Dbfetch
LOCUS NM_001273924 2669 bp mRNA linear INV 26-DEC-2023
DEFINITION Drosophila melanogaster mulet (mlt), transcript variant C, mRNA.
ACCESSION NM_001273924
VERSION NM_001273924.1
DBLINK BioProject: PRJNA164
BioSample: SAMN02803731
KEYWORDS RefSeq.
SOURCE Drosophila melanogaster (fruit fly)
ORGANISM Drosophila melanogaster
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE 1 (bases 1 to 2669)
AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St
Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K.,
Strelets,V., Russo,S.M. and Gelbart,W.M.
CONSRTM FlyBase Consortium
TITLE Gene Model Annotations for Drosophila melanogaster: Impact of
High-Throughput Data
JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015)
PUBMED 26109357
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 2669)
AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St
Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B.,
Russo,S.M. and Gelbart,W.M.
CONSRTM FlyBase Consortium
TITLE Gene Model Annotations for Drosophila melanogaster: The
Rule-Benders
JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015)
PUBMED 26109356
REMARK Publication Status: Online-Only
REFERENCE 3 (bases 1 to 2669)
AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I.,
Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R.,
Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G.,
Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N.,
Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A.,
Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E.
TITLE The Release 6 reference sequence of the Drosophila melanogaster
genome
JOURNAL Genome Res 25 (3), 445-458 (2015)
PUBMED 25589440
REFERENCE 4 (bases 1 to 2669)
AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M.,
Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F.,
Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E.
TITLE Sequence finishing and mapping of Drosophila melanogaster
heterochromatin
JOURNAL Science 316 (5831), 1625-1628 (2007)
PUBMED 17569867
REFERENCE 5 (bases 1 to 2669)
AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
TITLE The Release 5.1 annotation of Drosophila melanogaster
heterochromatin
JOURNAL Science 316 (5831), 1586-1591 (2007)
PUBMED 17569856
REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325]
REFERENCE 6 (bases 1 to 2669)
AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D.,
Ashburner,M. and Anxolabehere,D.
TITLE Combined evidence annotation of transposable elements in genome
sequences
JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005)
PUBMED 16110336
REFERENCE 7 (bases 1 to 2669)
AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A.,
Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A.,
Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W.,
Celniker,S.E., Rubin,G.M. and Karpen,G.H.
TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly
JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002)
PUBMED 12537574
REFERENCE 8 (bases 1 to 2669)
AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J.,
Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E.,
Rubin,G.M., Ashburner,M. and Celniker,S.E.
TITLE The transposable elements of the Drosophila melanogaster
euchromatin: a genomics perspective
JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002)
PUBMED 12537573
REFERENCE 9 (bases 1 to 2669)
AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S.,
Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E.,
Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L.,
Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D.,
Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J.,
Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M.,
Rubin,G.M. and Lewis,S.E.
TITLE Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review
JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002)
PUBMED 12537572
REFERENCE 10 (bases 1 to 2669)
AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W.,
Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E.,
Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M.,
Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S.,
Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M.,
Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W.,
Gibbs,R.A. and Rubin,G.M.
TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence
JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002)
PUBMED 12537568
REFERENCE 11 (bases 1 to 2669)
AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D.,
Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F.,
George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N.,
Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X.,
Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D.,
Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L.,
Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D.,
Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M.,
Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S.,
Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P.,
Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A.,
Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B.,
Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I.,
Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S.,
Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C.,
Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S.,
Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z.,
Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J.,
Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J.,
Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z.,
Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C.,
Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A.,
Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C.,
McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C.,
Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L.,
Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K.,
Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S.,
Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K.,
Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I.,
Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C.,
Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R.,
Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A.,
Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT,
Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F.,
Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H.,
Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O.,
Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C.
TITLE The genome sequence of Drosophila melanogaster
JOURNAL Science 287 (5461), 2185-2195 (2000)
PUBMED 10731132
REFERENCE 12 (bases 1 to 2669)
AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R.,
Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R.,
Smith,E., Yu,C. and Rubin,G.
CONSRTM Berkeley Drosophila Genome Project
TITLE Drosophila melanogaster release 4 sequence
JOURNAL Unpublished
REFERENCE 13 (bases 1 to 2669)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 14 (bases 1 to 2669)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 15 (bases 1 to 2669)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 16 (bases 1 to 2669)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 17 (bases 1 to 2669)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 18 (bases 1 to 2669)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 19 (bases 1 to 2669)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 20 (bases 1 to 2669)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 21 (bases 1 to 2669)
AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R.,
Park,S., Svirskas,R. and Karpen,G.
TITLE Direct Submission
JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne
Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
REMARK Direct Submission
REFERENCE 22 (bases 1 to 2669)
AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S.,
Svirskas,R. and Rubin,G.
TITLE Direct Submission
JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
Lawrence Berkeley National Laboratory, One Cyclotron Road, MS
64-121, Berkeley, CA 94720, USA
REMARK Direct Submission
REFERENCE 23 (bases 1 to 2669)
AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
CONSRTM Drosophila Heterochromatin Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project,
Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron
Road, Mailstop 64-121, Berkeley, CA 94720, USA
REFERENCE 24 (bases 1 to 2669)
AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J.
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive,
Rockville, MD 20850, USA
COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This
record is derived from an annotated genomic sequence (NT_033778).
##Genome-Annotation-Data-START##
Annotation Provider :: FlyBase
Annotation Status :: Full annotation
Annotation Version :: Release 6.54
URL :: http://flybase.org
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..2669
/organism="Drosophila melanogaster"
/mol_type="mRNA"
/db_xref="taxon:7227"
/chromosome="2R"
/genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2]
bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]"
gene 1..2669
/gene="mlt"
/locus_tag="Dmel_CG12214"
/gene_synonym="CG12214; Dmel\CG12214; ms(2)3; ms(2)4210;
ms(2)ry-3; ms(2)ry3; TBCE-like; Tbcel; TBCEL"
/note="mulet"
/map="46F3-46F3"
/db_xref="FLYBASE:FBgn0265512"
/db_xref="GeneID:36072"
CDS 536..1915
/gene="mlt"
/locus_tag="Dmel_CG12214"
/gene_synonym="CG12214; Dmel\CG12214; ms(2)3; ms(2)4210;
ms(2)ry-3; ms(2)ry3; TBCE-like; Tbcel; TBCEL"
/note="CG12214 gene product from transcript CG12214-RC;
CG12214-PC; mlt-PC; tubulin-specific chaperone E-like
protein"
/codon_start=1
/product="mulet, isoform C"
/protein_id="NP_001260853.1"
/db_xref="FLYBASE:FBpp0304278"
/db_xref="GeneID:36072"
/db_xref="FLYBASE:FBgn0265512"
/translation="MPSLLEALERKYFAECEFENAHQPELHKRSDLPNDFTVTKCGGR
MEFSIFIPRLSPLTSVPALLVLNDCDIDSAGDFDSIREKCQRVRELDLAQNKLSDWSE
VFSILEHMPRIEFLNLSKNQLASPIGTLPTAPTINLKSLVLNGTYLDWACVDTLLKNL
PVLQELHLSLNNYRQVLIDAEEAEQRLQETETPEETERRITKAHPALKTLHFTGNPVE
HWQEICRLGRLFPNLEALVLADCPIKSLQAEESSETHRYFPSLRLLNLSSAQLDSWAA
IDELAKFSELRNLRVKHWPLWESLECTEHERRQLLIARLPNVEMLNGGGKISSDERVD
SERAFVRYYMDKPEEERPARYQELLQIHGKLDPLVNVSLKPDKRVKVLFTYNDVSESR
FVDIYLTVNDLKVKLEKLVGLAPNKMRLYYLDQDYKEFGPEEMRYPNKQLYSYNIQSG
DEIIIDAKK"
ORIGIN
1 tggttagttg agcgtttggt ggcattgcga gcggacggag agtgattcgg aaaagcagaa
61 tagctgaaaa gcggaaaagc tggccactgc gacaaaggtt aagcagcagc gacaaacaca
121 aaacgacaac aaagggaaaa cgcatctaag ctggcgcaga gatcccaaaa aaaatacact
181 ccaaaaacca gcccagacca acgcactttg ggtttctttg ttacgatctt tttaacatcg
241 agtcgaagca cgttggagtc aaaaaagtct tcgaattagt gcgcaatatt taacggaata
301 acaagaaaca caacgaacgc gaaacgtgcg caataatttg tttaaaatca atgaagactg
361 caactgcgca aaactgaaaa attgcatcat agccaacaca gaacggggca gggaaaagtc
421 tatgagcgcg gaaaagtgga aaatcaatag ggggcagaat aagtaaagcc cgaataaata
481 tagggggatc caaaaccaat cccatctaag taatcatcaa aagtgcaagt tcgctatgcc
541 ttcccttttg gaggcgctgg agcgcaagta cttcgcagaa tgcgaattcg agaatgccca
601 ccaaccggaa ctccacaaac gaagcgacct gcccaatgac tttacggtca ccaagtgcgg
661 cggacgcatg gagttctcca tcttcatacc ccgcctatcc ccgctgacca gtgtgccagc
721 cttgctagtc ctcaacgact gtgacatcga ttcggccggg gacttcgaca gcatccggga
781 gaagtgccag cgggtgaggg aactggatct ggcccagaac aagctgagcg actggtcgga
841 ggtcttcagc atactggagc acatgccgcg cattgagttc ctcaacctga gcaagaacca
901 gctggccagt ccgatcggca cgttgcccac ggctcccacg atcaatctga agagcctggt
961 gctgaacggc acctacttgg actgggcctg cgtggatacc ctgctgaaga atttgcccgt
1021 gctccaggaa ctgcatctca gcctgaacaa ctacaggcag gtgctgatcg atgctgagga
1081 ggcggaacag cggctgcagg aaacggaaac gccagaggaa accgagcggc gaatcaccaa
1141 agcacatcct gctctaaaga ccctgcattt caccggtaat cccgtcgagc actggcagga
1201 aatctgccgg ctgggccggc tgtttcccaa cctcgaggcc ctcgttctgg cagactgtcc
1261 catcaaatcg ctgcaggccg aggagagcag cgagacacat agatacttcc ccagcctgag
1321 gcttttgaac ctaagttccg cgcaactgga tagctgggcg gccatcgatg agctggccaa
1381 gtttagcgag ctacgcaacc tccgtgtgaa acactggccc ctctgggaaa gtctggagtg
1441 cacggagcac gagagaaggc agctcctgat agccaggctg cccaacgtgg agatgctcaa
1501 cggaggcggc aagatcagta gcgatgagcg cgtcgactcg gagcgagctt ttgtcagata
1561 ctatatggac aagccggagg aggaacggcc tgcgcgctac caagagcttc tgcagatcca
1621 cggcaagctg gatcccttgg tcaatgtgag cctgaaacca gacaagcggg tcaaggtcct
1681 gttcacctac aacgatgtga gcgagagccg gttcgtggac atctatctga ccgtcaacga
1741 tttgaaggtg aagctggaga agctggtggg tctggcgccc aacaagatgc gcctctacta
1801 tctggatcag gactacaagg aattcgggcc ggaggagatg aggtacccca acaagcagtt
1861 gtacagctac aacatccagt cgggcgacga gatcatcatc gatgccaaga agtgaggcgc
1921 gacgtatggg ctacatgctt ccgtatctgg agaggattac cattaacccg aaccgccctt
1981 cgtcccccgc ctggtgctac aacttgtgat cttgtacacg aatcatttac atttacttta
2041 ctctactgtt agtgccgttc tgttctccgc agcgaacccc tgtgtacata cgttctgaaa
2101 atggccaagc gagcattact gcgcacccac atcgtatatt ttaattatta ctgcctaacc
2161 taagccacac acaaaataca aatacaaacc accacaaaaa aaaacaaaac aaaaacaaaa
2221 caaaaaatca aaaaaacaag caagaatgca ttaaacaatt ttaaaattta cccactctcc
2281 gcgttttatg gtgatgggca gcactttgcg ctggggatcg ctggaagata agatatgact
2341 catagagcga actcgaagca ccccaacaca ggcacacgtc cacggattgg ggatagtggg
2401 gagctttcgc gatcccgttg tcgatagctg acttcagcac tgcaattatc tcgctcgagg
2461 ggagctttga aaagttgccg gaaaagagac ctgagaactg gctctcccgc ttcccacata
2521 caattagctg aacaataagt atctatgatg gttacacgtc cacttaacac atttttgtta
2581 tggacactgg tgttcaaaat aatagtgatg aaatgtctag taaataattc gtcaacgatt
2641 taaataactc taaaatattt aatattttc
//