Dbfetch
LOCUS NM_001273924 2669 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster mulet (mlt), transcript variant C, mRNA. ACCESSION NM_001273924 VERSION NM_001273924.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2669) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2669) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2669) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2669) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2669) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2669) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2669) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2669) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2669) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2669) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2669) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2669) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2669) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2669) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2669) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2669) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2669) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2669) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2669) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2669) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 2669) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2669) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 2669) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 2669) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2669 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2669 /gene="mlt" /locus_tag="Dmel_CG12214" /gene_synonym="CG12214; Dmel\CG12214; ms(2)3; ms(2)4210; ms(2)ry-3; ms(2)ry3; TBCE-like; Tbcel; TBCEL" /note="mulet" /map="46F3-46F3" /db_xref="FLYBASE:FBgn0265512" /db_xref="GeneID:36072" CDS 536..1915 /gene="mlt" /locus_tag="Dmel_CG12214" /gene_synonym="CG12214; Dmel\CG12214; ms(2)3; ms(2)4210; ms(2)ry-3; ms(2)ry3; TBCE-like; Tbcel; TBCEL" /note="CG12214 gene product from transcript CG12214-RC; CG12214-PC; mlt-PC; tubulin-specific chaperone E-like protein" /codon_start=1 /product="mulet, isoform C" /protein_id="NP_001260853.1" /db_xref="FLYBASE:FBpp0304278" /db_xref="GeneID:36072" /db_xref="FLYBASE:FBgn0265512" /translation="MPSLLEALERKYFAECEFENAHQPELHKRSDLPNDFTVTKCGGR MEFSIFIPRLSPLTSVPALLVLNDCDIDSAGDFDSIREKCQRVRELDLAQNKLSDWSE VFSILEHMPRIEFLNLSKNQLASPIGTLPTAPTINLKSLVLNGTYLDWACVDTLLKNL PVLQELHLSLNNYRQVLIDAEEAEQRLQETETPEETERRITKAHPALKTLHFTGNPVE HWQEICRLGRLFPNLEALVLADCPIKSLQAEESSETHRYFPSLRLLNLSSAQLDSWAA IDELAKFSELRNLRVKHWPLWESLECTEHERRQLLIARLPNVEMLNGGGKISSDERVD SERAFVRYYMDKPEEERPARYQELLQIHGKLDPLVNVSLKPDKRVKVLFTYNDVSESR FVDIYLTVNDLKVKLEKLVGLAPNKMRLYYLDQDYKEFGPEEMRYPNKQLYSYNIQSG DEIIIDAKK" ORIGIN 1 tggttagttg agcgtttggt ggcattgcga gcggacggag agtgattcgg aaaagcagaa 61 tagctgaaaa gcggaaaagc tggccactgc gacaaaggtt aagcagcagc gacaaacaca 121 aaacgacaac aaagggaaaa cgcatctaag ctggcgcaga gatcccaaaa aaaatacact 181 ccaaaaacca gcccagacca acgcactttg ggtttctttg ttacgatctt tttaacatcg 241 agtcgaagca cgttggagtc aaaaaagtct tcgaattagt gcgcaatatt taacggaata 301 acaagaaaca caacgaacgc gaaacgtgcg caataatttg tttaaaatca atgaagactg 361 caactgcgca aaactgaaaa attgcatcat agccaacaca gaacggggca gggaaaagtc 421 tatgagcgcg gaaaagtgga aaatcaatag ggggcagaat aagtaaagcc cgaataaata 481 tagggggatc caaaaccaat cccatctaag taatcatcaa aagtgcaagt tcgctatgcc 541 ttcccttttg gaggcgctgg agcgcaagta cttcgcagaa tgcgaattcg agaatgccca 601 ccaaccggaa ctccacaaac gaagcgacct gcccaatgac tttacggtca ccaagtgcgg 661 cggacgcatg gagttctcca tcttcatacc ccgcctatcc ccgctgacca gtgtgccagc 721 cttgctagtc ctcaacgact gtgacatcga ttcggccggg gacttcgaca gcatccggga 781 gaagtgccag cgggtgaggg aactggatct ggcccagaac aagctgagcg actggtcgga 841 ggtcttcagc atactggagc acatgccgcg cattgagttc ctcaacctga gcaagaacca 901 gctggccagt ccgatcggca cgttgcccac ggctcccacg atcaatctga agagcctggt 961 gctgaacggc acctacttgg actgggcctg cgtggatacc ctgctgaaga atttgcccgt 1021 gctccaggaa ctgcatctca gcctgaacaa ctacaggcag gtgctgatcg atgctgagga 1081 ggcggaacag cggctgcagg aaacggaaac gccagaggaa accgagcggc gaatcaccaa 1141 agcacatcct gctctaaaga ccctgcattt caccggtaat cccgtcgagc actggcagga 1201 aatctgccgg ctgggccggc tgtttcccaa cctcgaggcc ctcgttctgg cagactgtcc 1261 catcaaatcg ctgcaggccg aggagagcag cgagacacat agatacttcc ccagcctgag 1321 gcttttgaac ctaagttccg cgcaactgga tagctgggcg gccatcgatg agctggccaa 1381 gtttagcgag ctacgcaacc tccgtgtgaa acactggccc ctctgggaaa gtctggagtg 1441 cacggagcac gagagaaggc agctcctgat agccaggctg cccaacgtgg agatgctcaa 1501 cggaggcggc aagatcagta gcgatgagcg cgtcgactcg gagcgagctt ttgtcagata 1561 ctatatggac aagccggagg aggaacggcc tgcgcgctac caagagcttc tgcagatcca 1621 cggcaagctg gatcccttgg tcaatgtgag cctgaaacca gacaagcggg tcaaggtcct 1681 gttcacctac aacgatgtga gcgagagccg gttcgtggac atctatctga ccgtcaacga 1741 tttgaaggtg aagctggaga agctggtggg tctggcgccc aacaagatgc gcctctacta 1801 tctggatcag gactacaagg aattcgggcc ggaggagatg aggtacccca acaagcagtt 1861 gtacagctac aacatccagt cgggcgacga gatcatcatc gatgccaaga agtgaggcgc 1921 gacgtatggg ctacatgctt ccgtatctgg agaggattac cattaacccg aaccgccctt 1981 cgtcccccgc ctggtgctac aacttgtgat cttgtacacg aatcatttac atttacttta 2041 ctctactgtt agtgccgttc tgttctccgc agcgaacccc tgtgtacata cgttctgaaa 2101 atggccaagc gagcattact gcgcacccac atcgtatatt ttaattatta ctgcctaacc 2161 taagccacac acaaaataca aatacaaacc accacaaaaa aaaacaaaac aaaaacaaaa 2221 caaaaaatca aaaaaacaag caagaatgca ttaaacaatt ttaaaattta cccactctcc 2281 gcgttttatg gtgatgggca gcactttgcg ctggggatcg ctggaagata agatatgact 2341 catagagcga actcgaagca ccccaacaca ggcacacgtc cacggattgg ggatagtggg 2401 gagctttcgc gatcccgttg tcgatagctg acttcagcac tgcaattatc tcgctcgagg 2461 ggagctttga aaagttgccg gaaaagagac ctgagaactg gctctcccgc ttcccacata 2521 caattagctg aacaataagt atctatgatg gttacacgtc cacttaacac atttttgtta 2581 tggacactgg tgttcaaaat aatagtgatg aaatgtctag taaataattc gtcaacgatt 2641 taaataactc taaaatattt aatattttc //