Dbfetch
LOCUS NM_001274169 2491 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster Kip1 ubiquitination-promoting complex subunit 2 (Kpc2), transcript variant C, mRNA. ACCESSION NM_001274169 VERSION NM_001274169.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2491) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2491) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2491) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2491) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2491) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2491) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2491) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2491) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2491) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2491) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2491) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2491) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2491) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2491) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2491) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2491) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2491) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2491) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2491) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2491) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 2491) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2491) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 2491) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 2491) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). On Jul 15, 2014 this sequence version replaced NM_001274169.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2491 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2491 /gene="Kpc2" /locus_tag="Dmel_CG11025" /gene_synonym="CG11025; dKPC2; Dmel\CG11025; isopeptidase-T-3; Isopeptidase-T-3; IsoT-3; ISOT-3; ISOT-3A" /note="Kip1 ubiquitination-promoting complex subunit 2" /map="56E1-56E1" /db_xref="FLYBASE:FBgn0028372" /db_xref="GeneID:37261" CDS 138..1823 /gene="Kpc2" /locus_tag="Dmel_CG11025" /gene_synonym="CG11025; dKPC2; Dmel\CG11025; isopeptidase-T-3; Isopeptidase-T-3; IsoT-3; ISOT-3; ISOT-3A" /note="CG11025 gene product from transcript CG11025-RC; CG11025-PC; Kpc2-PC; isopeptidase-T-3; isopeptidase T-3" /codon_start=1 /product="Kip1 ubiquitination-promoting complex subunit 2, isoform C" /protein_id="NP_001261098.1" /db_xref="FLYBASE:FBpp0303280" /db_xref="GeneID:37261" /db_xref="FLYBASE:FBgn0028372" /translation="MIPWMREKFNEKRAKWLARSKRSGGSPADESPRSSSHSHSQRTD ASDAESLSGSSLNVHTAESETQTDGGISASNSRPLVGGGSCVLRTPSPARRRRIHLEL QLQRREERAEHQKVVPQDSPTPTHQQQANALFLRKSAHTNRPGSSTSGEADDASRPGE SILVRVICPSSRVLIFKTDVNKRLNELKSEVILELSDDPDSIQLFAPDVRHLNPRYRL YRAEYFGGELNEGDTLAQLKVRNNETFILSPRRNTLPQTVSRIREVPGPNEQLVESAT RYVPVNCNQLPTIDINEIFQQSNIQYDVRKVLISLAQASAAVIGAGPYAPRLIAMLKQ RLINRRNQQADTLQCLVDMGFKRELAAFALKAHNGIYSTTMEWLIQNQNEENPQEPPG MNMQHSLSSISPSTIVTNNETIENTAALIEIVRIYSHRDSPPSDEIVESLTEMGFEET AVLAALKKTGNNKASACEWLCDNRSGSVIELREGLAPDSPILKVILEMPQVQMTLSNP KTFLAFLGILENEHAIRVWRGDNDTTSVITHILQKYHEEKHVLGINQFYTNRW" ORIGIN 1 tatcgacttt acaaaaataa aaatcgtttt tttttttttt gcaataacgc atcgattctg 61 tttacttgcg agaaatatgc aaaatagcca tcgaaaagtg ccgcaaaatg taacaaacac 121 ctagctgcag acccaagatg ataccctgga tgcgggagaa gttcaacgag aaacgggcca 181 agtggttggc gcgtagcaag cgcagcggtg gttctccggc tgacgaaagc cctcggagca 241 gcagtcatag ccacagccag cggacagacg ccagcgatgc ggagagcctg agcggatcct 301 cgttgaatgt ccacacggcg gaatctgaaa cgcagacgga tggcgggata tccgcttcca 361 attcgcggcc ccttgtgggc gggggcagtt gcgtcctaag gactccatcg cccgctcgcc 421 gacgtcgcat tcaccttgag ctacagctgc agcgacgaga ggaacgtgct gagcatcaga 481 aggtggtgcc acaggactcg cccacgccca ctcaccaaca gcaggctaat gctttgtttc 541 tcaggaaatc agcccataca aatcgcccag gtagctctac ttctggcgag gcagacgatg 601 ccagcaggcc aggtgaatct atcctggtgc gggtaatctg ccccagctct cgggttctta 661 tcttcaaaac ggacgttaat aagcgcctaa acgagctgaa gagtgaggtg attctggaac 721 tgagcgacga tcccgactcc atccagctat ttgccccaga tgtgcggcat cttaatccgc 781 gataccgtct ctatcgggcg gaatacttcg gcggcgagct taacgagggc gacacgctgg 841 cccagctaaa agttcgcaac aatgagactt tcatactctc cccacgacgc aatactctgc 901 cgcagactgt ttcacggata cgtgaggttc ctggcccaaa tgagcagctg gtggagagcg 961 ccacccgata cgtgcccgtc aattgcaacc agctgcccac catcgatatt aatgaaatct 1021 ttcagcagtc gaatatccaa tacgatgtgc gaaaggtgtt gatctctttg gctcaagctt 1081 ctgcggcggt tataggagct ggcccttatg ctccacgcct gatagctatg ctaaagcaac 1141 gtttgatcaa tcgccgaaat cagcaagcgg atacgctgca atgcctcgtg gacatgggct 1201 tcaagcggga gctagccgca tttgccttaa aagcacacaa tggcatttac tcgaccacga 1261 tggagtggct aatacagaac caaaacgagg aaaatccaca ggaaccgccg ggcatgaata 1321 tgcagcacag tctatcttcc atctcaccct ccacgattgt caccaataat gaaaccattg 1381 aaaacactgc tgccttgatt gagattgtac gaatctacag ccaccgggat tcccctccca 1441 gcgatgagat tgtggaatcg cttacagaaa tgggcttcga ggagacggca gtgctcgcgg 1501 cactgaagaa aactggcaac aacaaggcgt ccgcgtgcga atggttgtgc gacaatcgat 1561 cgggtagcgt tattgaactg cgtgaaggct tggcgcccga ttcgcccatc ctaaaggtga 1621 tcctggaaat gccacaagtc cagatgaccc taagcaatcc aaagactttt ttggcatttc 1681 tgggcatcct ggaaaacgaa catgcgatac gcgtgtggcg tggcgacaac gacacaacct 1741 cggtcatcac acatatcctt caaaagtacc atgaggagaa gcatgtgctt ggcatcaatc 1801 agttctatac gaaccgctgg tgaaagatgc cgctaagtgg ctttactatg agattaacca 1861 aattatattt atacatatac atacacaatc acacacccga agtgcatggc tgtagcttgg 1921 tccattttgg ggctctaatt atacattgtg tatgtgcccg tatgtaaaga gtatttttgt 1981 agccaaaaac catgaaagta aactgcacaa agccaaaaga tgcaatcgct tcgccaagag 2041 cacgcggctg cactctacaa acgcttaccg atcagtacga attgcatttt atacatacat 2101 atacatatat atacatacat acacatatat atacatacat acatatatat atatatatat 2161 atatatatat aaatataaaa tgtatctata tctagtcagg ccttcatcct acaattgtat 2221 taggttaaac aataattact ctattcatct agtttgctag ctcatcttca gccgaatctc 2281 gcactacatt tagaaaatgt cacatactgc atcccacaga aacaacccat cagtttataa 2341 gcgctcgtac gtgtggtgat ttaagtgcgt tgtaatccca ggttgtttaa accatcaact 2401 tgaactcaaa gtattatttt gtaaaccaaa tattcaaatt tgcatagttt taacaaaatg 2461 caaataaatc aattagtttt tgatacaaaa c //