSKTEQEGFVQRIAIYLLNTLAC QVDGRQKLFLGELGVVSTMFTLIKDRLTRSVFDDVMEVAWSTMWNVTDETAINCKRFL DGRGMEYFLKCLHTFPDRDELLRNMMGLLGNVAEVKWLRPKLMTQEFIEVFARLLDSL SDGIEVSYNAAGVLAHIASDGADAWTIKTPSREHVLERMVAAIQRWNIKSERNINYRS FEPILSLVRCYETPQCQHWAVWALANLTQVYPEKYCKLVEQENGIQILNELIEHESPY CEIKRIARLVIEQCDSGSERMVVDG" ORIGIN 1 ggagcgcatt cggcatctgg tcacactggc gagaagaaag aaaatagaaa ccaaaataat 61 gaagtgattt ccatacgcaa atcgtaaaat tagagaataa caattggaat tttctggcgc 121 tcgagtgccg cgtgtaacgg taaaacgctg cgcaatcgcg gaaaaatcgc tcgaagttcg 181 gaaaatccgt tggcaaaacg aacgcaaaga cagagcagca gtggcaaagc aaacgcaaaa 241 gcaaagacaa acgcaacgac agaagcaaaa gcagcgaggg attttggagg ctgctttttt 301 ggggcgacac taaagcaaaa taaaagacaa cagggccatt attgaggccc cactggcgga 361 gcacaagaac tgcggcccca agatgagctg caaggtgcgg ctgatggagg acggctcgct 421 ggacgaggag ccgctgaccc tcaaggagat cgcctaccag aagctgtgca acaatctgga 481 catcattagc agccaccggc cagatggcca gcgcggcctc aatccgggca ttgtgctgcc 541 caacgagatc tgcgacggct tcctcgagaa ctatcagcga ttcaatcgcc cgctggacga 601 cagcgtcatc cgcctcttcg aggacacaca ccgcacttcg ctcaagatcg tcaatcttcg 661 caacagcacc ctaagcagta taggcttgga gactctgatg cggcacaaac tgttcgcttt 721 gtccttgtgg tactgtgaca tgatatccgt tggttcccac caccttctgg cccactacgg 781 cgacagtctg cgatccctgg aattgggcat cagttcccat ctgctgcagt acgcggagcc 841 caacgagaag gagccagtgg acttccagtt gacttgtccg catctgcggc ggctggtgct 901 caacggtgtt gtgatgcacc accgcctgca gttcgctcac ctccacgact tgggccacct 961 ggacctgacc tcctgcgtgc tggccaactt cagccttgag gcattgggct cgctgcccaa 1021 tctgcacacg ctcatcctgt tcaatgtgtg gcccatcgcc aaccagctgc atgcgatctg 1081 ctgcctgagg cgtctgtgca cactggacat atccatctcc agttccggaa atggccacgg 1141 cacctacgac ctgcccgatc agacgctgga gatgctgatg gacaacttgc gacatctcac 1201 acatttggat atctctggca cgaatttggc cggcaacggt gtggccacca aggagtcgac 1261 aactaccagt ggcatgcagc agagccccaa aatggagcaa cactttgccc tcacagacat 1321 cccggggcta gcgtcccgca cccagcgacc gctgcagttc ctaggcctct atcacacggc 1381 ccactgggcc tgcaaaagac acgatattcc agctttggag gtagctggcg atgccaacga 1441 gcagcaaatc cttactgcgg cgcgttatta ccacgacaga ccagtgcttc tgacaagagt 1501 tctcaacgac ttgtaccatc tcttccgctt cgagaactgc aaggacatac acacagcact 1561 ggatgttgtg ctctccgcca tggatcggca tctcaagttc aagcacatgc aaatctccgg 1621 cagtgccacg ctgttctaca ttgtcaaggg cagggatcga tccaagtttg gagcactact 1681 gcgcaatcac atcattcgca cgctgctcaa tggcatggag atgcacatca ccgacgacac 1741 catgctgcgg aatggttacc tcacgctcac ccagtttcac atgccagtcg atgtgctctt 1801 cgagtacgag cgtctcatca agatcctgct gcacggcgtt tctaagacgg agcaagaggg 1861 atttgtccag cgcatagcaa tctacctgct gaacacactc gcttgccagg tggatgggcg 1921 acagaagctc ttcctgggcg agttgggcgt agttagtacc atgttcacgt tgataaagga 1981 tcggctgact cgctccgttt tcgacgatgt gatggaggtg gcttggtcca ccatgtggaa 2041 cgtaaccgat gagactgcta ttaattgtaa gagattcctc gatggacgtg gcatggagta 2101 tttccttaag tgtttacata ccttcccgga tcgtgacgag ctgttgcgca acatgatggg 2161 cctgctgggc aatgtggccg aggtgaagtg gctgcggccc aagctgatga cccaggagtt 2221 cattgaggtg tttgcccgtc tgctggactc cctgagcgat ggcatcgagg tcagctacaa 2281 tgcggctgga gtgctggcgc acattgcctc ggacggagcg gatgcctgga cgatcaagac 2341 gcccagccgg gagcacgtgc tggagcgcat ggtggccgcc attcagcggt ggaacatcaa 2401 gagcgagcgg aacatcaact accgcagctt tgagccgatc ctcagcctgg tgcgctgcta 2461 cgagacgccc cagtgccaac attgggctgt ttgggccctg gccaatctga cacaggttta 2521 tcccgaaaaa tattgcaagc tggtggagca ggagaacggc atccagatcc tcaacgagct 2581 aatcgagcac gagagtccct actgcgagat caagcgcatc gctcgcctgg tcatagagca 2641 gtgcgactcc ggatcggaac gcatggtcgt cgacggctaa gcggatattt aggataacac 2701 gtagctttag gagtcgagtt tgttgtaatg ttttttttct gcttcctctg tttcccgttt 2761 taaagcaagt gcatgtgtta tgtggttcaa gagattcttc cttgactttt atgtttacag 2821 cgagagcagc agatacatag atgcaagttt aaactatgcg agagttaagc aactaaatct 2881 aatgatgcag aaatattcga taattacata attactagat tatatatgta tatgatgtat 2941 cacatgttgt aagccagcga tctttttagg ccttcagaag tgtaaatatt gttaaaaccg 3001 gaaagaggaa gacattggag tagcaagcaa ggctgctgga gattaaataa atccttaaga 3061 attgaattcc ccgtggatcg atagttcttt ctctagccac atagacgagt gtatggaatc 3121 tgttctttga attgtggtca tcatacgatg ctcacttaac ccccccacat ttgctgtgct 3181 ttcgcatcac gaacccaagt agctgcaagt tcaggatcgg atcgttcaaa ataatctagc 3241 tatataatct agaccactag gctaggctta agcaactgta aatatattgc aagtaacagt 3301 tttgaaagtt ctgcgcttgg cattaatatt tataacagtg tacgttacca ttagttacct 3361 tacattacgt atatacatat atataatttg attcgtaagc gacatcacgc ctgtgtctta 3421 ccaaagaccc tagaataaca agatgcgtaa cggccataca ttggtttggc actatgcagc 3481 cac //